arXiv subjects

S. N. Taraskin

Publications and source records attributed to S. N. Taraskin.

At least 19 recordsLinked to original sources

arXiv2012

Prominent effect of soil network heterogeneity on microbial invasion

Using a network representation for real soil samples and mathematical models for microbial spread, we show that the structural heterogeneity of the soil habitat may have a very significant influence on the size of microbial invasions of the soil pore space. In particular, neglecting the soil structural heterogeneity may lead to a substantial underestimation of microbial invasion. Such effects are explained in terms of a crucial interplay between heterogeneity in microbial spread and heterogeneity in the topology of soil networks. The main influence of network topology on invasion is linked to the existence of long channels in soil networks that may act as bridges for transmission of microorganisms between distant parts of soil.

q-bio.PE↗

arXiv2012

Exact spin-spin correlation function for the zero-temperature random-field Ising model

An exact expression for the spin-spin correlation function is derived for the zero-temperature random-field Ising model defined on a Bethe lattice of arbitrary coordination number. The correlation length describing dynamic spin-spin correlations and separated from the intrinsic topological length scale of the Bethe lattice is shown to diverge as a power law at the critical point. The critical exponents governing the behaviour of the correlation length are consistent with the mean-field values found for a hypercubic lattice with dimension greater than the upper critical dimension.

cond-mat.stat-mech↗

arXiv2012

Epidemics in Networks of Spatially Correlated Three-dimensional Root Branching Structures

Using digitized images of the three-dimensional, branching structures for root systems of bean seedlings, together with analytical and numerical methods that map a common 'SIR' epidemiological model onto the bond percolation problem, we show how the spatially-correlated branching structures of plant roots affect transmission efficiencies, and hence the invasion criterion, for a soil-borne pathogen as it spreads through ensembles of morphologically complex hosts. We conclude that the inherent heterogeneities in transmissibilities arising from correlations in the degrees of overlap between neighbouring plants, render a population of root systems less susceptible to epidemic invasion than a corresponding homogeneous system. Several components of morphological complexity are analysed that contribute to disorder and heterogeneities in transmissibility of infection. Anisotropy in root shape is shown to increase resilience to epidemic invasion, while increasing the degree of branching enhances the spread of epidemics in the population of roots. Some extension of the methods for other epidemiological systems are discussed.

q-bio.PE↗

arXiv2009

Cooperative sequential adsorption with nearest-neighbor exclusion and next-nearest neighbor interaction

A model for cooperative sequential adsorption that incorporates nearest-neighbor exclusion and next-nearest neighbor interaction is presented. It is analyzed for the case of one-dimensional dimer and two-dimensional monomer adsorption. Analytic solutions found for certain values of the interaction strength are used to investigate jamming coverage and temporal approach to jamming in the one-dimensional case. In two dimensions, the series expansion of the coverage $θ(t)$ is presented and employed to provide estimates for the jamming coverage as a function of interaction strength. These estimates are supported by Monte Carlo simulation results.

cond-mat.stat-mech↗

arXiv2008

Stochastic spreading processes on a network model based on regular graphs

The dynamic behaviour of stochastic spreading processes on a network model based on k-regular graphs is investigated. The contact process and the susceptible-infected-susceptible model for the spread of epidemics are considered as prototype stochastic spreading processes. We study these on a network consisting of a mixture of 2- and 3-fold oordinated randomly-connected nodes of concentration p and 1-p, respectively, with p varying between 0 and 1. Varying the parameter p from p=0 (3-regular graph of infinite dimension) to p=1 (2-regular graph - 1D chain) allows us to investigate their behaviour under such structural changes. Both processes are expected to exhibit mean-field features for p=0 and features typical of the directed percolation universality class for p=1. The analysis is undertaken by means of Monte Carlo simulations and the application of mean-field theory. The quasi-stationary simulation method is used to obtain the phase diagram for the processes in this environment along with critical exponents. Predictions for critical exponents obtained from mean-field theory are found to agree with simulation results over a large range of values for p up to a value of p=0.95, where the system is found to sharply cross over to the one-dimensional case. Estimates of critical thresholds given by mean-field theory are found to underestimate the corresponding critical rates obtained numerically for all values of p.

cond-mat.dis-nn↗

arXiv2008

The contact process in disordered and periodic binary two-dimensional lattices

The critical behavior of the contact process in disordered and periodic binary 2d-lattices is investigated numerically by means of Monte Carlo simulations as well as via an analytical approximation and standard mean field theory. Phase-separation lines calculated numerically are found to agree well with analytical predictions around the homogeneous point. For the disordered case, values of static scaling exponents obtained via quasi-stationary simulations are found to change with disorder strength. In particular, the finite-size scaling exponent of the density of infected sites approaches a value consistent with the existence of an infinite-randomness fixed point as conjectured before for the 2d disordered CP. At the same time, both dynamical and static scaling exponents are found to coincide with the values established for the homogeneous case thus confirming that the contact process in a heterogeneous environment belongs to the directed percolation universality class.

cond-mat.stat-mech↗

arXiv2007

Atomic-charge distribution in glasses by terahertz spectroscopy

It is demonstrated that the width of the uncorrelated atomic-charge distribution in glasses can be extracted from the frequency dependence of the coupling coefficient for the far-infrared absorption measured experimentally by the time-domain terahertz spectroscopy technique. This value for As2S3 glass is found to be 0.12 (e). A density functional theory-based tight-binding molecular dynamics model of As2S3 glass qualitatively supports these findings.

cond-mat.dis-nn↗

arXiv2007

Supercritical series expansion for the contact process in heterogeneous and disordered environments

The supercritical series expansion of the survival probability for the one-dimensional contact process in heterogeneous and disordered lattices is used for the evaluation of the loci of critical points and critical exponents $β$. The heterogeneity and disorder are modeled by considering binary regular and irregular lattices of nodes characterized by different recovery rates and identical transmission rates. Two analytical approaches based on Nested Padé approximants and Partial Differential approximants were used in the case of expansions with respect to two variables (two recovery rates) for the evaluation of the critical values and critical exponents. The critical exponents in heterogeneous systems are very close to those for the homogeneous contact process thus confirming that the contact process in periodic heterogeneous environment belongs to the directed percolation universality class. The disordered systems, in contrast, seem to have continuously varying critical exponents.

cond-mat.stat-mech↗

arXiv2007

Temporal and dimensional effects in evolutionary graph theory

The spread in time of a mutation through a population is studied analytically and computationally in fully-connected networks and on spatial lattices. The time, t_*, for a favourable mutation to dominate scales with population size N as N^{(D+1)/D} in D-dimensional hypercubic lattices and as N ln N in fully-connected graphs. It is shown that the surface of the interface between mutants and non-mutants is crucial in predicting the dynamics of the system. Network topology has a significant effect on the equilibrium fitness of a simple population model incorporating multiple mutations and sexual reproduction. Includes supplementary information.

q-bio.PE↗

arXiv2007

Vibrational behaviour of a realistic amorphous-silicon model

The vibrational properties of a high-quality realistic model of amorphous silicon are examined. The longitudinal and transverse dynamical structure factors are calculated, and fitted to a damped harmonic oscillator (DHO) function. The width $Γ$ of the best-fit DHO to the longitudinal dynamical structure factor scales approximately as $k^{2}$ for wavevectors $k\lesssim0.55\textrmÅ^{-1}$, which is above the Ioffe-Regel crossover frequency separating the propagating and diffusing regimes, occurring at $k=0.38\pm0.03\textrmÅ^{-1}$. Using the DHO function as a fitting function for the transverse dynamical structure factor (without theoretical justification), gives a dependence of $Γ\propto k^α$ with $α\sim2.5$ for wavevectors $k\lesssim0.7\textrmÅ^{-1}$. There was no evidence for $Γ\propto k^{4}$ behaviour for either polarization.

cond-mat.mtrl-sci↗

arXiv2006

The contact process in heterogeneous and weakly-disordered systems

The critical behavior of the contact process (CP) in heterogeneous periodic and weakly-disordered environments is investigated using the supercritical series expansion and Monte Carlo (MC) simulations. Phase-separation lines and critical exponents $β$ (from series expansion) and $η$ (from MC simulations) are calculated. A general analytical expression for the locus of critical points is suggested for the weak-disorder limit and confirmed by the series expansion analysis and the MC simulations. Our results for the critical exponents show that the CP in heterogeneous environments remains in the directed percolation (DP) universality class, while for environments with quenched disorder, the data are compatible with the scenario of continuously changing critical exponents.

cond-mat.stat-mech↗

arXiv2006

Universal Features of Terahertz Absorption in Disordered Materials

Using an analytical theory, experimental terahertz time-domain spectroscopy data and numerical evidence, we demonstrate that the frequency dependence of the absorption coupling coefficient between far-infrared photons and atomic vibrations in disordered materials has the universal functional form, C(omega) = A + B*omega^2, where the material-specific constants A and B are related to the distributions of fluctuating charges obeying global and local charge neutrality, respectively.

cond-mat.dis-nn↗

arXiv2005

Spectral properties of disordered fully-connected graphs

The spectral properties of disordered fully-connected graphs with a special type of the node-node interactions are investigated. The approximate analytical expression for the ensemble-averaged spectral density for the Hamiltonian defined on the fully-connected graph is derived and analysed both for the electronic and vibrational problems which can be related to the contact process and to the problem of stochastic diffusion, respectively. It is demonstrated how to evaluate the extreme eigenvalues and use them for finding the lower bound estimates of the critical parameter for the contact process on the disordered fully-connected graphs.

cond-mat.dis-nn↗

arXiv2005

Extinction of Epidemics in Lattice Models with Quenched Disorder

The extinction of the contact process in lattice models with quenched disorder is analysed in the limit of small density of infected sites. It is shown that the problem in such a regime can be mapped to the quantum-mechanical one characterized by the Anderson Hamiltonian for an electron in a random lattice. It is demonstrated both analytically (self-consistent mean-field) and numerically (by direct diagonalization of the Hamiltonian and by means of cellular automata simulations) that disorder enhances the contact process given the mean values of random parameters are not influenced by disorder.

cond-mat.dis-nn↗

arXiv2005

Statistical properties of the critical eigenstates in power-law random banded matrices across the band

The level-spacing distribution in the tails of the eigenvalue bands of the power-law random banded matrix (PRBM) ensemble have been investigated numerically. The change of level-spacing statistics across the band is examined for different coupling strengths and compared to the density of states for the different systems. It is confirmed that, by varying the eigenvalue region, the same level-spacing statistics can be reached as by varying the coupling strength.

cond-mat.mes-hall↗

arXiv2005

Modelling the atomic structure of very high-density amorphous ice

The structure of very high-density amorphous (VHDA) ice has been modelled by positionally disordering three crystalline phases, namely ice IV, VI and XII. These phases were chosen because only they are stable or metastable in the region of the ice phase diagram where VHDA ice is formed, and their densities are comparable to that of VHDA ice. An excellent fit to the medium range of the experimentally observed pair-correlation function g(r) of VHDA ice was obtained by introducing disorder into the positions of the H2O molecules, as well as small amounts of molecular rotational disorder, disorder in the O--H bond lengths and disorder in the H--O--H bond angles. The low-k behaviour of the experimental structure factor, S(k), is also very well reproduced by this disordered-crystal model. The fraction of each phase present in the best-fit disordered model is very close to that observed in the probable crystallization products of VHDA ice. In particular, only negligible amounts of ice IV are predicted, in accordance with experimental observation.

cond-mat.mtrl-sci↗

arXiv2004

Atomic vibrations in disordered systems: Comparison of disordered diamond lattices and a realistic amorphous silicon model

Force-constant and positional disorder have been introduced into diamond lattice models in an attempt to mimic the vibrational properties of a realistic amorphous silicon model. Neither type of disorder is sufficient on its own to mimic the realistic model. By comparing the spectral densities of these models, it is shown that a combination of both disorders is a better representation, but still not completely satisfactory. Topological disorder in these models was investigated by renumbering the atoms and examining the dynamical matrix graphically. The dynamical matrix of the realistic model is similar to that of a positionally-disordered lattice model, implying that the short-range order in both systems is similar.

cond-mat.dis-nn↗

arXiv2004

Structural characteristics of positionally-disordered lattices: relation to the first sharp diffraction peak in glasses

Positional disorder has been introduced into the atomic structure of certain crystalline lattices, and the orientationally-averaged structure factor S(k) and pair-correlation function g(r) of these disordered lattices have been studied. Analytical expressions for S(k) and g(r) for Gaussian positional disorder in 2D and 3D are confirmed with precise numerical simulations. These analytic results also have a bearing on the unsolved Gauss circle problem in mathematics. As the positional disorder increases, high-k peaks in S(k) are destroyed first, eventually leaving a single peak, that with the lowest-k value. The pair-correlation function for lattices with such high levels of positional disorder exhibits damped oscillations, with a period equal to the separation between the furthest-separated (lowest-k) lattice planes. The last surviving peak in S(k) is, for example for silicon and silica, at a wavevector nearly identical to that of the experimentally-observed first sharp diffraction peak (FSDP) in the amorphous phases of those materials. Thus, for these amorphous materials at least, the FSDP can be regarded as arising from scattering from atomic configurations equivalent to the single family of positionally-disordered local Bragg planes having the furthest separation.

cond-mat.mtrl-sci↗