arXiv subjects

S. Stramaglia

Publications and source records attributed to S. Stramaglia.

At least 19 recordsLinked to original sources

arXiv2025

Cooperative effects in feature importance of individual patterns: application to air pollutants and Alzheimer disease

Leveraging recent advances in the analysis of synergy and redundancy in systems of random variables, an adaptive version of the widely used metric Leave One Covariate Out (LOCO) has been recently proposed to quantify cooperative effects in feature importance (Hi-Fi), a key technique in explainable artificial intelligence (XAI), so as to disentangle high-order effects involving a particular input feature in regression problems. Differently from standard feature importance tools, where a single score measures the relevance of each feature, each feature is here characterized by three scores, a two-body (unique) score and higher-order scores (redundant and synergistic). This paper presents a framework to assign those three scores (unique, redundant, and synergistic) to each individual pattern of the data set, while comparing it with the well-known measure of feature importance named {\it Shapley effect}. To illustrate the potential of the proposed framework, we focus on a One-Health application: the relation between air pollutants and Alzheimer's disease mortality rate. Our main result is the synergistic association between features related to $O_3$ and $NO_2$ with mortality, especially in the provinces of Bergamo e Brescia; notably also the density of urban green areas displays synergistic influence with pollutants for the prediction of AD mortality. Our results place local Hi-Fi as a promising tool of wide applicability, which opens new perspectives for XAI as well as to analyze high-order relationships in complex systems.

cs.LG↗

arXiv2016

Lagged and instantaneous dynamical influences related to brain structural connectivity

Contemporary neuroimaging methods can shed light on the basis of human neural and cognitive specializations, with important implications for neuroscience and medicine. Different MRI acquisitions provide different brain networks at the macroscale; whilst diffusion-weighted MRI (dMRI) provides a structural connectivity (SC) coincident with the bundles of parallel fibers between brain areas, functional MRI (fMRI) accounts for the variations in the blood-oxygenation-level-dependent T2* signal, providing functional connectivity (FC).Understanding the precise relation between FC and SC, that is, between brain dynamics and structure, is still a challenge for neuroscience. To investigate this problem, we acquired data at rest and built the corresponding SC (with matrix elements corresponding to the fiber number between brain areas) to be compared with FC connectivity matrices obtained by 3 different methods: directed dependencies by an exploratory version of structural equation modeling (eSEM), linear correlations (C) and partial correlations (PC). We also considered the possibility of using lagged correlations in time series; so, we compared a lagged version of eSEM and Granger causality (GC). Our results were two-fold: firstly, eSEM performance in correlating with SC was comparable to those obtained from C and PC, but eSEM (not C nor PC) provides information about directionality of the functional interactions. Second, interactions on a time scale much smaller than the sampling time, captured by instantaneous connectivity methods, are much more related to SC than slow directed influences captured by the lagged analysis. Indeed the performance in correlating with SC was much worse for GC and for the lagged version of eSEM. We expect these results to supply further insights to the interplay between SC and functional patterns, an important issue in the study of brain physiology and function.

q-bio.NC↗

arXiv2012

Expanding the Transfer Entropy to Identify Information Subgraphs in Complex Systems

We propose a formal expansion of the transfer entropy to put in evidence irreducible sets of variables which provide information for the future state of each assigned target. Multiplets characterized by a large contribution to the expansion are associated to informational circuits present in the system, with an informational character which can be associated to the sign of the contribution. For the sake of computational complexity, we adopt the assumption of Gaussianity and use the corresponding exact formula for the conditional mutual information. We report the application of the proposed methodology on two EEG data sets.

q-bio.QM↗

arXiv2012

A blind deconvolution approach to recover effective connectivity brain networks from resting state fMRI data

A great improvement to the insight on brain function that we can get from fMRI data can come from effective connectivity analysis, in which the flow of information between even remote brain regions is inferred by the parameters of a predictive dynamical model. As opposed to biologically inspired models, some techniques as Granger causality (GC) are purely data-driven and rely on statistical prediction and temporal precedence. While powerful and widely applicable, this approach could suffer from two main limitations when applied to BOLD fMRI data: confounding effect of hemodynamic response function (HRF) and conditioning to a large number of variables in presence of short time series. For task-related fMRI, neural population dynamics can be captured by modeling signal dynamics with explicit exogenous inputs; for resting-state fMRI on the other hand, the absence of explicit inputs makes this task more difficult, unless relying on some specific prior physiological hypothesis. In order to overcome these issues and to allow a more general approach, here we present a simple and novel blind-deconvolution technique for BOLD-fMRI signal. Coming to the second limitation, a fully multivariate conditioning with short and noisy data leads to computational problems due to overfitting. Furthermore, conceptual issues arise in presence of redundancy. We thus apply partial conditioning to a limited subset of variables in the framework of information theory, as recently proposed. Mixing these two improvements we compare the differences between BOLD and deconvolved BOLD level effective networks and draw some conclusions.

q-bio.NC↗

arXiv2010

Redundant variables and Granger causality

We discuss the use of multivariate Granger causality in presence of redundant variables: the application of the standard analysis, in this case, leads to under-estimation of causalities. Using the un-normalized version of the causality index, we quantitatively develop the notions of redundancy and synergy in the frame of causality and propose two approaches to group redundant variables: (i) for a given target, the remaining variables are grouped so as to maximize the total causality and (ii) the whole set of variables is partitioned to maximize the sum of the causalities between subsets. We show the application to a real neurological experiment, aiming to a deeper understanding of the physiological basis of abnormal neuronal oscillations in the migraine brain. The outcome by our approach reveals the change in the informational pattern due to repetitive transcranial magnetic stimulations.

q-bio.QM↗

arXiv2008

Phase diagram of a generalized Winfree model

We study the phase diagram of a generalized Winfree model. The modification is such that the coupling depends on the fraction of synchronized oscillators, a situation which has been noted in some experiments on coupled Josephson junctions and mechanical systems. We let the global coupling k be a function of the Kuramoto order parameter r through an exponent z such that z=1 corresponds to the standard Winfree model, z<1 strengthens the coupling at low r (low amount of synchronization) and, at z>1, the coupling is weakened for low r. Using both analytical and numerical approaches, we find that z controls the size of the incoherent phase region, and one may make the incoherent behavior less typical by choosing z<1. We also find that the original Winfree model is a rather special case, indeed the partial locked behavior disappears for z>1. At fixed k and varying gamma, the stability boundary of the locked phase corresponds to a transition that is continuous for z<1 and first-order for z>1. This change in the nature of the transition is in accordance with a previous study on a similarly modified Kuramoto model.

cond-mat.dis-nn↗

arXiv2008

AdS-QCD quark-antiquark potential, meson spectrum and tetraquarks

AdS/QCD correspondence predicts the structure of quark-antiquark potential in the static limit. We use this piece of information together with the Salpeter equation (Schrödinger equation with relativistic kinematics) and a short range hyperfine splitting potential to determine quark masses and the quark potential parameters from the meson spectrum. The agreement between theory and experimental data is satisfactory provided one considers only mesons comprising at least one heavy quark. We use the same potential (in the one-gluon-exchange approximation) and these data to estimate constituent diquark masses. Using these results as an input we compute tetraquark masses using a diquark-antidiquark model. The masses of the states X(3872) or Y(3940) are predicted rather accurately. We also compute tetraquark masses with open charm and strangeness. Our result is that tetraquark candidates such as D_s(2317), D_s(2457) or X(2632) can hardly be interpreted as diquark-antidiquark states within the present approach.

hep-ph↗

arXiv2007

Natural clustering: the modularity approach

We show that modularity, a quantity introduced in the study of networked systems, can be generalized and used in the clustering problem as an indicator for the quality of the solution. The introduction of this measure arises very naturally in the case of clustering algorithms that are rooted in Statistical Mechanics and use the analogy with a physical system.

cond-mat.stat-mech↗

arXiv2005

Multiscale analysis of heart rate, blood pressure and respiration time series

We present the multiscale entropy analysis of short term physiological time series of simultaneously acquired samples of heart rate, blood pressure and lung volume, from healthy subjects and from subjects with Chronic Heart Failure. Evaluating the complexity of signals at the multiple time scales inherent in physiologic dynamics, we find that healthy subjects show more complex time series at large time scales; on the other hand, at fast time scales, which are more influenced by respiration, the pathologic dynamics of blood pressure is the most random. These results robustly separate healthy and pathologic groups. We also propose a multiscale approach to evaluate interactions between time series, by performing a multivariate autoregressive modelling of the coarse grained time series: this analysis provides several new quantitative indicators which are statistically correlated with the pathology.

physics.med-ph↗

arXiv2005

Response of Autonomic Nervous System to Body Positions: Fourier and Wavelet Analysis

Two mathematical methods, the Fourier and wavelet transforms, were used to study the short term cardiovascular control system. Time series, picked from electrocardiogram and arterial blood pressure lasting 6 minutes, were analyzed in supine position (SUP), during the first (HD1), and the second parts (HD2) of $90^{\circ}$ head down tilt and during recovery (REC). The wavelet transform was performed using the Haar function of period $T=2^j$ ($% j=1$,2,$... $,6) to obtain wavelet coefficients. Power spectra components were analyzed within three bands, VLF (0.003-0.04), LF (0.04-0.15) and HF (0.15-0.4) with the frequency unit cycle/interval. Wavelet transform demonstrated a higher discrimination among all analyzed periods than the Fourier transform. For the Fourier analysis, the LF of R-R intervals and VLF of systolic blood pressure show more evident difference for different body positions. For the wavelet analysis, the systolic blood pressures show much more evident difference than the R-R intervals. This study suggests a difference in the response of the vessels and the heart to different body positions. The partial dissociation between VLF and LF results is a physiologically relevant finding of this work.

physics.bio-ph↗

arXiv2004

Leave-one-out prediction error of systolic arterial pressure time series under paced breathing

In this paper we show that different physiological states and pathological conditions may be characterized in terms of predictability of time series signals from the underlying biological system. In particular we consider systolic arterial pressure time series from healthy subjects and Chronic Heart Failure patients, undergoing paced respiration. We model time series by the regularized least squares approach and quantify predictability by the leave-one-out error. We find that the entrainment mechanism connected to paced breath, that renders the arterial blood pressure signal more regular, thus more predictable, is less effective in patients, and this effect correlates with the seriousness of the heart failure. The leave-one-out error separates controls from patients and, when all orders of nonlinearity are taken into account, alive patients from patients for which cardiac death occurred.

physics.med-ph↗

arXiv2004

Deterministic Annealing as a jet clustering algorithm in hadronic collisions

We show that a general purpose clusterization algorithm, Deterministic Annealing, can be adapted to the problem of jet identification in particle production by high energy collisions. In particular we consider the problem of jet searching in events generated at hadronic colliders. Deterministic Annealing is able to reproduce the results obtained by traditional jet algorithms and to exhibit a higher degree of flexibility.

hep-ph↗

arXiv2004

Steady-state visual evoked potentials and phase synchronization in migraine

We investigate phase synchronization in EEG recordings from migraine patients. We use the analytic signal technique, based on the Hilbert transform, and find that migraine brains are characterized by enhanced alpha band phase synchronization in presence of visual stimuli. Our findings show that migraine patients have an overactive regulatory mechanism that renders them more sensitive to external stimuli.

physics.med-ph↗

arXiv2004

Phase shifts of synchronized oscillators and the systolic/diastolic blood pressure relation

We study the phase-synchronization properties of systolic and diastolic arterial pressure in healthy subjects. We find that delays in the oscillatory components of the time series depend on the frequency bands that are considered, in particular we find a change of sign in the phase shift going from the Very Low Frequency band to the High Frequency band. This behavior should reflect a collective behavior of a system of nonlinear interacting elementary oscillators. We prove that some models describing such systems, e.g. the Winfree and the Kuramoto models offer a clue to this phenomenon. For these theoretical models there is a linear relationship between phase shifts and the difference of natural frequencies of oscillators and a change of sign in the phase shift naturally emerges.

physics.med-ph↗

arXiv2003

Quasi-particle Specific Heats for the Crystalline Color Superconducting Phase of QCD

We calculate the specific heats of quasi-particles of two-flavor QCD in its crystalline phases for low temperature. We show that for the different crystalline structures considered here there are gapless modes contributing linearly in temperature to the specific heat. We evaluate also the phonon contributions which are cubic in temperature. These features might be relevant for compact stars with an inner shell in a color superconducting crystalline phase.

hep-ph↗

arXiv2002

Jet analysis by Deterministic Annealing

We perform a comparison of two jet clusterization algorithms. The first one is the standard Durham algorithm and the second one is a global optimization scheme, Deterministic Annealing, often used in clusterization problems, and adapted to the problem of jet identification in particle production by high energy collisions; in particular we study hadronic jets in WW production by high energy electron positron scattering. Our results are as follows. First, we find that the two procedures give basically the same output as far as the particle clusterization is concerned. Second, we find that the increase of CPU time with the particle multiplicity is much faster for the Durham jet clustering algorithm in comparison with Deterministic Annealing. Since this result follows from the higher computational complexity of the Durham scheme, it should not depend on the particular process studied here and might be significant for jet physics at LHC as well.

hep-ph↗

arXiv2001

Cost functions for pairwise data clustering

Cost functions for non-hierarchical pairwise clustering are introduced, in the probabilistic autoencoder framework, by the request of maximal average similarity between the input and the output of the autoencoder. The partition provided by these cost functions identifies clusters with dense connected regions in data space; differences and similarities with respect to a well known cost function for pairwise clustering are outlined.

cond-mat.dis-nn↗

arXiv2000

Controlling chaos in diluted networks with continuous neurons

Diluted neural networks with continuous neurons and nonmonotonic transfer function are studied, with both fixed and dynamic synapses. A noisy stimulus with periodic variance results in a mechanism for controlling chaos in neural systems with fixed synapses: a proper amount of external perturbation forces the system to behave periodically with the same period as the stimulus.

cond-mat.dis-nn↗