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Sanbo Qin

Publications and source records attributed to Sanbo Qin.

2 recordsLinked to original sources

Complex Effects of Salt on Small-Angle X-ray Scattering of BSA Originate From the Interplay of Ions and Hydration Water

Salts are an integral part of the environment for living systems and, therefore, understanding their effects on proteins and other biomolecules is of fundamental interest. Small-angle X-ray scattering (SAXS) of protein solutions can provide valuable information on salt effects, but extracting this information has been a significant challenge. For example, SAXS data of bovine serum albumin (BSA) at various salt concentrations were fit to three different spherical models. Here we combined the newly developed FMAPIq approach with explicit-solvent all-atom molecular dynamics simulations to show that the complex effects of salt on the SAXS of BSA originate from the interplay of ions and hydration water, leading to a general picture of protein-ion-water interactions.

q-bio.BM

A Fixed-Volume Variant of Gibbs-Ensemble Monte Carlo Yields Significant Speedup in Binodal Calculation

Gibbs-ensemble Monte Carlo (GEMC) is a powerful method for calculating the gas-liquid binodals of simple models and small molecules, but is too demanding computationally for realistic models of proteins. Here we discover that the main reason for long simulations is that volume exchange is very slow to achieve, and develop a variant GEMC without volume exchange. The key is to determine an appropriate initial density. Test of this fixed-volume GEMC method on Lennard-Jones and patchy particles shows enormous speedup without any loss of accuracy in predicted binodals. The fast speed of fixed-volume GEMC promises many applications.

physics.chem-ph