arXiv subjects

Sara Atito

Publications and source records attributed to Sara Atito.

At least 37 records · Page 2Linked to original sources

arXiv2025

DeepChest: Dynamic Gradient-Free Task Weighting for Effective Multi-Task Learning in Chest X-ray Classification

While Multi-Task Learning (MTL) offers inherent advantages in complex domains such as medical imaging by enabling shared representation learning, effectively balancing task contributions remains a significant challenge. This paper addresses this critical issue by introducing DeepChest, a novel, computationally efficient and effective dynamic task-weighting framework specifically designed for multi-label chest X-ray (CXR) classification. Unlike existing heuristic or gradient-based methods that often incur substantial overhead, DeepChest leverages a performance-driven weighting mechanism based on effective analysis of task-specific loss trends. Given a network architecture (e.g., ResNet18), our model-agnostic approach adaptively adjusts task importance without requiring gradient access, thereby significantly reducing memory usage and achieving a threefold increase in training speed. It can be easily applied to improve various state-of-the-art methods. Extensive experiments on a large-scale CXR dataset demonstrate that DeepChest not only outperforms state-of-the-art MTL methods by 7% in overall accuracy but also yields substantial reductions in individual task losses, indicating improved generalization and effective mitigation of negative transfer. The efficiency and performance gains of DeepChest pave the way for more practical and robust deployment of deep learning in critical medical diagnostic applications. The code is publicly available at https://github.com/youssefkhalil320/DeepChest-MTL

cs.CV↗

arXiv2025

C3R: Channel Conditioned Cell Representations for unified evaluation in microscopy imaging

Immunohistochemical (IHC) images reveal detailed information about structures and functions at the subcellular level. However, unlike natural images, IHC datasets pose challenges for deep learning models due to their inconsistencies in channel count and configuration, stemming from varying staining protocols across laboratories and studies. Existing approaches build channel-adaptive models, which unfortunately fail to support out-of-distribution (OOD) evaluation across IHC datasets and cannot be applied in a true zero-shot setting with mismatched channel counts. To address this, we introduce a structured view of cellular image channels by grouping them into either context or concept, where we treat the context channels as a reference to the concept channels in the image. We leverage this context-concept principle to develop Channel Conditioned Cell Representations (C3R), a framework designed for unified evaluation on in-distribution (ID) and OOD datasets. C3R is a two-fold framework comprising a channel-adaptive encoder architecture and a masked knowledge distillation training strategy, both built around the context-concept principle. We find that C3R outperforms existing benchmarks on both ID and OOD tasks, while a trivial implementation of our core idea also outperforms the channel-adaptive methods reported on the CHAMMI benchmark. Our method opens a new pathway for cross-dataset generalization between IHC datasets, without requiring dataset-specific adaptation or retraining.

cs.CV↗

arXiv2025

One Model for ALL: Low-Level Task Interaction Is a Key to Task-Agnostic Image Fusion

Advanced image fusion methods mostly prioritise high-level missions, where task interaction struggles with semantic gaps, requiring complex bridging mechanisms. In contrast, we propose to leverage low-level vision tasks from digital photography fusion, allowing for effective feature interaction through pixel-level supervision. This new paradigm provides strong guidance for unsupervised multimodal fusion without relying on abstract semantics, enhancing task-shared feature learning for broader applicability. Owning to the hybrid image features and enhanced universal representations, the proposed GIFNet supports diverse fusion tasks, achieving high performance across both seen and unseen scenarios with a single model. Uniquely, experimental results reveal that our framework also supports single-modality enhancement, offering superior flexibility for practical applications. Our code will be available at https://github.com/AWCXV/GIFNet.

cs.CV↗

arXiv2024

Probabilistically Aligned View-unaligned Clustering with Adaptive Template Selection

In most existing multi-view modeling scenarios, cross-view correspondence (CVC) between instances of the same target from different views, like paired image-text data, is a crucial prerequisite for effortlessly deriving a consistent representation. Nevertheless, this premise is frequently compromised in certain applications, where each view is organized and transmitted independently, resulting in the view-unaligned problem (VuP). Restoring CVC of unaligned multi-view data is a challenging and highly demanding task that has received limited attention from the research community. To tackle this practical challenge, we propose to integrate the permutation derivation procedure into the bipartite graph paradigm for view-unaligned clustering, termed Probabilistically Aligned View-unaligned Clustering with Adaptive Template Selection (PAVuC-ATS). Specifically, we learn consistent anchors and view-specific graphs by the bipartite graph, and derive permutations applied to the unaligned graphs by reformulating the alignment between two latent representations as a 2-step transition of a Markov chain with adaptive template selection, thereby achieving the probabilistic alignment. The convergence of the resultant optimization problem is validated both experimentally and theoretically. Extensive experiments on six benchmark datasets demonstrate the superiority of the proposed PAVuC-ATS over the baseline methods.

cs.CV↗

arXiv2024

DiCoM -- Diverse Concept Modeling towards Enhancing Generalizability in Chest X-Ray Studies

Chest X-Ray (CXR) is a widely used clinical imaging modality and has a pivotal role in the diagnosis and prognosis of various lung and heart related conditions. Conventional automated clinical diagnostic tool design strategies relying on radiology reads and supervised learning, entail the cumbersome requirement of high quality annotated training data. To address this challenge, self-supervised pre-training has proven to outperform supervised pre-training in numerous downstream vision tasks, representing a significant breakthrough in the field. However, medical imaging pre-training significantly differs from pre-training with natural images (e.g., ImageNet) due to unique attributes of clinical images. In this context, we introduce Diverse Concept Modeling (DiCoM), a novel self-supervised training paradigm that leverages a student teacher framework for learning diverse concepts and hence effective representation of the CXR data. Hence, expanding beyond merely modeling a single primary label within an image, instead, effectively harnessing the information from all the concepts inherent in the CXR. The pre-trained model is subsequently fine-tuned to address diverse domain-specific tasks. Our proposed paradigm consistently demonstrates robust performance across multiple downstream tasks on multiple datasets, highlighting the success and generalizability of the pre-training strategy. To establish the efficacy of our methods we analyze both the power of learned representations and the speed of convergence (SoC) of our models. For diverse data and tasks, DiCoM is able to achieve in most cases better results compared to other state-of-the-art pre-training strategies. This when combined with the higher SoC and generalization capabilities positions DiCoM to be established as a foundation model for CXRs, a widely used imaging modality.

eess.IV↗

arXiv2024

C2C: Component-to-Composition Learning for Zero-Shot Compositional Action Recognition

Compositional actions consist of dynamic (verbs) and static (objects) concepts. Humans can easily recognize unseen compositions using the learned concepts. For machines, solving such a problem requires a model to recognize unseen actions composed of previously observed verbs and objects, thus requiring so-called compositional generalization ability. To facilitate this research, we propose a novel Zero-Shot Compositional Action Recognition (ZS-CAR) task. For evaluating the task, we construct a new benchmark, Something-composition (Sth-com), based on the widely used Something-Something V2 dataset. We also propose a novel Component-to-Composition (C2C) learning method to solve the new ZS-CAR task. C2C includes an independent component learning module and a composition inference module. Last, we devise an enhanced training strategy to address the challenges of component variations between seen and unseen compositions and to handle the subtle balance between learning seen and unseen actions. The experimental results demonstrate that the proposed framework significantly surpasses the existing compositional generalization methods and sets a new state-of-the-art. The new Sth-com benchmark and code are available at https://github.com/RongchangLi/ZSCAR_C2C.

cs.CV↗

arXiv2024

Pseudo Labelling for Enhanced Masked Autoencoders

Masked Image Modeling (MIM)-based models, such as SdAE, CAE, GreenMIM, and MixAE, have explored different strategies to enhance the performance of Masked Autoencoders (MAE) by modifying prediction, loss functions, or incorporating additional architectural components. In this paper, we propose an enhanced approach that boosts MAE performance by integrating pseudo labelling for both class and data tokens, alongside replacing the traditional pixel-level reconstruction with token-level reconstruction. This strategy uses cluster assignments as pseudo labels to promote instance-level discrimination within the network, while token reconstruction requires generation of discrete tokens encapturing local context. The targets for pseudo labelling and reconstruction needs to be generated by a teacher network. To disentangle the generation of target pseudo labels and the reconstruction of the token features, we decouple the teacher into two distinct models, where one serves as a labelling teacher and the other as a reconstruction teacher. This separation proves empirically superior to a single teacher, while having negligible impact on throughput and memory consumption. Incorporating pseudo-labelling as an auxiliary task has demonstrated notable improvements in ImageNet-1K and other downstream tasks, including classification, semantic segmentation, and detection.

cs.CV↗

arXiv2024

Investigating Self-Supervised Methods for Label-Efficient Learning

Vision transformers combined with self-supervised learning have enabled the development of models which scale across large datasets for several downstream tasks like classification, segmentation and detection. The low-shot learning capability of these models, across several low-shot downstream tasks, has been largely under explored. We perform a system level study of different self supervised pretext tasks, namely contrastive learning, clustering, and masked image modelling for their low-shot capabilities by comparing the pretrained models. In addition we also study the effects of collapse avoidance methods, namely centring, ME-MAX, sinkhorn, on these downstream tasks. Based on our detailed analysis, we introduce a framework involving both mask image modelling and clustering as pretext tasks, which performs better across all low-shot downstream tasks, including multi-class classification, multi-label classification and semantic segmentation. Furthermore, when testing the model on full scale datasets, we show performance gains in multi-class classification, multi-label classification and semantic segmentation.

cs.CV↗

arXiv2024

DailyMAE: Towards Pretraining Masked Autoencoders in One Day

Recently, masked image modeling (MIM), an important self-supervised learning (SSL) method, has drawn attention for its effectiveness in learning data representation from unlabeled data. Numerous studies underscore the advantages of MIM, highlighting how models pretrained on extensive datasets can enhance the performance of downstream tasks. However, the high computational demands of pretraining pose significant challenges, particularly within academic environments, thereby impeding the SSL research progress. In this study, we propose efficient training recipes for MIM based SSL that focuses on mitigating data loading bottlenecks and employing progressive training techniques and other tricks to closely maintain pretraining performance. Our library enables the training of a MAE-Base/16 model on the ImageNet 1K dataset for 800 epochs within just 18 hours, using a single machine equipped with 8 A100 GPUs. By achieving speed gains of up to 5.8 times, this work not only demonstrates the feasibility of conducting high-efficiency SSL training but also paves the way for broader accessibility and promotes advancement in SSL research particularly for prototyping and initial testing of SSL ideas. The code is available in https://github.com/erow/FastSSL.

cs.LG↗

arXiv2024

ASiT: Local-Global Audio Spectrogram vIsion Transformer for Event Classification

Transformers, which were originally developed for natural language processing, have recently generated significant interest in the computer vision and audio communities due to their flexibility in learning long-range relationships. Constrained by the data hungry nature of transformers and the limited amount of labelled data, most transformer-based models for audio tasks are finetuned from ImageNet pretrained models, despite the huge gap between the domain of natural images and audio. This has motivated the research in self-supervised pretraining of audio transformers, which reduces the dependency on large amounts of labeled data and focuses on extracting concise representations of audio spectrograms. In this paper, we propose \textbf{L}ocal-\textbf{G}lobal \textbf{A}udio \textbf{S}pectrogram v\textbf{I}sion \textbf{T}ransformer, namely ASiT, a novel self-supervised learning framework that captures local and global contextual information by employing group masked model learning and self-distillation. We evaluate our pretrained models on both audio and speech classification tasks, including audio event classification, keyword spotting, and speaker identification. We further conduct comprehensive ablation studies, including evaluations of different pretraining strategies. The proposed ASiT framework significantly boosts the performance on all tasks and sets a new state-of-the-art performance in five audio and speech classification tasks, outperforming recent methods, including the approaches that use additional datasets for pretraining.

cs.SD↗

arXiv2023

Beyond Accuracy: Statistical Measures and Benchmark for Evaluation of Representation from Self-Supervised Learning

Recently, self-supervised metric learning has raised attention for the potential to learn a generic distance function. It overcomes the limitations of conventional supervised one, e.g., scalability and label biases. Despite progress in this domain, current benchmarks, incorporating a narrow scope of classes, stop the nuanced evaluation of semantic representations. To bridge this gap, we introduce a large-scale benchmark with diversity and granularity of classes, Statistical Metric Learning Benchmark (SMLB) built upon ImageNet-21K and WordNet. SMLB is designed to rigorously evaluate the discriminative discernment and generalizability across more than 14M images, 20K classes, and 16K taxonomic nodes. Alongside, we propose novel evaluation metrics -- `overlap' for separability and `aSTD' for consistency -- to measure distance statistical information, which are efficient and robust to the change of class number. Our benchmark offers a novel perspective of evaluating the quality of representations beyond accuracy. Our findings reveal the limitations of supervised learning and the class bias inherent in SSL models, offering insights into potential areas for future model enhancement.

cs.CV↗

arXiv2023

LT-ViT: A Vision Transformer for multi-label Chest X-ray classification

Vision Transformers (ViTs) are widely adopted in medical imaging tasks, and some existing efforts have been directed towards vision-language training for Chest X-rays (CXRs). However, we envision that there still exists a potential for improvement in vision-only training for CXRs using ViTs, by aggregating information from multiple scales, which has been proven beneficial for non-transformer networks. Hence, we have developed LT-ViT, a transformer that utilizes combined attention between image tokens and randomly initialized auxiliary tokens that represent labels. Our experiments demonstrate that LT-ViT (1) surpasses the state-of-the-art performance using pure ViTs on two publicly available CXR datasets, (2) is generalizable to other pre-training methods and therefore is agnostic to model initialization, and (3) enables model interpretability without grad-cam and its variants.

cs.CV↗

arXiv2023

Variantional autoencoder with decremental information bottleneck for disentanglement

One major challenge of disentanglement learning with variational autoencoders is the trade-off between disentanglement and reconstruction fidelity. Previous studies, which increase the information bottleneck during training, tend to lose the constraint of disentanglement, leading to the information diffusion problem. In this paper, we present a novel framework for disentangled representation learning, DeVAE, which utilizes hierarchical latent spaces with decreasing information bottlenecks across these spaces. The key innovation of our approach lies in connecting the hierarchical latent spaces through disentanglement-invariant transformations, allowing the sharing of disentanglement properties among spaces while maintaining an acceptable level of reconstruction performance. We demonstrate the effectiveness of DeVAE in achieving a balance between disentanglement and reconstruction through a series of experiments and ablation studies on dSprites and Shapes3D datasets. Code is available at https://github.com/erow/disentanglement_lib/tree/pytorch#devae.

cs.LG↗

arXiv2023

SCD-Net: Spatiotemporal Clues Disentanglement Network for Self-supervised Skeleton-based Action Recognition

Contrastive learning has achieved great success in skeleton-based action recognition. However, most existing approaches encode the skeleton sequences as entangled spatiotemporal representations and confine the contrasts to the same level of representation. Instead, this paper introduces a novel contrastive learning framework, namely Spatiotemporal Clues Disentanglement Network (SCD-Net). Specifically, we integrate the decoupling module with a feature extractor to derive explicit clues from spatial and temporal domains respectively. As for the training of SCD-Net, with a constructed global anchor, we encourage the interaction between the anchor and extracted clues. Further, we propose a new masking strategy with structural constraints to strengthen the contextual associations, leveraging the latest development from masked image modelling into the proposed SCD-Net. We conduct extensive evaluations on the NTU-RGB+D (60&120) and PKU-MMD (I&II) datasets, covering various downstream tasks such as action recognition, action retrieval, transfer learning, and semi-supervised learning. The experimental results demonstrate the effectiveness of our method, which outperforms the existing state-of-the-art (SOTA) approaches significantly.

cs.CV↗

arXiv2023

Masked Momentum Contrastive Learning for Zero-shot Semantic Understanding

Self-supervised pretraining (SSP) has emerged as a popular technique in machine learning, enabling the extraction of meaningful feature representations without labelled data. In the realm of computer vision, pretrained vision transformers (ViTs) have played a pivotal role in advancing transfer learning. Nonetheless, the escalating cost of finetuning these large models has posed a challenge due to the explosion of model size. This study endeavours to evaluate the effectiveness of pure self-supervised learning (SSL) techniques in computer vision tasks, obviating the need for finetuning, with the intention of emulating human-like capabilities in generalisation and recognition of unseen objects. To this end, we propose an evaluation protocol for zero-shot segmentation based on a prompting patch. Given a point on the target object as a prompt, the algorithm calculates the similarity map between the selected patch and other patches, upon that, a simple thresholding is applied to segment the target. Another evaluation is intra-object and inter-object similarity to gauge discriminatory ability of SSP ViTs. Insights from zero-shot segmentation from prompting and discriminatory abilities of SSP led to the design of a simple SSP approach, termed MMC. This approaches combines Masked image modelling for encouraging similarity of local features, Momentum based self-distillation for transferring semantics from global to local features, and global Contrast for promoting semantics of global features, to enhance discriminative representations of SSP ViTs. Consequently, our proposed method significantly reduces the overlap of intra-object and inter-object similarities, thereby facilitating effective object segmentation within an image. Our experiments reveal that MMC delivers top-tier results in zero-shot semantic segmentation across various datasets.

cs.CV↗

arXiv2023

SPCXR: Self-supervised Pretraining using Chest X-rays Towards a Domain Specific Foundation Model

Chest X-rays (CXRs) are a widely used imaging modality for the diagnosis and prognosis of lung disease. The image analysis tasks vary. Examples include pathology detection and lung segmentation. There is a large body of work where machine learning algorithms are developed for specific tasks. A significant recent example is Coronavirus disease (covid-19) detection using CXR data. However, the traditional diagnostic tool design methods based on supervised learning are burdened by the need to provide training data annotation, which should be of good quality for better clinical outcomes. Here, we propose an alternative solution, a new self-supervised paradigm, where a general representation from CXRs is learned using a group-masked self-supervised framework. The pre-trained model is then fine-tuned for domain-specific tasks such as covid-19, pneumonia detection, and general health screening. We show that the same pre-training can be used for the lung segmentation task. Our proposed paradigm shows robust performance in multiple downstream tasks which demonstrates the success of the pre-training. Moreover, the performance of the pre-trained models on data with significant drift during test time proves the learning of a better generic representation. The methods are further validated by covid-19 detection in a unique small-scale pediatric data set. The performance gain in accuracy (~25%) is significant when compared to a supervised transformer-based method. This adds credence to the strength and reliability of our proposed framework and pre-training strategy.

eess.IV↗

arXiv2022

SiT: Self-supervised vIsion Transformer

Self-supervised learning methods are gaining increasing traction in computer vision due to their recent success in reducing the gap with supervised learning. In natural language processing (NLP) self-supervised learning and transformers are already the methods of choice. The recent literature suggests that the transformers are becoming increasingly popular also in computer vision. So far, the vision transformers have been shown to work well when pretrained either using a large scale supervised data or with some kind of co-supervision, e.g. in terms of teacher network. These supervised pretrained vision transformers achieve very good results in downstream tasks with minimal changes. In this work we investigate the merits of self-supervised learning for pretraining image/vision transformers and then using them for downstream classification tasks. We propose Self-supervised vIsion Transformers (SiT) and discuss several self-supervised training mechanisms to obtain a pretext model. The architectural flexibility of SiT allows us to use it as an autoencoder and work with multiple self-supervised tasks seamlessly. We show that a pretrained SiT can be finetuned for a downstream classification task on small scale datasets, consisting of a few thousand images rather than several millions. The proposed approach is evaluated on standard datasets using common protocols. The results demonstrate the strength of the transformers and their suitability for self-supervised learning. We outperformed existing self-supervised learning methods by large margin. We also observed that SiT is good for few shot learning and also showed that it is learning useful representation by simply training a linear classifier on top of the learned features from SiT. Pretraining, finetuning, and evaluation codes will be available under: https://github.com/Sara-Ahmed/SiT.

cs.CV↗

arXiv2022

SB-SSL: Slice-Based Self-Supervised Transformers for Knee Abnormality Classification from MRI

The availability of large scale data with high quality ground truth labels is a challenge when developing supervised machine learning solutions for healthcare domain. Although, the amount of digital data in clinical workflows is increasing, most of this data is distributed on clinical sites and protected to ensure patient privacy. Radiological readings and dealing with large-scale clinical data puts a significant burden on the available resources, and this is where machine learning and artificial intelligence play a pivotal role. Magnetic Resonance Imaging (MRI) for musculoskeletal (MSK) diagnosis is one example where the scans have a wealth of information, but require a significant amount of time for reading and labeling. Self-supervised learning (SSL) can be a solution for handling the lack of availability of ground truth labels, but generally requires a large amount of training data during the pretraining stage. Herein, we propose a slice-based self-supervised deep learning framework (SB-SSL), a novel slice-based paradigm for classifying abnormality using knee MRI scans. We show that for a limited number of cases (<1000), our proposed framework is capable to identify anterior cruciate ligament tear with an accuracy of 89.17% and an AUC of 0.954, outperforming state-of-the-art without usage of external data during pretraining. This demonstrates that our proposed framework is suited for SSL in the limited data regime.

eess.IV↗