arXiv subjects

Sadjad Arzash

Publications and source records attributed to Sadjad Arzash.

9 recordsLinked to original sources

arXiv2023

Rigidity of Epithelial Tissues as a Double Optimization Problem

How do cells tune emergent properties at the scale of tissues? One class of such emergent behaviors are rigidity transitions, in which a tissue changes from a solid-like to a fluid-like state or vice versa. Here, we introduce a new way for a tissue described by a vertex model to tune its rigidity, by using ``tunable degrees of freedom." We use the vertex model elastic energy as a cost function and the cell stiffnesses, target shapes, and target areas as different sets of degrees of freedom describing cell-cell interactions that can be tuned to minimize the cost function. We show that the rigidity transition is unaffected when cell stiffnesses are treated as tunable degrees of freedom. When preferred shapes or areas are treated as tunable degrees of freedom, however, induced spatial correlations in target cell shapes or areas shift the rigidity transition. These observations suggest that tissues can coordinate changes in cell-scale properties, treated here as tunable degrees of freedom, to achieve desired tissue-scale behaviors.

cond-mat.soft↗

arXiv2023

Effects of local incompressibility on the rheology of composite biopolymer networks

Fibrous networks such as collagen are common in biological systems. Recent theoretical and experimental efforts have shed light on the mechanics of single component networks. Most real biopolymer networks, however, are composites made of elements with different rigidity. For instance, the extracellular matrix in mammalian tissues consists of stiff collagen fibers in a background matrix of flexible polymers such as hyaluronic acid (HA). The interplay between different biopolymer components in such composite networks remains unclear. In this work, we use 2D coarse-grained models to study the nonlinear strain-stiffening behavior of composites. We introduce a local volume constraint to model the incompressibility of HA. We also perform rheology experiments on composites of collagen with HA. We demonstrate both theoretically and experimentally that the linear shear modulus of composite networks can be increased by approximately an order of magnitude above the corresponding moduli of the pure components. Our model shows that this synergistic effect can be understood in terms of the local incompressibility of HA, which acts to suppress density fluctuations of the collagen matrix with which it is entangled.

cond-mat.soft↗

arXiv2023

Mechanical criticality of fiber networks at a finite temperature

At zero temperature, spring networks with connectivity below Maxwell's isostatic threshold undergo a mechanical phase transition from a floppy state at small strains to a rigid state for applied shear strain above a critical strain threshold. Disordered networks in the floppy mechanical regime can be stabilized by entropic effects at finite temperature. We develop a scaling theory based on a real-space renormalization approach for this mechanical phase transition at finite temperature, yielding relationships between various scaling exponents. Using Monte Carlo simulations, we verify these scaling relations and identify anomalous entropic elasticity with sub-linear $T$-dependence in the linear elastic regime. While our results are consistent prior studies of phase behavior near the isostatic point, the present work also makes predictions relevant to the broad class of disordered thermal semiflexible polymer networks for which the connectivity generally lies far below the isostatic threshold.

cond-mat.soft↗

arXiv2022

Mechanics of fiber networks under a bulk strain

Biopolymer networks are common in biological systems from the cytoskeleton of individual cells to collagen in the extracellular matrix. The mechanics of these systems under applied strain can be explained in some cases by a phase transition from soft to rigid states. For collagen networks, it has been shown that this transition is critical in nature and it is predicted to exhibit diverging fluctuations near a critical strain that depends on the network's connectivity and structure. Whereas prior work focused mostly on shear deformation that is more accessible experimentally, here we study the mechanics of such networks under an applied bulk or isotropic extension. We confirm that the bulk modulus of subisostatic fiber networks exhibits similar critical behavior as a function of bulk strain. We find different non-mean-field exponents for bulk as opposed to shear. We also confirm a similar hyperscaling relation to what previously found for shear.

cond-mat.soft↗

arXiv2021

Shear-induced phase transition and critical exponents in 3D fiber networks

When subject to applied strain, fiber networks exhibit nonlinear elastic stiffening. Recent theory and experiements have shown that this phenomenon is controlled by an underlying mechanical phase transition that is critical in nature. Growing simulation evidence points to non-mean-field behavior for this transition and a hyperscaling relation has been proposed to relate the corresponding critical exponents. Here, we report simulations on two distinct network structures in 3D. By performing finite-size scaling analysis, we test hyperscaling and identify various critical exponents. From the apparent validity of hyperscaling, as well as the non-mean-field exponents we observe, our results suggest that the upper critical dimension for the strain-controlled phase transition is above three, in contrast to the jamming transition that represents another athermal, mechanical phase transition.

cond-mat.soft↗

arXiv2020

Finite size effects in critical fiber networks

Fibrous networks such as collagen are common in physiological systems. One important function of these networks is to provide mechanical stability for cells and tissues. At physiological levels of connectivity, such networks would be mechanically unstable with only central-force interactions. While networks can be stabilized by bending interactions, it has also been shown that they exhibit a critical transition from floppy to rigid as a function of applied strain. Beyond a certain strain threshold, it is predicted that underconstrained networks with only central-force interactions exhibit a discontinuity in the shear modulus. We study the finite-size scaling behavior of this transition and identify both the mechanical discontinuity and critical exponents in the thermodynamic limit. We find both non-mean-field behavior and evidence for a hyperscaling relation for the critical exponents, for which the network stiffness is analogous to the heat capacity for thermal phase transitions. Further evidence for this is also found in the self-averaging properties of fiber networks.

cond-mat.soft↗

arXiv2019

Nonlinear Poisson effect governed by mechanical critical transition

Under extensional strain, fiber networks can exhibit an anomalously large and nonlinear Poisson effect accompanied by a dramatic transverse contraction and volume reduction for applied strains as small as a few percent. We demonstrate that this phenomenon is controlled by a collective mechanical phase transition that occurs at a critical uniaxial strain that depends on network connectivity. This transition is punctuated by an anomalous peak in the apparent Poisson's ratio and other critical signatures such as diverging nonaffine strain fluctuations.

cond-mat.soft↗

arXiv2018

Stress-stabilized sub-isostatic fiber networks in a rope-like limit

The mechanics of disordered fibrous networks such as those that make up the extracellular matrix are strongly dependent on the local connectivity or coordination number. For biopolymer networks this coordination number is typically between three and four. Such networks are sub-isostatic and linearly unstable to deformation with only central force interactions, but exhibit a mechanical phase transition between floppy and rigid states under strain. Introducing weak bending interactions stabilizes these networks and suppresses the critical signatures of this transition. We show that applying external stress can also stabilize sub-isostatic networks with only tensile central force interactions, i.e., a rope-like potential. Moreover, we find that the linear shear modulus shows a power law scaling with the external normal stress, with a non-mean-field exponent. For networks with finite bending rigidity, we find that the critical stain shifts to lower values under prestress.

cond-mat.soft↗

arXiv2018

Scaling theory for mechanical critical behavior in fiber networks

As a function of connectivity, spring networks exhibit a critical transition between floppy and rigid phases at an isostatic threshold. For connectivity below this threshold, fiber networks were recently shown theoretically to exhibit a rigidity transition with corresponding critical signatures as a function of strain. Experimental collagen networks were also shown to be consistent with these predictions. We develop a scaling theory for this strain-controlled transition. Using a real-space renormalization approach, we determine relations between the critical exponents governing the transition, which we verify for the strain-controlled transition using numerical simulations of both triangular lattice-based and packing-derived fiber networks.

cond-mat.soft↗