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Samuel P Jarvis

Publications and source records attributed to Samuel P Jarvis.

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Force-Isosurface Simulations Probe the Limits of High-Resolution AFM on Three-Dimensional Molecules

High-resolution atomic force microscopy has transformed molecular imaging by revealing intramolecular structure directly in real space. A major remaining challenge is to extend this capability from largely planar molecules to non-planar molecular systems, where the most important structural information may be distributed across different heights above the surface. Here we use probe-particle-model simulations to predict the constant-force contours expected above molecules with increasing structural complexity. By extracting force isosurfaces from simulated three-dimensional force fields, we compare the molecular information retained in constant-height and constant-force images. For tilted benzene and pyrrole, constant-force images preserve the molecular framework across a range of adsorption angles and allow the molecular orientation to be recovered quantitatively. For larger non-planar and three-dimensional systems, simulations identify characteristic force-isosurface contrast associated with adsorption geometry, lower-lying molecular structure and curved molecular surfaces. These results provide target contrasts for force isosurfaces that could be extracted from three-dimensional force-mapping experiments, evaluating the molecular information retained by ideal force-isosurface imaging across progressively non-planar systems.

cond-mat.mes-hall

Origin of C$_{60}$ surface reconstruction resolved by atomic force microscopy

Surface adsorption of C$_{60}$ affects its chemical and electronic properties. Numerous studies have reported observation of bright and dark fullerenes on metal surfaces that suggest extensive surface reconstruction, however, the underpinning mechanism of the reconstruction remains under debate. Here we report tip-functionalised non-contact atomic force microscope (ncAFM) measurements which unambiguously reveal that C$_{60}$ fullerenes adsorb with three well-defined adsorption heights on the Cu(111) surface, consistent with theoretical reports of top-layer hollow site, single-atom vacancies, and surface nanopits. Using single molecule resolution $Δf(z)$ measurements we identify well defined adsorption heights specific to each site, confirming the presence of a complex vacancy model for C$_{60}$ monolayers on metal surfaces.

cond-mat.mtrl-sci