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Sanja Bojic

Publications and source records attributed to Sanja Bojic.

2 recordsLinked to original sources

Computational optimisation of slow cooling profiles for the cryopreservation of cells in suspension

The cryopreservation of biological materials is a highly complex process, as it involves numerous factors such as the cooling and thawing procedures, the administration of cryoprotective agents (CPAs), as well as the type and composition of cells. While theoretical work has yielded a better understanding of the processes occurring during cryopreservation, the design of cryopreservation protocols and their parameters is currently predominantly based on heuristic optimization. Here, we propose a mathematical method to optimise the cooling dynamics in slow-cooling, to reduce the risk of injury. We derive our method from first principles and provide computational predictions. Moreover, we assess the predictions with data obtained from the literature, as well as novel experimental results. Overall, we provide a generic computational approach to generate improved slow-cooling profiles for the cryopreservation of cells in suspension.

q-bio.OT

Seeding hESCs to achieve optimal colony clonality

Human embryonic stem cells (hESCs) and induced pluripotent stem cells (iPSCs) have promising clinical applications which often rely on clonally-homogeneous cell populations. To achieve this, cross-contamination and merger of colonies should be avoided. This motivates us to experimentally study and quantitatively model the growth of hESC colonies. The colony population is unexpectedly found to be multi-modal. We associate these sub-populations with different numbers of founding cells, and predict their occurrence by considering the role of cell-cell interactions and cell behaviour on randomly seeded cells. We develop a multi-population stochastic exponential model for the colony population which captures our experimental observations, and apply this to calculate the timescales for colony merges and over which colony size no longer predicts the number of founding cells. These results can be used to achieve the best outcome for homogeneous colony growth from different cell seeding densities.

q-bio.CB