arXiv subjects

Sachin Dudda Nagaraju

Publications and source records attributed to Sachin Dudda Nagaraju.

4 recordsLinked to original sources

arXiv2026

Federated Learning for Cross-Modality Medical Image Segmentation via Augmentation-Driven Generalization

Purpose: Developing generalizable medical image segmentation models is challenging because imaging data are distributed across institutions and differ in modality and acquisition protocol. Federated learning (FL) enables collaborative training without centralizing raw medical images, but cross-modality domain shifts between computed tomography (CT) and magnetic resonance imaging (MRI) can substantially reduce model performance. This study investigates augmentation-driven cross-modality FL for abdominal organ and whole-heart segmentation. Methods: We evaluate convolution-based spatial augmentation, frequency-domain argumentation, domain-specific normalization, and global intensity nonlinear (GIN) augmentation for multimodal segmentation. Abdominal organ segmentation and whole-heart segmentation are first evaluated using a 2D U-Net framework. For whole-heart segmentation, we additionally perform native 3D experiments using a self-configuring nnU-Net architecture on the CARE-WHS 2026 dataset, enabling evaluation of whether the observed cross-modality FL behavior persists when moving from slice-based 2D segmentation to volumetric 3D segmentation. Results: GIN provides the most consistent cross-modality performance among the evaluated approaches in the original 2D experiments. For pancreas segmentation, the Dice similarity coefficient (DSC) improved from 0.073 to 0.437 when CT data were incorporated through federated cross-modality training. In 3D whole-heart segmentation, FedGIN improved mean DSC over FedAvg from 0.8696 to 0.8901 on the unseen CT center and from 0.7160 to 0.7956 on the unseen MRI center. Relative to centralized GIN training, FedGIN retained 92.4\% of performance on unseen CT data and achieved comparable performance on unseen MRI data (0.7956 versus 0.7937).

cs.CV↗

arXiv2026

Federated Multi-Task Learning for Bladder Tumor Segmentation and MIBC Classification Using a Hybrid CNN-Transformer Architecture

Accurate bladder tumor segmentation and assessment of mus- cle invasion from T2-weighted MRI are important for treatment plan- ning, but developing robust models across institutions is challenging be- cause patient data cannot be centrally pooled and imaging characteristics vary across scanners and acquisition protocols. We propose a federated multi-task learning framework for joint bladder tumor segmentation and MIBC/NMIBC classification across four clinical centers. The proposed Swin Hybrid model combines a ResNet-34 branch for local texture and boundary information with a Swin-Tiny Transformer for global anatomi- cal context. A segmentation-guided classification mechanism further uses tumor localization information to support MIBC prediction. We also investigate several augmentation strategies under both centralized and federated training to improve robustness to multi-center variability. Ex- periments on the FedBCa dataset show that the Swin Hybrid provides the best overall balance between segmentation and classification among the evaluated architectures. Under federated training, Geo+Elastic aug- mentation achieved a DSC of 0.8100 and a patient-level AUC of 0.8931, yielding the highest combined score of 0.8474. These results demonstrate that joint segmentation and classification can be effectively performed across multiple institutions using federated training without centralizing patient data.

cs.CV↗

arXiv2026

A Few Cases Are All You Need: An Empirical Study of Annotation-Efficient LoRA Fine-Tuning of MedSAM3

Medical image segmentation is essential for clinical workflows such as treatment planning and disease assessment. While specialist tools like TotalSegmentator and MRSegmentator achieve strong performance, they require large annotated datasets for training. Medical foundation models offer a promising alternative through large-scale pretraining that reduces the annotation burden for new tasks, but zero-shot performance remains limited. Parameter-efficient adaptation via Low-Rank Adaptation (LoRA) enables efficient specialization with few trainable parameters, but a key question remains: how many expert-annotated cases are needed to achieve clinically useful segmentation performance? We address this by adapting MedSAM3 with LoRA for five abdominal organs (liver, kidneys, spleen, gallbladder, and pancreas) in CT and MRI using only 1, 2, 5, and 10 annotated cases, evaluating on AMOS22 dataset. With just 10 cases, models achieve performance competitive with specialist systems trained on orders of magnitude more data. Notably, this includes reliable gallbladder segmentation (Dice 0.68 CT, 0.59 MRI) where existing tools fail almost completely (Dice 0.0004), while remaining within 5--10% of MRSegmentator for liver, kidneys, and spleen using over 100 times fewer annotations. Furthermore, external validation on the Whole Heart Segmentation dataset shows that the approach extends to cardiac segmentation, a use case beyond the scope of TotalSegmentator (MRI) and MRSegmentator, achieving competitive left ventricle (LV) performance with only 10 annotated cases. Training requires only3--5,hours per organ on a single GPU, approximately 2--3 times faster than nnU-Net. These findings suggest that ten annotated cases are sufficient for clinically useful segmentation, effectively reducing bottlenecks for both image annotation and training time.

cs.CV↗

arXiv2025

FedGIN: Federated Learning with Dynamic Global Intensity Non-linear Augmentation for Organ Segmentation using Multi-modal Images

Medical image segmentation plays a crucial role in AI-assisted diagnostics, surgical planning, and treatment monitoring. Accurate and robust segmentation models are essential for enabling reliable, data-driven clinical decision making across diverse imaging modalities. Given the inherent variability in image characteristics across modalities, developing a unified model capable of generalizing effectively to multiple modalities would be highly beneficial. This model could streamline clinical workflows and reduce the need for modality-specific training. However, real-world deployment faces major challenges, including data scarcity, domain shift between modalities (e.g., CT vs. MRI), and privacy restrictions that prevent data sharing. To address these issues, we propose FedGIN, a Federated Learning (FL) framework that enables multimodal organ segmentation without sharing raw patient data. Our method integrates a lightweight Global Intensity Non-linear (GIN) augmentation module that harmonizes modality-specific intensity distributions during local training. We evaluated FedGIN using two types of datasets: an imputed dataset and a complete dataset. In the limited dataset scenario, the model was initially trained using only MRI data, and CT data was added to assess its performance improvements. In the complete dataset scenario, both MRI and CT data were fully utilized for training on all clients. In the limited-data scenario, FedGIN achieved a 12 to 18% improvement in 3D Dice scores on MRI test cases compared to FL without GIN and consistently outperformed local baselines. In the complete dataset scenario, FedGIN demonstrated near-centralized performance, with a 30% Dice score improvement over the MRI-only baseline and a 10% improvement over the CT-only baseline, highlighting its strong cross-modality generalization under privacy constraints.

cs.CV↗