arXiv subjects

Santiago Badia

Publications and source records attributed to Santiago Badia.

At least 55 records · Page 3Linked to original sources

arXiv2022

Conditioning of a Hybrid High-Order scheme on meshes with small faces

We conduct a condition number analysis of a Hybrid High-Order (HHO) scheme for the Poisson problem. We find the condition number of the statically condensed system to be independent of the number of faces in each element, or the relative size between an element and its faces. The dependence of the condition number on the polynomial degree is tracked. Next, we consider HHO schemes on cut background meshes, which are commonly used in unfitted discretisations. It is well known that the linear systems obtained on these meshes can be arbitrarily ill-conditioned due to the presence of sliver-cut and small-cut elements. We show that the condition number arising from HHO schemes on such meshes is not as negatively effected as those arising from conforming methods. We describe how the condition number can be improved by aggregating ill-conditioned elements with their neighbours.

math.NA↗

arXiv2022

Geometrical discretisations for unfitted finite elements on explicit boundary representations

Unfitted (also known as embedded or immersed) finite element approximations of partial differential equations are very attractive because they have much lower geometrical requirements than standard body-fitted formulations. These schemes do not require body-fitted unstructured mesh generation. In turn, the numerical integration becomes more involved, because one has to compute integrals on portions of cells (only the interior part). In practice, these methods are restricted to level-set (implicit) geometrical representations, which drastically limit their application. Complex geometries in industrial and scientific problems are usually determined by (explicit) boundary representations. In this work, we propose an automatic computational framework for the discretisation of partial differential equations on domains defined by oriented boundary meshes. The geometrical kernel that connects functional and geometry representations generates a two-level integration mesh and a refinement of the boundary mesh that enables the straightforward numerical integration of all the terms in unfitted finite elements. The proposed framework has been applied with success on all analysis-suitable oriented boundary meshes (almost 5,000) in the Thingi10K database and combined with an unfitted finite element formulation to discretise partial differential equations on the corresponding domains.

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arXiv2021

The software design of Gridap: a Finite Element package based on the Julia JIT compiler

We present the software design of Gridap, a novel finite element library written exclusively in the Julia programming language, which is being used by several research groups world-wide to simulate complex physical phenomena such as magnetohydrodynamics, photonics, weather modeling, non-linear solid mechanics, and fluid-structure interaction problems. The library provides a feature-rich set of discretization techniques for the numerical approximation of a wide range of PDEs, including linear, nonlinear, single-field, and multi-field equations. An expressive API allows users to define PDEs in weak form by a syntax close to the mathematical notation. While this is also available in previous codes, the main novelty of Gridap is that it implements this API without introducing a DSL plus a compiler of variational forms. Instead, it leverages the Julia just-in-time compiler to build efficient code, specialized for the concrete problem at hand. As a result, there is no need to use different languages for the computational back-end and the user front-end anymore, thus eliminating the so-called two-language problem. Gridap also provides a low-level API that is modular and extensible via the multiple-dispatch paradigm of Julia and provides easy access to the main building blocks of the library. The main contribution of this paper is the detailed presentation of the novel software abstractions behind the Gridap design that leverages the new software possibilities provided by the Julia language. The second main contribution of the article is a performance comparison against FEniCS. We measure CPU times needed to assemble discrete systems of linear equations for different problem types and show that the performance of Gridap is comparable to FEniCS, demonstrating that the new software design does not compromise performance. Gridap is freely available at Github and distributed under an MIT license.

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arXiv2021

A robust and scalable unfitted adaptive finite element framework for nonlinear solid mechanics

In this work, we bridge standard adaptive mesh refinement and coarsening on scalable octree background meshes and robust unfitted finite element formulations for the automatic and efficient solution of large-scale nonlinear solid mechanics problems posed on complex geometries, as an alternative to standard body-fitted formulations, unstructured mesh generation and graph partitioning strategies. We pay special attention to those aspects requiring a specialized treatment in the extension of the unfitted h-adaptive aggregated finite element method on parallel tree-based adaptive meshes, recently developed for linear scalar elliptic problems, to handle nonlinear problems in solid mechanics. In order to accurately and efficiently capture localized phenomena that frequently occur in nonlinear solid mechanics problems, we perform pseudo time-stepping in combination with h-adaptive dynamic mesh refinement and rebalancing driven by a-posteriori error estimators. The method is implemented considering both irreducible and mixed (u/p) formulations and thus it is able to robustly face problems involving incompressible materials. In the numerical experiments, both formulations are used to model the inelastic behavior of a wide range of compressible and incompressible materials. First, a selected set of benchmarks are reproduced as a verification step. Second, a set of experiments is presented with problems involving complex geometries. Among them, we model a cantilever beam problem with spherical hollows distributed in a Simple Cubic array. This test involves a discrete domain with up to 11.7M Degrees Of Freedom solved in less than two hours on 3072 cores of a parallel supercomputer.

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arXiv2021

Linking ghost penalty and aggregated unfitted methods

In this work, we analyse the links between ghost penalty stabilisation and aggregation-based discrete extension operators for the numerical approximation of elliptic partial differential equations on unfitted meshes. We explore the behavior of ghost penalty methods in the limit as the penalty parameter goes to infinity, which returns a strong version of these methods. We observe that these methods suffer locking in that limit. On the contrary, aggregated finite element spaces are locking-free because they can be expressed as an extension operator from well-posed to ill-posed degrees of freedom. Next, we propose novel ghost penalty methods that penalise the distance between the solution and its aggregation-based discrete extension. These methods are locking-free and converge to aggregated finite element methods in the infinite penalty parameter limit. We include an exhaustive set of numerical experiments in which we compare weak (ghost penalty) and strong (aggregated finite elements) schemes in terms of error quantities, condition numbers and sensitivity with respect to penalty coefficients on different geometries, intersection locations and mesh topologies.

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arXiv2021

Robust and scalable h-adaptive aggregated unfitted finite elements for interface elliptic problems

This work introduces a novel, fully robust and highly-scalable, $h$-adaptive aggregated unfitted finite element method for large-scale interface elliptic problems. The new method is based on a recent distributed-memory implementation of the aggregated finite element method atop a highly-scalable Cartesian forest-of-trees mesh engine. It follows the classical approach of weakly coupling nonmatching discretisations at the interface to model internal discontinuities at the interface. We propose a natural extension of a single-domain parallel cell aggregation scheme to problems with a finite number of interfaces; it straightforwardly leads to aggregated finite element spaces that have the structure of a Cartesian product. We demonstrate, through standard numerical analysis and exhaustive numerical experimentation on several complex Poisson and linear elasticity benchmarks, that the new technique enjoys the following properties: well-posedness, robustness with respect to cut location and material contrast, optimal ($h$-adaptive) approximation properties, high scalability and easy implementation in large-scale finite element codes. As a result, the method offers great potential as a useful finite element solver for large-scale interface problems modelled by partial differential equations.

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arXiv2021

The aggregated unfitted finite element method on parallel tree-based adaptive meshes

In this work, we present an adaptive unfitted finite element scheme that combines the aggregated finite element method with parallel adaptive mesh refinement. We introduce a novel scalable distributed-memory implementation of the resulting scheme on locally-adapted Cartesian forest-of-trees meshes. We propose a two-step algorithm to construct the finite element space at hand by means of a discrete extension operator that carefully mixes aggregation constraints of problematic degrees of freedom, which get rid of the small cut cell problem, and standard hanging degree of freedom constraints, which ensure trace continuity on non-conforming meshes. Following this approach, we derive a finite element space that can be expressed as the original one plus well-defined linear constraints. Moreover, it requires minimum parallelization effort, using standard functionality available in existing large-scale finite element codes. Numerical experiments demonstrate its optimal mesh adaptation capability, robustness to cut location and parallel efficiency, on classical Poisson $hp$-adaptivity benchmarks. Our work opens the path to functional and geometrical error-driven dynamic mesh adaptation with the aggregated finite element method in large-scale realistic scenarios. Likewise, it can offer guidance for bridging other scalable unfitted methods and parallel adaptive mesh refinement.

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arXiv2020

On differentiable local bounds preserving stabilization for Euler equations

This work presents the design of nonlinear stabilization techniques for the finite element discretization of Euler equations in both steady and transient form. Implicit time integration is used in the case of the transient form. A differentiable local bounds preserving method has been developed, which combines a Rusanov artificial diffusion operator and a differentiable shock detector. Nonlinear stabilization schemes are usually stiff and highly nonlinear. This issue is mitigated by the differentiability properties of the proposed method. Moreover, in order to further improve the nonlinear convergence, we also propose a continuation method for a subset of the stabilization parameters. The resulting method has been successfully applied to steady and transient problems with complex shock patterns. Numerical experiments show that it is able to provide sharp and well resolved shocks. The importance of the differentiability is assessed by comparing the new scheme with its non-differentiable counterpart. Numerical experiments suggest that, for up to moderate nonlinear tolerances, the method exhibits improved robustness and nonlinear convergence behavior for steady problems. In the case of transient problem, we also observe a reduction in the computational cost.

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arXiv2020

A user-guide to Gridap -- grid-based approximation of partial differential equations in Julia

We present Gridap, a new scientific software library for the numerical approximation of partial differential equations (PDEs) using grid-based approximations. Gridap is an open-source software project exclusively written in the Julia programming language. The main motivation behind the development of this library is to provide an easy-to-use framework for the development of complex PDE solvers in a dynamically typed style without sacrificing the performance of statically typed languages. This work is a tutorial-driven user guide to the library. It covers some popular linear and nonlinear PDE systems for scalar and vector fields, single and multi-field problems, conforming and nonconforming finite element discretizations, on structured and unstructured meshes of simplices and hexahedra.

cs.MS↗

arXiv2020

A generic finite element framework on parallel tree-based adaptive meshes

In this work we formally derive and prove the correctness of the algorithms and data structures in a parallel, distributed-memory, generic finite element framework that supports h-adaptivity on computational domains represented as forest-of-trees. The framework is grounded on a rich representation of the adaptive mesh suitable for generic finite elements that is built on top of a low-level, light-weight forest-of-trees data structure handled by a specialized, highly parallel adaptive meshing engine, for which we have identified the requirements it must fulfill to be coupled into our framework. Atop this two-layered mesh representation, we build the rest of data structures required for the numerical integration and assembly of the discrete system of linear equations. We consider algorithms that are suitable for both subassembled and fully-assembled distributed data layouts of linear system matrices. The proposed framework has been implemented within the FEMPAR scientific software library, using p4est as a practical forest-of-octrees demonstrator. A strong scaling study of this implementation when applied to Poisson and Maxwell problems reveals remarkable scalability up to 32.2K CPU cores and 482.2M degrees of freedom. Besides, a comparative performance study of FEMPAR and the state-of-the-art deal.ii finite element software shows at least comparative performance, and at most factor 2-3 improvements in the h-adaptive approximation of a Poisson problem with first- and second-order Lagrangian finite elements, respectively.

cs.MS↗

arXiv2020

Monotonicity-preserving finite element schemes with adaptive mesh refinement for hyperbolic problems

This work is focused on the extension and assessment of the monotonicity-preserving scheme in [3] and the local bounds preserving scheme in [5] to hierarchical octree adaptive mesh refinement (AMR). Whereas the former can readily be used on this kind of meshes, the latter requires some modifications. A key question that we want to answer in this work is whether to move from a linear to a nonlinear stabilization mechanism pays the price when combined with shock-adapted meshes. Whereas nonlinear (or shock-capturing) stabilization leads to improved accuracy compared to linear schemes, it also negatively hinders nonlinear convergence, increasing computational cost. We compare linear and nonlinear schemes in terms of the required computational time versus accuracy for several steady benchmark problems. Numerical results indicate that, in general, nonlinear schemes can be cost-effective for sufficiently refined meshes. Besides, it is also observed that it is better to refine further around shocks rather than use sharper shock capturing terms, which usually yield stiffer nonlinear problems. In addition, a new refinement criterion has been proposed. The proposed criterion is based on the graph Laplacian used in the definition of the stabilization method. Numerical results show that this shock detector performs better than the well-known Kelly estimator for problems with shocks or discontinuities.

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arXiv2020

Balancing domain decomposition by constraints associated with subobjects

A simple variant of the BDDC preconditioner in which constraints are imposed on a selected set of subobjects (subdomain subedges, subfaces and vertices between pairs of subedges) is presented. We are able to show that the condition number of the preconditioner is bounded by $C \big(1+\log (L/h)\big)^2$, where $C$ is a constant, and $h$ and $L$ are the characteristic sizes of the mesh and the subobjects, respectively. As $L$ can be chosen almost freely, the condition number can theoretically be as small as $O(1)$. We will discuss the pros and cons of the preconditioner and its application to heterogeneous problems. Numerical results on supercomputers are provided.

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arXiv2019

Embedded multilevel Monte Carlo for uncertainty quantification in random domains

The multilevel Monte Carlo (MLMC) method has proven to be an effective variance-reduction statistical method for Uncertainty quantification in PDE models. It combines approximations at different levels of accuracy using a hierarchy of meshes in a similar way as multigrid. The generation of body-fitted mesh hierarchies is only possible for simple geometries. On top of that, MLMC for random domains involves the generation of a mesh for every sample. Instead, here we consider the use of embedded methods which make use of simple background meshes of an artificial domain (a bounding-box) for which it is easy to define a mesh hierarchy, thus eliminating the need of body-fitted unstructured meshes, but can produce ill-conditioned discrete problems. To avoid this complication, we consider the recent aggregated finite element method (AgFEM). In particular, we design an embedded MLMC framework for (geometrically and topologically) random domains implicitly defined through a random level-set function, which makes use of a set of hierarchical background meshes and the AgFEM. Performance predictions from existing theory are verified statistically in three numerical experiments, namely the solution of the Poisson equation on a circular domain of random radius, the solution of the Poisson equation on a topologically identical but more complex domain, and the solution of a heat-transfer problem in a domain that has geometric and topological uncertainties. Finally, the use of AgFE is statistically demonstrated to be crucial for complex and uncertain geometries in terms of robustness and computational cost.

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arXiv2019

Maximum-principle preserving space-time isogeometric analysis

In this work we propose a nonlinear stabilization technique for convection-diffusion-reaction and pure transport problems discretized with space-time isogeometric analysis. The stabilization is based on a graph-theoretic artificial diffusion operator and a novel shock detector for isogeometric analysis. Stabilization in time and space directions are performed similarly, which allow us to use high-order discretizations in time without any CFL-like condition. The method is proven to yield solutions that satisfy the discrete maximum principle (DMP) unconditionally for arbitrary order. In addition, the stabilization is linearity preserving in a space-time sense. Moreover, the scheme is proven to be Lipschitz continuous ensuring that the nonlinear problem is well-posed. Solving large problems using a space-time discretization can become highly costly. Therefore, we also propose a partitioned space-time scheme that allows us to select the length of every time slab, and solve sequentially for every subdomain. As a result, the computational cost is reduced while the stability and convergence properties of the scheme remain unaltered. In addition, we propose a twice differentiable version of the stabilization scheme, which enjoys the same stability properties while the nonlinear convergence is significantly improved. Finally, the proposed schemes are assessed with numerical experiments. In particular, we considered steady and transient pure convection and convection-diffusion problems in one and two dimensions.

math.NA↗

arXiv2019

Numerical modelling of heat transfer and experimental validation in Powder-Bed Fusion with the Virtual Domain Approximation

Among metal additive manufacturing technologies, powder-bed fusion features very thin layers and rapid solidification rates, leading to long build jobs and a highly localized process. Many efforts are being devoted to accelerate simulation times for practical industrial applications. The new approach suggested here, the virtual domain approximation, is a physics-based rationale for spatial reduction of the domain in the thermal finite-element analysis at the part scale. Computational experiments address, among others, validation against a large physical experiment of 17.5 $\mathrm{[cm^3]}$ of deposited volume in 647 layers. For fast and automatic parameter estimation at such level of complexity, a high-performance computing framework is employed. It couples FEMPAR-AM, a specialized parallel finite-element software, with Dakota, for the parametric exploration. Compared to previous state-of-the-art, this formulation provides higher accuracy at the same computational cost. This sets the path to a fully virtualized model, considering an upwards-moving domain covering the last printed layers.

cs.CE↗

arXiv2019

Distributed-memory parallelization of the aggregated unfitted finite element method

The aggregated unfitted finite element method (AgFEM) is a methodology recently introduced in order to address conditioning and stability problems associated with embedded, unfitted, or extended finite element methods. The method is based on removal of basis functions associated with badly cut cells by introducing carefully designed constraints, which results in well-posed systems of linear algebraic equations, while preserving the optimal approximation order of the underlying finite element spaces. The specific goal of this work is to present the implementation and performance of the method on distributed-memory platforms aiming at the efficient solution of large-scale problems. In particular, we show that, by considering AgFEM, the resulting systems of linear algebraic equations can be effectively solved using standard algebraic multigrid preconditioners. This is in contrast with previous works that consider highly customized preconditioners in order to allow one the usage of iterative solvers in combination with unfitted techniques. Another novelty with respect to the methods available in the literature is the problem sizes that can be handled with the proposed approach. While most of previous references discussing linear solvers for unfitted methods are based on serial non-scalable algorithms, we propose a parallel distributed-memory method able to efficiently solve problems at large scales. This is demonstrated by means of a weak scaling test defined on complex 3D domains up to 300M degrees of freedom and one billion cells on 16K CPU cores in the Marenostrum-IV platform. The parallel implementation of the AgFEM method is available in the large-scale finite element package FEMPAR.

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arXiv2019

A tutorial-driven introduction to the parallel finite element library FEMPAR v1.0.0

This work is a user guide to the FEMPAR scientific software library. FEMPAR is an open-source object-oriented framework for the simulation of partial differential equations (PDEs) using finite element methods on distributed-memory platforms. It provides a rich set of tools for numerical discretization and built-in scalable solvers for the resulting linear systems of equations. An application expert that wants to simulate a PDE-governed problem has to extend the framework with a description of the weak form of the PDE at hand (and additional perturbation terms for non-conforming approximations). We show how to use the library by going through three different tutorials. The first tutorial simulates a linear PDE (Poisson equation) in a serial environment for a structured mesh using both continuous and discontinuous Galerkin finite element methods. The second tutorial extends it with adaptive mesh refinement on octree meshes. The third tutorial is a distributed-memory version of the previous one that combines a scalable octree handler and a scalable domain decomposition solver. The exposition is restricted to linear PDEs and simple geometries to keep it concise. The interested user can dive into more tutorials available in the FEMPAR public repository to learn about further capabilities of the library, e.g., nonlinear PDEs and nonlinear solvers, time integration, multi-field PDEs, block preconditioning, or unstructured mesh handling.

cs.MS↗

arXiv2019

Scalable solvers for complex electromagnetics problems

In this work, we present scalable balancing domain decomposition by constraints methods for linear systems arising from arbitrary order edge finite element discretizations of multi-material and heterogeneous 3D problems. In order to enforce the continuity across subdomains of the method, we use a partition of the interface objects (edges and faces) into sub-objects determined by the variation of the physical coefficients of the problem. For multi-material problems, a constant coefficient condition is enough to define this sub-partition of the objects. For arbitrarily heterogeneous problems, a relaxed version of the method is defined, where we only require that the maximal contrast of the physical coefficient in each object is smaller than a predefined threshold. Besides, the addition of perturbation terms to the preconditioner is empirically shown to be effective in order to deal with the case where the two coefficients of the model problem jump simultaneously across the interface. The new method, in contrast to existing approaches for problems in curl-conforming spaces does not require spectral information whilst providing robustness with regard to coefficient jumps and heterogeneous materials. A detailed set of numerical experiments, which includes the application of the preconditioner to 3D realistic cases, shows excellent weak scalability properties of the implementation of the proposed algorithms.

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