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Samantha Hartzell

Publications and source records attributed to Samantha Hartzell.

2 recordsLinked to original sources

Assessing global drivers of forest transpiration using clustered machine learning models

Understanding the environmental drivers of forest transpiration is critical for improving global predictions of water availability and ecosystem health. Due to many competing controls on plant water stress and ecosystem transpiration, however, these drivers may vary widely across tree species which have adapted hydraulically to local climate conditions. Here, clustered machine learning models were used to analyze global drivers of forest transpiration rates using the SAPFLUXNET database. Sap flux data from a total of ninety-five sites spanning seven biomes were grouped using two clustering strategies: by biome and by plant functional type. Two supervised machine learning algorithms, a random forest algorithm and a neural network algorithm, were used to predict rates of sap flux for each cluster. The performance and feature importance in each model were analyzed and compared to evaluate the environmental variables that control each cluster's performance. By defining site clusters, these models are able to predict transpiration and its environmental drivers across a wide variety of geographical sites and tree species. Unlike models trained on the entire dataset, high-performing clustered models achieved R$^2$ values to measurement data in the range of 0.74 to 0.90, with the highest performance being achieved in mid-sized clusters of up to thirty-six sites. There was high variance in feature importance between clusters, indicating that key predictors of transpiration varied strongly across both plant functional type and biome. Overall, water-limited climates tended to be more controlled by soil moisture, whereas climates with high mean annual temperature tended to be more controlled by solar radiation and less dependent on air temperature. These findings provide insights into how forest transpiration responds to environmental factors across a wide range of climate types and tree species.

q-bio.QM

Unified representation of the C3, C4, and CAM photosynthetic pathways with the Photo3 model

Recently, interest in crassulacean acid metabolism (CAM) photosynthesis has risen and new, physiologically based CAM models have emerged. These models show promise, yet unlike the more widely used physiological models of C3 and C4 photosynthesis, their complexity has thus far inhibited their adoption in the general community. Indeed, most efforts to assess the potential of CAM still rely on empirically based environmental productivity indices, which makes uniform comparisons between CAM and non-CAM species difficult. In order to represent C3, C4, and CAM photosynthesis in a consistent, physiologically based manner, we introduce the Photo3 model. This work builds on a common photosynthetic and hydraulic core and adds additional components to depict the circadian rhythm of CAM photosynthesis and the carbon-concentrating mechanism of C4 photosynthesis. This allows consistent comparisons of the three photosynthetic types for the first time. It also allows the representation of intermediate C3-CAM behavior through the adjustment of a single model parameter. Model simulations of *Opuntia ficus-indica* (CAM), *Sorghum bicolor* (C4), and *Triticum aestivum* (C3) capture the diurnal behavior of each species as well as the cumulative effects of long-term water limitation. The results show potential for use in understanding CAM productivity, ecology, and climate feedbacks and in evaluating the tradeoffs between C3, C4, and CAM photosynthesis.

q-bio.QM