arXiv subjects

S. Tabik

Publications and source records attributed to S. Tabik.

3 recordsLinked to original sources

arXiv2020

COVIDGR dataset and COVID-SDNet methodology for predicting COVID-19 based on Chest X-Ray images

Currently, Coronavirus disease (COVID-19), one of the most infectious diseases in the 21st century, is diagnosed using RT-PCR testing, CT scans and/or Chest X-Ray (CXR) images. CT (Computed Tomography) scanners and RT-PCR testing are not available in most medical centers and hence in many cases CXR images become the most time/cost effective tool for assisting clinicians in making decisions. Deep learning neural networks have a great potential for building COVID-19 triage systems and detecting COVID-19 patients, especially patients with low severity. Unfortunately, current databases do not allow building such systems as they are highly heterogeneous and biased towards severe cases. This paper is three-fold: (i) we demystify the high sensitivities achieved by most recent COVID-19 classification models, (ii) under a close collaboration with Hospital Universitario Cl\'inico San Cecilio, Granada, Spain, we built COVIDGR-1.0, a homogeneous and balanced database that includes all levels of severity, from normal with Positive RT-PCR, Mild, Moderate to Severe. COVIDGR-1.0 contains 426 positive and 426 negative PA (PosteroAnterior) CXR views and (iii) we propose COVID Smart Data based Network (COVID-SDNet) methodology for improving the generalization capacity of COVID-classification models. Our approach reaches good and stable results with an accuracy of $97.72\% \pm 0.95 \%$, $86.90\% \pm 3.20\%$, $61.80\% \pm 5.49\%$ in severe, moderate and mild COVID-19 severity levels (Paper accepted for publication in Journal of Biomedical and Health Informatics). Our approach could help in the early detection of COVID-19. COVIDGR-1.0 along with the severity level labels are available to the scientific community through this link https://dasci.es/es/transferencia/open-data/covidgr/.

eess.IV↗

arXiv2020

A data relocation approach for terrain surface analysis on multi-GPU systems: a case study on the total viewshed problem

Digital Elevation Models (DEMs) are important datasets for modelling the line of sight, such as radio signals, sound waves and human vision. These are commonly analyzed using rotational sweep algorithms. However, such algorithms require large numbers of memory accesses to 2D arrays which, despite being regular, result in poor data locality in memory. Here, we propose a new methodology called skewed Digital Elevation Model (sDEM), which substantially improves the locality of memory accesses and increases the inherent parallelism involved in the computation of rotational sweep-based algorithms. In particular, sDEM applies a data restructuring technique before accessing the memory and performing the computation. To demonstrate the high efficiency of sDEM, we use the problem of total viewshed computation as a case study considering different implementations for single-core, multi-core, single-GPU and multi-GPU platforms. We conducted two experiments to compare sDEM with (i) the most commonly used geographic information systems (GIS) software and (ii) the state-of-the-art algorithm. In the first experiment, sDEM is on average 8.8x faster than current GIS software despite being able to consider only few points because of their limitations. In the second experiment, sDEM is 827.3x faster than the state-of-the-art algorithm in the best case.

cs.DS↗

arXiv2020

MNIST-NET10: A heterogeneous deep networks fusion based on the degree of certainty to reach 0.1 error rate. Ensembles overview and proposal

Ensemble methods have been widely used for improving the results of the best single classificationmodel. A large body of works have achieved better performance mainly by applying one specific ensemble method. However, very few works have explored complex fusion schemes using het-erogeneous ensembles with new aggregation strategies. This paper is three-fold: 1) It provides an overview of the most popular ensemble methods, 2) analyzes several fusion schemes using MNIST as guiding thread and 3) introduces MNIST-NET10, a complex heterogeneous fusion architecture based on a degree of certainty aggregation approach; it combines two heterogeneous schemes from the perspective of data, model and fusion strategy. MNIST-NET10 reaches a new record in MNISTwith only 10 misclassified images. Our analysis shows that such complex heterogeneous fusionarchitectures based on the degree of certainty can be considered as a way of taking benefit fromdiversity.

cs.LG↗