arXiv subjects

Samudrajit Thapa

Publications and source records attributed to Samudrajit Thapa.

9 recordsLinked to original sources

arXiv2025

Multifractional Brownian motion with telegraphic, stochastically varying exponent

The diversity of diffusive systems exhibiting long-range correlations characterized by a stochastically varying Hurst exponent calls for a generic multifractional model. We present a simple, analytically tractable model which fills the gap between mathematical formulations of multifractional Brownian motion and empirical studies. In our model, called telegraphic multifractional Brownian motion, the Hurst exponent is modelled by a smoothed telegraph process which results in a stationary beta distribution of exponents as observed in biological experiments. We also provide a methodology to identify our model in experimental data and present concrete examples from biology, climate and finance to demonstrate the efficacy of our approach.

cond-mat.stat-mech↗

arXiv2024

Optimal conditions for first passage of jump processes with resetting

We investigate the first passage time beyond a barrier located at $b\geq0$ of a random walk with independent and identically distributed jumps, starting from $x_0=0$. The walk is subject to stochastic resetting, meaning that after each step the evolution is restarted with fixed probability $r$. We consider a resetting protocol that is an intermediate situation between a random walk ($r=0$) and an uncorrelated sequence of jumps all starting from the origin ($r=1$), and derive a general condition for determining when restarting the process with $0<r<1$ is more efficient than restarting after each jump. If the mean first passage time of the process in absence of resetting is larger than that of the sequence of jumps, this condition is sufficient to establish the existence of an optimal $0<r^*<1$ that represents the best strategy, outperforming both $r=0$ and $r=1$. Our findings are discussed by considering two important examples of jump processes, for which we draw the phase diagram illustrating the regions of the parameter space where resetting with some $0<r^*<1$ is optimal.

cond-mat.stat-mech↗

arXiv2024

Nonequilibrium Probability Currents in Optically-Driven Colloidal Suspensions

In the absence of directional motion it is often hard to recognize athermal fluctuations. Probability currents provide such a measure in terms of the rate at which they enclose area in the reduced phase space. We measure this area enclosing rate for trapped colloidal particles, where only one particle is driven. By combining experiment, theory, and simulation, we single out the effect of the different time scales in the system on the measured probability currents. In this controlled experimental setup, particles interact hydrodynamically. These interactions lead to a strong spatial dependence of the probability currents and to a local influence of athermal agitation. In a multiple-particle system, we show that even when the driving acts only on one particle, probability currents occur between other, non-driven particles. This may have significant implications for the interpretation of fluctuations in biological systems containing elastic networks in addition to a suspending fluid.

cond-mat.soft↗

arXiv2024

Emergent clustering due to quorum sensing interactions in active matter

Many organisms in nature use local interactions to generate global cooperative phenomena. To unravel how the behavior of individuals generates effective interactions within a group, we introduce a simple model, wherein each agent senses the presence of others nearby and changes its physical motion accordingly. This generates non-physical, or virtual interactions between agents. We study the radial distribution function and the cluster size distribution to quantify the emergent interactions for both social and anti-social behavior; We identify social behavior as when an agent exhibits a tendency to remain in the vicinity of other agents, whereas anti-social behavior as when it displays a tendency to escape from the vicinity of others. Using Langevin dynamics simulations in two and three spatial dimensions, we discover that under certain conditions, positive correlations, which indicate attraction can emerge even in the case of anti-social behavior. Our results are potentially useful for designing robotic swimmers that can swim collectively only based on sensing the distance to their neighbors, without measuring any orientational information.

cond-mat.stat-mech↗

arXiv2022

Fractional Brownian motion with random Hurst exponent: accelerating diffusion and persistence transitions

Fractional Brownian motion, a Gaussian non-Markovian self-similar process with stationary long-correlated increments, has been identified to give rise to the anomalous diffusion behavior in a great variety of physical systems. The correlation and diffusion properties of this random motion are fully characterized by its index of self-similarity, or the Hurst exponent. However, recent single particle tracking experiments in biological cells revealed highly complicated anomalous diffusion phenomena that can not be attributed to a class of self-similar random processes. Inspired by these observations, we here study the process which preserves the properties of fractional Brownian motion at a single trajectory level, however, the Hurst index randomly changes from trajectory to trajectory. We provide a general mathematical framework for analytical, numerical and statistical analysis of fractional Brownian motion with random Hurst exponent. The explicit formulas for probability density function, mean square displacement and autocovariance function of the increments are presented for three generic distributions of the Hurst exponent, namely two-point, uniform and beta distributions. The important features of the process studied here are accelerating diffusion and persistence transition which we demonstrate analytically and numerically.

cond-mat.stat-mech↗

arXiv2022

Bayesian inference of scaled versus fractional Brownian motion

We present a Bayesian inference scheme for scaled Brownian motion, and investigate its performance on synthetic data for parameter estimation and model selection in a combined inference with fractional Brownian motion. We include the possibility of measurement noise in both models. We find that for trajectories of a few hundred time points the procedure is able to resolve well the true model and parameters. Using the prior of the synthetic data generation process also for the inference, the approach is optimal based on decision theory. We include a comparison with inference using a prior different from the data generating one.

stat.ME↗

arXiv2021

Bayesian inference of Lévy walks via hidden Markov models

The Lévy walk is a non-Brownian random walk model that has been found to describe anomalous dynamic phenomena in diverse fields ranging from biology over quantum physics to ecology. Recurrently occurring problems are to examine whether observed data are successfully quantified by a model classified as Lévy walks or not and extract the best model parameters in accordance with the data. Motivated by such needs, we propose a hidden Markov model for Lévy walks and computationally realize and test the corresponding Bayesian inference method. We introduce a Markovian decomposition scheme to approximate a renewal process governed by a power-law waiting time distribution. Using this, we construct the likelihood function of Lévy walks based on a hidden Markov model and the forward algorithm. With the Lévy walk trajectories simulated at various conditions, we perform the Bayesian inference for parameter estimation and model classification. We show that the power-law exponent of the flight-time distribution can be successfully extracted even at the condition that the mean-squared displacement does not display the expected scaling exponent due to the noise or insufficient trajectory length. It is also demonstrated that the Bayesian method performs remarkably inferring the Lévy walk trajectories from given unclassified trajectory data set if the noise level is moderate.

physics.bio-ph↗

arXiv2021

Objective comparison of methods to decode anomalous diffusion

Deviations from Brownian motion leading to anomalous diffusion are found in transport dynamics from quantum physics to life sciences. The characterization of anomalous diffusion from the measurement of an individual trajectory is a challenging task, which traditionally relies on calculating the trajectory mean squared displacement. However, this approach breaks down for cases of practical interest, e.g., short or noisy trajectories, heterogeneous behaviour, or non-ergodic processes. Recently, several new approaches have been proposed, mostly building on the ongoing machine-learning revolution. To perform an objective comparison of methods, we gathered the community and organized an open competition, the Anomalous Diffusion challenge (AnDi). Participating teams applied their algorithms to a commonly-defined dataset including diverse conditions. Although no single method performed best across all scenarios, machine-learning-based approaches achieved superior performance for all tasks. The discussion of the challenge results provides practical advice for users and a benchmark for developers.

physics.data-an↗

arXiv2020

Leveraging large-deviation statistics to decipher the stochastic properties of measured trajectories

Extensive time-series encoding the position of particles such as viruses, vesicles, or individual proteins are routinely garnered in single-particle tracking experiments or supercomputing studies. They contain vital clues on how viruses spread or drugs may be delivered in biological cells. Similar time-series are being recorded of stock values in financial markets and of climate data. Such time-series are most typically evaluated in terms of time-average mean-squared displacements, which remain random variables for finite measurement times. Their statistical properties are different for different physical stochastic processes, thus allowing us to extract valuable information on the stochastic process itself. To exploit the full potential of the statistical information encoded in measured time-series we here propose an easy-to-implement and computationally inexpensive new methodology, based on deviations of the time-averaged mean-squared displacement from its ensemble average counterpart. Specifically, we use the upper bound of these deviations for Brownian motion to check the applicability of this approach to simulated and real data sets. By comparing the probability of deviations for different data sets, we demonstrate how the theoretical bound for Brownian motion reveals additional information about observed stochastic processes. We apply the large-deviation method to data sets of tracer beads tracked in aqueous solution, tracer beads measured in mucin hydrogels, and of geographic surface temperature anomalies. Our analysis shows how the large-deviation properties can be efficiently used as a simple yet effective routine test to reject the Brownian motion hypothesis and unveil crucial information on statistical properties such as ergodicity breaking and short-time correlations.

cond-mat.stat-mech↗