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Samuel Kim

Publications and source records attributed to Samuel Kim.

At least 19 recordsLinked to original sources

Interpretable Depression Detection from Social Media Text Using LLM-Derived Embeddings

Accurate and interpretable detection of depressive language in social media can support early identification of mental health conditions and inform timely interventions. In this paper, we investigate the use of large language models (LLMs) and traditional machine learning classifiers for three social media-based mental health prediction tasks: binary depression classification, depression severity classification, and differential diagnosis among depression, PTSD, and anxiety. We compare zero-shot LLMs with supervised classifiers trained on conventional text embeddings, psycholinguistic features, and embeddings derived from LLM-generated mental health summaries. Across multiple publicly available social media text datasets and five-fold cross-validation experiments, we find that zero-shot LLMs exhibit strong performance and generalization in binary depression classification, but struggle with fine-grained severity prediction. In contrast, supervised models trained on LLM summary embeddings often achieve more accurate and consistent performance, particularly for multi-class and ordinal classification tasks. These findings highlight both the strengths and limitations of current LLMs for mental health prediction and suggest that using LLMs as semantic interpreters, rather than solely as end-to-end classifiers, may provide a promising direction for building more effective and interpretable mental health assessment systems.

cs.CL

Wide-Angle, Multiplexed Backscatter Communications Using a Dynamic Metasurface-Backed Luneburg Lens

Backscatter communications is attractive for its low power requirements due to the lack of actively radiating components; however, commonly used devices are typically limited in range and functionality. Here, we design and demonstrate a backscatter device consisting of a flattened Luneburg lens combined with a spatially-tunable dynamic metasurface. Using quasi-conformal transformation optics (QCTO), we design a flattened, additively manufactured Luneburg lens that focuses incoming waves over a wide field-of-view onto its flattened focal plane. When a reflective surface is placed at the focal plane, the flattened Luneburg lens retroreflects, enabling long-range backscatter communications over an extremely large field-of-view ($\pm30\degree$) and bandwidth. The dynamic metasurface is designed to modulated the reflected phase across the S-band (2-4 GHz) with fine spatial control. Thus, when combined with the flattened Luneburg lens, the device is able to modulate the retroreflected signal to achieve backscatter communications. We experimentally demonstrate full phase control of the backscattered signal across a range of incidence angles, spatial multiplexing, and secure communications against eavesdroppers by actively suppressing or randomizing signals in unwanted directions. The metasurface-backed Luneburg lens device offers a low-power solution for long-range wireless networks with advanced capabilities.

physics.optics

VisAnatomy: An SVG Chart Corpus with Fine-Grained Semantic Labels

Chart corpora, which comprise data visualizations and their semantic labels, are crucial for advancing visualization research. However, the labels in most existing corpora are high-level (e.g., chart types), hindering their utility for broader applications in the era of AI. In this paper, we contribute VISANATOMY, a corpus containing 942 real-world SVG charts produced by over 50 tools, encompassing 40 chart types and featuring structural and stylistic design variations. Each chart is augmented with multi-level fine-grained labels on its semantic components, including each graphical element's type, role, and position, hierarchical groupings of elements, group layouts, and visual encodings. In total, VISANATOMY provides labels for more than 383k graphical elements. We demonstrate the richness of the semantic labels by comparing VISANATOMY with existing corpora. We illustrate its usefulness through four applications: semantic role inference for SVG elements, chart semantic decomposition, chart type classification, and content navigation for accessibility. Finally, we discuss research opportunities to further improve VISANATOMY.

cs.HC

Work Smarter Not Harder: Simple Imitation Learning with CS-PIBT Outperforms Large Scale Imitation Learning for MAPF

Multi-Agent Path Finding (MAPF) is the problem of effectively finding efficient collision-free paths for a group of agents in a shared workspace. The MAPF community has largely focused on developing high-performance heuristic search methods. Recently, several works have applied various machine learning (ML) techniques to solve MAPF, usually involving sophisticated architectures, reinforcement learning techniques, and set-ups, but none using large amounts of high-quality supervised data. Our initial objective in this work was to show how simple large scale imitation learning of high-quality heuristic search methods can lead to state-of-the-art ML MAPF performance. However, we find that, at least with our model architecture, simple large scale (700k examples with hundreds of agents per example) imitation learning does \textit{not} produce impressive results. Instead, we find that by using prior work that post-processes MAPF model predictions to resolve 1-step collisions (CS-PIBT), we can train a simple ML MAPF model in minutes that dramatically outperforms existing ML MAPF policies. This has serious implications for all future ML MAPF policies (with local communication) which currently struggle to scale. In particular, this finding implies that future learnt policies should (1) always use smart 1-step collision shields (e.g. CS-PIBT), (2) always include the collision shield with greedy actions as a baseline (e.g. PIBT) and (3) motivates future models to focus on longer horizon / more complex planning as 1-step collisions can be efficiently resolved.

cs.MA

Leveraging Federated Learning for Automatic Detection of Clopidogrel Treatment Failures

The effectiveness of clopidogrel, a widely used antiplatelet medication, varies significantly among individuals, necessitating the development of precise predictive models to optimize patient care. In this study, we leverage federated learning strategies to address clopidogrel treatment failure detection. Our research harnesses the collaborative power of multiple healthcare institutions, allowing them to jointly train machine learning models while safeguarding sensitive patient data. Utilizing the UK Biobank dataset, which encompasses a vast and diverse population, we partitioned the data based on geographic centers and evaluated the performance of federated learning. Our results show that while centralized training achieves higher Area Under the Curve (AUC) values and faster convergence, federated learning approaches can substantially narrow this performance gap. Our findings underscore the potential of federated learning in addressing clopidogrel treatment failure detection, offering a promising avenue for enhancing patient care through personalized treatment strategies while respecting data privacy. This study contributes to the growing body of research on federated learning in healthcare and lays the groundwork for secure and privacy-preserving predictive models for various medical conditions.

cs.LG

Data augmentation method for modeling health records with applications to clopidogrel treatment failure detection

We present a novel data augmentation method to address the challenge of data scarcity in modeling longitudinal patterns in Electronic Health Records (EHR) of patients using natural language processing (NLP) algorithms. The proposed method generates augmented data by rearranging the orders of medical records within a visit where the order of elements are not obvious, if any. Applying the proposed method to the clopidogrel treatment failure detection task enabled up to 5.3% absolute improvement in terms of ROC-AUC (from 0.908 without augmentation to 0.961 with augmentation) when it was used during the pre-training procedure. It was also shown that the augmentation helped to improve performance during fine-tuning procedures, especially when the amount of labeled training data is limited.

cs.LG

Multimodal Foundation Models for Material Property Prediction and Discovery

Artificial intelligence is transforming computational materials science, improving the prediction of material properties, and accelerating the discovery of novel materials. Recently, publicly available material data repositories have grown rapidly. This growth encompasses not only more materials but also a greater variety and quantity of their associated properties. Existing machine learning efforts in materials science focus primarily on single-modality tasks, i.e. relationships between materials and a single physical property, thus not taking advantage of the rich and multimodal set of material properties. Here, we introduce Multimodal Learning for Materials (MultiMat), which enables self-supervised multi-modality training of foundation models for materials. We demonstrate our framework's potential using data from the Materials Project database on multiple axes: (i) MultiMat achieves state-of-the-art performance for challenging material property prediction tasks; (ii) MultiMat enables novel and accurate material discovery via latent space similarity, enabling screening for stable materials with desired properties; and (iii) MultiMat encodes interpretable emergent features that may provide novel scientific insights.

cs.LG

Word Definitions from Large Language Models

Dictionary definitions are historically the arbitrator of what words mean, but this primacy has come under threat by recent progress in NLP, including word embeddings and generative models like ChatGPT. We present an exploratory study of the degree of alignment between word definitions from classical dictionaries and these newer computational artifacts. Specifically, we compare definitions from three published dictionaries to those generated from variants of ChatGPT. We show that (i) definitions from different traditional dictionaries exhibit more surface form similarity than do model-generated definitions, (ii) that the ChatGPT definitions are highly accurate, comparable to traditional dictionaries, and (iii) ChatGPT-based embedding definitions retain their accuracy even on low frequency words, much better than GloVE and FastText word embeddings.

cs.CL

Automatic prediction of mortality in patients with mental illness using electronic health records

Mental disorders impact the lives of millions of people globally, not only impeding their day-to-day lives but also markedly reducing life expectancy. This paper addresses the persistent challenge of predicting mortality in patients with mental diagnoses using predictive machine-learning models with electronic health records (EHR). Data from patients with mental disease diagnoses were extracted from the well-known clinical MIMIC-III data set utilizing demographic, prescription, and procedural information. Four machine learning algorithms (Logistic Regression, Random Forest, Support Vector Machine, and K-Nearest Neighbors) were used, with results indicating that Random Forest and Support Vector Machine models outperformed others, with AUC scores of 0.911. Feature importance analysis revealed that drug prescriptions, particularly Morphine Sulfate, play a pivotal role in prediction. We applied a variety of machine learning algorithms to predict 30-day mortality followed by feature importance analysis. This study can be used to assist hospital workers in identifying at-risk patients to reduce excess mortality.

cs.LG

Why Do Students Drop Out? University Dropout Prediction and Associated Factor Analysis Using Machine Learning Techniques

Graduation and dropout rates have always been a serious consideration for educational institutions and students. High dropout rates negatively impact both the lives of individual students and institutions. To address this problem, this study examined university dropout prediction using academic, demographic, socioeconomic, and macroeconomic data types. Additionally, we performed associated factor analysis to analyze which type of data would be most influential on the performance of machine learning models in predicting graduation and dropout status. These features were used to train four binary classifiers to determine if students would graduate or drop out. The overall performance of the classifiers in predicting dropout status had an average ROC-AUC score of 0.935. The data type most influential to the model performance was found to be academic data, with the average ROC-AUC score dropping from 0.935 to 0.811 when excluding all academic-related features from the data set. Preliminary results indicate that a correlation does exist between data types and dropout status.

cs.LG

Detection and prediction of clopidogrel treatment failures using longitudinal structured electronic health records

We propose machine learning algorithms to automatically detect and predict clopidogrel treatment failure using longitudinal structured electronic health records (EHR). By drawing analogies between natural language and structured EHR, we introduce various machine learning algorithms used in natural language processing (NLP) applications to build models for treatment failure detection and prediction. In this regard, we generated a cohort of patients with clopidogrel prescriptions from UK Biobank and annotated if the patients had treatment failure events within one year of the first clopidogrel prescription; out of 502,527 patients, 1,824 patients were identified as treatment failure cases, and 6,859 patients were considered as control cases. From the dataset, we gathered diagnoses, prescriptions, and procedure records together per patient and organized them into visits with the same date to build models. The models were built for two different tasks, i.e., detection and prediction, and the experimental results showed that time series models outperform bag-of-words approaches in both tasks. In particular, a Transformer-based model, namely BERT, could reach 0.928 AUC in detection tasks and 0.729 AUC in prediction tasks. BERT also showed competence over other time series models when there is not enough training data, because it leverages the pre-training procedure using large unlabeled data.

cs.LG

Reactor Antineutrino Spectral "Bump": Cumulative Fission Yields of Irradiated U-235 and Pu-239 Measured by HPGe Gamma-Ray Spectroscopy

Recent measurements of the reactor antineutrino emission show that there exists a spectral excess (the "bump") in the 5-7 MeV region when compared to the Huber-Muller prediction based on the conversion method. Analysis within an alternate prediction technique, the summation method, suggests that the bump could be due to excess contributions from a certain few of the beta-decaying fission products. However, it has been shown that when updated fission yield values are used in the summation method, the predicted excess vanishes. In the present preliminary study, fission yields for nuclides suspected of causing the neutrino spectral bump are investigated using gamma-ray spectroscopy of U-235 and Pu-239 samples freshly irradiated using the High Flux Isotope Reactor. For several of the suspect nuclides, the derived fission yields are consistent with JEFF3.3 fission yield library. The exception is the case of Cs-140 from Pu-239, where the discrepancy between the fitted and expected values suggests a potential error in the fission yield library. This highlights the importance of using accurate nuclear data libraries in the analysis of the reactor antineutrino spectra, and the need for ongoing efforts to improve these libraries.

nucl-ex

Multi-Site Clinical Federated Learning using Recursive and Attentive Models and NVFlare

The prodigious growth of digital health data has precipitated a mounting interest in harnessing machine learning methodologies, such as natural language processing (NLP), to scrutinize medical records, clinical notes, and other text-based health information. Although NLP techniques have exhibited substantial potential in augmenting patient care and informing clinical decision-making, data privacy and adherence to regulations persist as critical concerns. Federated learning (FL) emerges as a viable solution, empowering multiple organizations to train machine learning models collaboratively without disseminating raw data. This paper proffers a pragmatic approach to medical NLP by amalgamating FL, NLP models, and the NVFlare framework, developed by NVIDIA. We introduce two exemplary NLP models, the Long-Short Term Memory (LSTM)-based model and Bidirectional Encoder Representations from Transformers (BERT), which have demonstrated exceptional performance in comprehending context and semantics within medical data. This paper encompasses the development of an integrated framework that addresses data privacy and regulatory compliance challenges while maintaining elevated accuracy and performance, incorporating BERT pretraining, and comprehensively substantiating the efficacy of the proposed approach.

cs.LG

Predicting Development of Chronic Obstructive Pulmonary Disease and its Risk Factor Analysis

Chronic Obstructive Pulmonary Disease (COPD) is an irreversible airway obstruction with a high societal burden. Although smoking is known to be the biggest risk factor, additional components need to be considered. In this study, we aim to identify COPD risk factors by applying machine learning models that integrate sociodemographic, clinical, and genetic data to predict COPD development.

q-bio.QM

Predicting Students' Exam Scores Using Physiological Signals

While acute stress has been shown to have both positive and negative effects on performance, not much is known about the impacts of stress on students grades during examinations. To answer this question, we examined whether a correlation could be found between physiological stress signals and exam performance. We conducted this study using multiple physiological signals of ten undergraduate students over three different exams. The study focused on three signals, i.e., skin temperature, heart rate, and electrodermal activity. We extracted statistics as features and fed them into a variety of binary classifiers to predict relatively higher or lower grades. Experimental results showed up to 0.81 ROC-AUC with k-nearest neighbor algorithm among various machine learning algorithms.

cs.LG

Automated Discovery and Optimization of 3D Topological Photonic Crystals

Topological photonic crystals have received considerable attention for their ability to manipulate and guide light in unique ways. They are typically designed by hand based on careful analysis of their bands and mode profiles, but recent theoretical advances have revealed new and powerful insights into the connection between band symmetry, connectivity, and topology. Here we propose a combined global and local optimization framework that integrates a flexible symmetry-constrained level-set parameterization with standard gradient-free optimization algorithms to optimize topological photonic crystals, a problem setting where the objective function may be highly non-convex and non-continuous. Our framework can be applied to any symmetry-identifiable band topology, and we demonstrate its applicability to several prominent kinds of three-dimensional band topology, namely $\Gamma$-enforced nodal lines, Weyl points, and Chern insulators. Requiring no prior examples of topological photonic crystals or prior knowledge on the connection between structure and band topology, our approach indicates a path towards the automated discovery of novel topological photonic crystal designs.

physics.optics

Deep Learning and Symbolic Regression for Discovering Parametric Equations

Symbolic regression is a machine learning technique that can learn the governing formulas of data and thus has the potential to transform scientific discovery. However, symbolic regression is still limited in the complexity and dimensionality of the systems that it can analyze. Deep learning on the other hand has transformed machine learning in its ability to analyze extremely complex and high-dimensional datasets. We propose a neural network architecture to extend symbolic regression to parametric systems where some coefficient may vary but the structure of the underlying governing equation remains constant. We demonstrate our method on various analytic expressions, ODEs, and PDEs with varying coefficients and show that it extrapolates well outside of the training domain. The neural network-based architecture can also integrate with other deep learning architectures so that it can analyze high-dimensional data while being trained end-to-end. To this end we integrate our architecture with convolutional neural networks to analyze 1D images of varying spring systems.

cs.LG

Surrogate- and invariance-boosted contrastive learning for data-scarce applications in science

Deep learning techniques have been increasingly applied to the natural sciences, e.g., for property prediction and optimization or material discovery. A fundamental ingredient of such approaches is the vast quantity of labelled data needed to train the model; this poses severe challenges in data-scarce settings where obtaining labels requires substantial computational or labor resources. Here, we introduce surrogate- and invariance-boosted contrastive learning (SIB-CL), a deep learning framework which incorporates three ``inexpensive'' and easily obtainable auxiliary information sources to overcome data scarcity. Specifically, these are: 1)~abundant unlabeled data, 2)~prior knowledge of symmetries or invariances and 3)~surrogate data obtained at near-zero cost. We demonstrate SIB-CL's effectiveness and generality on various scientific problems, e.g., predicting the density-of-states of 2D photonic crystals and solving the 3D time-independent Schrodinger equation. SIB-CL consistently results in orders of magnitude reduction in the number of labels needed to achieve the same network accuracies.

cs.LG