arXiv subjects

Sangwook Kang

Publications and source records attributed to Sangwook Kang.

9 recordsLinked to original sources

arXiv2026

Diagnostics for Semiparametric Accelerated Failure Time Models with R Package afttest

The semiparametric accelerated failure time (AFT) model offers a direct and interpretable alternative to the Cox proportional hazards model, yet practical diagnostic tools for this framework remain limited. We introduce afttest, an R package that implements martingale-residual-based goodness-of-fit procedures for semiparametric AFT models. In addition to the recently developed multiplier bootstrap diagnostics, the package introduces a new computationally efficient resampling strategy based on an influence-function linear approximation. Unlike the original approach, which requires repeatedly solving estimating equations for each bootstrap replicate, the proposed method avoids iterative optimization and substantially reduces computation time while preserving asymptotic validity. Both the standard multiplier bootstrap and the accelerated linear approximation are implemented, allowing users to balance finite-sample performance and computational scalability. The package supports rank-based and least-squares estimators, provides omnibus, link function, and functional form tests, and includes graphical tools for visualizing residual processes. An application to the Mayo Clinic primary biliary cirrhosis study illustrates the workflow.

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arXiv2025

Weighted Conformal Prediction for Survival Analysis under Covariate Shift

Reliable uncertainty quantification is essential in survival prediction, particularly in clinical settings where erroneous decisions carry high risk. Conformal prediction has attracted substantial attention as it offers a model-agnostic framework with finite-sample coverage guarantees. Extending it to right-censored outcomes poses nontrivial challenges. Several adaptations of conformal approaches for survival outcomes have been developed, but they either rely on restrictive censoring settings or substantial computation. A recent conformal approach for right-censored data constructs censoring-adjusted p-values and enables prediction intervals in general survival settings. However, the empirical coverage depends sensitively on heuristic tuning choices and its validity is limited to scenarios without covariate shift. In this paper, we establish theoretical justification for its prediction-set construction, providing a principled basis for defining prediction-set bounds, and extend the approach to covariate-shift settings. Simulation studies and a real data application demonstrate that the proposed method achieves robust coverage and coherent interval structure across varying censoring levels and covariate-shift settings.

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arXiv2025

Penalized Empirical Likelihood for Doubly Robust Causal Inference under Contamination in High Dimensions

We propose a doubly robust estimator for the average treatment effect in high dimensional low sample size observational studies, where contamination and model misspecification pose serious inferential challenges. The estimator combines bounded influence estimating equations for outcome modeling with covariate balancing propensity scores for treatment assignment, embedded within a penalized empirical likelihood framework using nonconvex regularization. It satisfies the oracle property by jointly achieving consistency under partial model correct ness, selection consistency, robustness to contamination, and asymptotic normality. For uncertainty quantification, we derive a finite sample confidence interval using cumulant generating functions and influence function corrections, avoiding reliance on asymptotic approximations. Simulation studies and applications to gene expression datasets (Golub and Khan) demonstrate superior performance in bias, error metrics, and interval calibration, highlighting the method robustness and inferential validity in HDLSS regimes. One notable aspect is that even in the absence of contamination, the proposed estimator and its confidence interval remain efficient compared to those of competing models.

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arXiv2025

Deep Neural Network Based Accelerated Failure Time Models using Rank Loss

An accelerated failure time (AFT) model assumes a log-linear relationship between failure times and a set of covariates. In contrast to other popular survival models that work on hazard functions, the effects of covariates are directly on failure times, whose interpretation is intuitive. The semiparametric AFT model that does not specify the error distribution is flexible and robust to departures from the distributional assumption. Owing to the desirable features, this class of models has been considered as a promising alternative to the popular Cox model in the analysis of censored failure time data. However, in these AFT models, a linear predictor for the mean is typically assumed. Little research has addressed the nonlinearity of predictors when modeling the mean. Deep neural networks (DNNs) have received a focal attention over the past decades and have achieved remarkable success in a variety of fields. DNNs have a number of notable advantages and have been shown to be particularly useful in addressing the nonlinearity. By taking advantage of this, we propose to apply DNNs in fitting AFT models using a Gehan-type loss, combined with a sub-sampling technique. Finite sample properties of the proposed DNN and rank based AFT model (DeepR-AFT) are investigated via an extensive stimulation study. DeepR-AFT shows a superior performance over its parametric or semiparametric counterparts when the predictor is nonlinear. For linear predictors, DeepR-AFT performs better when the dimensions of covariates are large. The proposed DeepR-AFT is illustrated using two real datasets, which demonstrates its superiority.

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arXiv2024

Efficient Case-Cohort Design using Balanced Sampling

A case-cohort design is a two-phase sampling design frequently used to analyze censored survival data in a cost-effective way, where a subcohort is usually selected using simple random sampling or stratified simple random sampling. In this paper, we propose an efficient sampling procedure based on balanced sampling when selecting a subcohort in a case-cohort design. A sample selected via a balanced sampling procedure automatically calibrates auxiliary variables. When fitting a Cox model, calibrating sampling weights has been shown to lead to more efficient estimators of the regression coefficients (Breslow et al., 2009a, b). The reduced variabilities over its counterpart with a simple random sampling are shown via extensive simulation experiments. The proposed design and estimation procedure are also illustrated with the well-known National Wilms Tumor Study dataset.

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arXiv2024

Adaptive Accelerated Failure Time modeling with a Semiparametric Skewed Error Distribution

The accelerated failure time (AFT) model is widely used to analyze relationships between variables in the presence of censored observations. However, this model relies on some assumptions such as the error distribution, which can lead to biased or inefficient estimates if these assumptions are violated. In order to overcome this challenge, we propose a novel approach that incorporates a semiparametric skew-normal scale mixture distribution for the error term in the AFT model. By allowing for more flexibility and robustness, this approach reduces the risk of misspecification and improves the accuracy of parameter estimation. We investigate the identifiability and consistency of the proposed model and develop a practical estimation algorithm. To evaluate the performance of our approach, we conduct extensive simulation studies and real data analyses. The results demonstrate the effectiveness of our method in providing robust and accurate estimates in various scenarios.

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arXiv2023

A general model-checking procedure for semiparametric accelerated failure time models

We propose a set of goodness-of-fit tests for the semiparametric accelerated failure time (AFT) model, including an omnibus test, a link function test, and a functional form test. This set of tests is derived from a multi-parameter cumulative sum process shown to follow asymptotically a zero-mean Gaussian process. Its evaluation is based on the asymptotically equivalent perturbed version, which enables both graphical and numerical evaluations of the assumed AFT model. Empirical p-values are obtained using the Kolmogorov-type supremum test, which provides a reliable approach for estimating the significance of both proposed un-standardized and standardized test statistics. The proposed procedure is illustrated using the induced smoothed rank-based estimator but is directly applicable to other popular estimators such as non-smooth rank-based estimator or least-squares estimator.Our proposed methods are rigorously evaluated using extensive simulation experiments that demonstrate their effectiveness in maintaining a Type I error rate and detecting departures from the assumed AFT model in practical sample sizes and censoring rates. Furthermore, the proposed approach is applied to the analysis of the Primary Biliary Cirrhosis data, a widely studied dataset in survival analysis, providing further evidence of the practical usefulness of the proposed methods in real-world scenarios. To make the proposed methods more accessible to researchers, we have implemented them in the R package afttest, which is publicly available on the Comprehensive R Archieve Network.

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arXiv2022

Smoothed quantile regression for censored residual life

We consider a regression modeling of the quantiles of residual life, remaining lifetime at a specific time. We propose a smoothed induced version of the existing non-smooth estimating equations approaches for estimating regression parameters. The proposed estimating equations are smooth in regression parameters, so solutions can be readily obtained via standard numerical algorithms. Moreover, the smoothness in the proposed estimating equations enables one to obtain a robust sandwich-type covariance estimator of regression estimators aided by an efficient resampling method. To handle data subject to right censoring, the inverse probability of censoring weight are used as weights. The consistency and asymptotic normality of the proposed estimator are established. Extensive simulation studies are conducted to validate the proposed estimator's performance in various finite samples settings. We apply the proposed method to dental study data evaluating the longevity of dental restorations.

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arXiv2012

Fast Accelerated Failure Time Modeling for Case-Cohort Data

Semiparametric accelerated failure time (AFT) models directly relate the predicted failure times to covariates and are a useful alternative to models that work on the hazard function or the survival function. For case-cohort data, much less development has been done with AFT models. In addition to the missing covariates outside of the sub-cohort in controls, challenges from AFT model inferences with full cohort are retained. The regression parameter estimator is hard to compute because the most widely used rank-based estimating equations are not smooth. Further, its variance depends on the unspecified error distribution, and most methods rely on computationally intensive bootstrap to estimate it. We propose fast rank-based inference procedures for AFT models, applying recent methodological advances to the context of case-cohort data. Parameters are estimated with an induced smoothing approach that smooths the estimating functions and facilitates the numerical solution. Variance estimators are obtained through efficient resampling methods for nonsmooth estimating functions that avoids full blown bootstrap. Simulation studies suggest that the recommended procedure provides fast and valid inferences among several competing procedures. Application to a tumor study demonstrates the utility of the proposed method in routine data analysis.

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