arXiv subjects

S. Rafaï

Publications and source records attributed to S. Rafaï.

4 recordsLinked to original sources

arXiv2021

A Reduced Model for a Phoretic Swimmer

We consider a 2D model of an autophoretic particle in which the particle has a circular shape and emits/absorbs a solute that diffuses and is advected by the suspending fluid. Beyond a certain emission/absorption rate (characterized by a dimensionless Péclet number, $Pe$) the particle is known to undergo a bifurcation from a non motile to a motile state, with different trajectories, going from a straight to circular and to a chaotic motion by progressively increasing $Pe$. From the full model involving solute diffusion and advection, we derive a reduced closed model which involves only two time-dependent amplitudes $C_1(t)$ and $C_2(t)$ corresponding to the first two Fourier modes of the solute concentration field. This model consists of two coupled nonlinear ordinary differential equations for $C_1$ and $C_2$ and presents several great advantages:(i) the straight and circular motions can be handled fully analytically, (ii) complex motions such as chaos can be analyzed numerically very efficiently in comparison to the numerically expensive full model involving partial differential equations, (iii) the reduced model has a universal form dictated only by symmetries, (iv) the model can be extended to higher Fourier modes. The derivation method is exemplified for a 2D model, for simplicity, but can easily be extended to 3D, not only for the presently selected phoretic model, but also for any model in which chemical activity triggers locomotion. A typical example can be found, for example, in the field of cell motility involving acto-myosin kinetics. This strategy offers an interesting way to cope with swimmers on the basis of ordinary differential equations, allowing for analytical tractability and efficient numerical treatment.

cond-mat.soft↗

arXiv2016

Amoeboid swimming in a channel

Several micro-organisms, such as bacteria, algae, or spermatozoa, use flagella or cilia to swim in a fluid, while many other micro-organisms instead use ample shape deformation, described as amoeboid, to propel themselves by either crawling on a substrate or swimming. Many eukaryotic cells were believed to require an underlying substratum to migrate (crawl) by using membrane deformation (like blebbing or generation of lamellipodia) but there is now increasing evidence that a large variety of cells (including those of the immune system) can migrate without the assistance of focal adhesion, allowing them to swim as efficiently as they can crawl. This paper details the analysis of amoeboid swimming in a confined fluid by modeling the swimmer as an inextensible membrane deploying local active forces. The swimmer displays a rich behavior: it may settle into a straight trajectory in the channel or navigate from one wall to the other depending on its confinement. The nature of the swimmer is also found to be affected by confinement: the swimmer can behave, on the average over one swimming cycle, as a pusher at low confinement, and becomes a puller at higher confinement. The swimmer's nature is thus not an intrinsic property. The scaling of the swimmer velocity V with the force amplitude A is analyzed in detail showing that at small enough A, $V\sim A^2/η^2$, whereas at large enough A, V is independent of the force and is determined solely by the stroke frequency and swimmer size. This finding starkly contrasts with currently known results found from swimming models where motion is based on flagellar or ciliary activity, where $V\sim A/η$. To conclude, two definitions of efficiency as put forward in the literature are analyzed with distinct outcomes. We find that one type of efficiency has an optimum as a function of confinement while the other does not. Future perspectives are outlined.

physics.bio-ph↗

arXiv2015

Amoeboid motion in confined geometry

Many eukaryotic cells undergo frequent shape changes (described as amoeboid motion) that enable them to move forward. We investigate the effect of confinement on a minimal model of amoeboid swimmer. Complex pictures emerge: (i) The swimmer's nature (i.e., either pusher or puller) can be modified by confinement, thus suggesting that this is not an intrinsic property of the swimmer. This swimming nature transition stems from intricate internal degrees of freedom of membrane deformation. (ii) The swimming speed might increase with increasing confinement before decreasing again for stronger confinements. (iii) A straight amoeoboid swimmer's trajectory in the channel can become unstable, and ample lateral excursions of the swimmer prevail. This happens for both pusher- and puller-type swimmers. For weak confinement, these excursions are symmetric, while they become asymmetric at stronger confinement, whereby the swimmer is located closer to one of the two walls. In this study, we combine numerical and theoretical analyses.

physics.bio-ph↗

arXiv2009

Is there a Relationship between the Elongational Viscosity and the First Normal Stress Difference in Polymer Solutions?

We investigate a variety of different polymer solutions in shear and elongational flow. The shear flow is created in the cone-plate-geometry of a commercial rheometer. We use capillary thinning of a filament that is formed by a polymer solution in the Capillary Breakup Extensional Rheometer (CaBER) as an elongational flow. We compare the relaxation time and the elongational viscosity measured in the CaBER with the first normal stress difference and the relaxation time that we measured in our rheometer. All of these four quantities depend on different fluid parameters - the viscosity of the polymer solution, the polymer concentration within the solution, and the molecular weight of the polymers - and on the shear rate (in the shear flow measurements). Nevertheless, we find that the first normal stress coefficient depends quadratically on the CaBER relaxation time. A simple model is presented that explains this relation.

cond-mat.soft↗