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Samath Dharmarathne

Publications and source records attributed to Samath Dharmarathne.

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AVSim -- Realistic Simulation Framework for Airborne and Vector-Borne Disease Dynamics

Computational disease modeling plays a crucial role in understanding and controlling the transmission of infectious diseases. While agent-based models (ABMs) provide detailed insights into individual dynamics, accurately replicating human motion remains challenging due to its complex, multi-factorial nature. Most existing frameworks fail to model realistic human motion, leading to oversimplified and less realistic behavior modeling. Furthermore, many current models rely on synthetic assumptions and fail to account for realistic environmental structures, transportation systems, and behavioral heterogeneity across occupation groups. To address these limitations, we introduce AVSim, an agent-based simulation framework designed to model airborne and vector-borne disease dynamics under realistic conditions. A distinguishing feature of AVSim is its ability to accurately model the dual nature of human mobility (both the destinations individuals visit and the duration of their stay) by utilizing GPS traces from real-world participants, characterized by occupation. This enables a significantly more granular and realistic representation of human movement compared to existing approaches. Furthermore, spectral clustering combined with graph-theoretic analysis is used to uncover latent behavioral patterns within occupations, enabling fine-grained modeling of agent behavior. We validate the synthetic human mobility patterns against ground-truth GPS data and demonstrate AVSim's capabilities via simulations of COVID-19 and dengue. The results highlight AVSim's capacity to trace infection pathways, identify high-risk zones, and evaluate interventions such as vaccination, quarantine, and vector control with occupational and geographic specificity.

eess.SY

Devising PoPStat: A Metric Bridging Population Pyramids with Global Disease Mortality

Understanding the relationship between population dynamics and disease-specific mortality is central to evidence-based health policy. This study introduces two novel metrics, PoPDivergence and PoPStat, one to quantify the difference between population pyramids and the other to assess the strength and nature of their association with the mortality of a given disease. PoPDivergence, based on Kullback-Leibler divergence, measures deviations between a countrys population pyramid and a reference pyramid. PoPStat is the correlation between these deviations and the log form of disease-specific mortality rates. The reference population is selected by a brute-force optimization that maximizes this correlation. Utilizing mortality data from the Global Burden of Disease 2021 and population statistics from the United Nations, we applied these metrics to 371 diseases across 204 countries. Results reveal that PoPStat outperforms traditional indicators such as median age, GDP per capita, and Human Development Index in explaining the mortality of most diseases. Noncommunicable diseases (NCDs) like neurological disorders and cancers, communicable diseases (CDs) like neglected tropical diseases, and maternal and neonatal diseases were tightly bound to the underlying demographic attributes whereas NCDs like diabetes, CDs like respiratory infections and injuries including self-harm and interpersonal violence were weakly associated with population pyramid shapes. Notably, except for diabetes, the NCD mortality burden was shared by constrictive population pyramids, while mortality of communicable diseases, maternal and neonatal causes and injuries were largely borne by expansive pyramids. Therefore, PoPStat provides insights into demographic determinants of health and empirical support for models on epidemiological transition. Code and scripts: https://github.com/Buddhi19/DevisingPoPStat.git

stat.AP