arXiv subjects

Sara Beery

Publications and source records attributed to Sara Beery.

At least 55 records · Page 3Linked to original sources

arXiv2023

Reflections from the Workshop on AI-Assisted Decision Making for Conservation

In this white paper, we synthesize key points made during presentations and discussions from the AI-Assisted Decision Making for Conservation workshop, hosted by the Center for Research on Computation and Society at Harvard University on October 20-21, 2022. We identify key open research questions in resource allocation, planning, and interventions for biodiversity conservation, highlighting conservation challenges that not only require AI solutions, but also require novel methodological advances. In addition to providing a summary of the workshop talks and discussions, we hope this document serves as a call-to-action to orient the expansion of algorithmic decision-making approaches to prioritize real-world conservation challenges, through collaborative efforts of ecologists, conservation decision-makers, and AI researchers.

cs.AI↗

arXiv2023

MammalNet: A Large-scale Video Benchmark for Mammal Recognition and Behavior Understanding

Monitoring animal behavior can facilitate conservation efforts by providing key insights into wildlife health, population status, and ecosystem function. Automatic recognition of animals and their behaviors is critical for capitalizing on the large unlabeled datasets generated by modern video devices and for accelerating monitoring efforts at scale. However, the development of automated recognition systems is currently hindered by a lack of appropriately labeled datasets. Existing video datasets 1) do not classify animals according to established biological taxonomies; 2) are too small to facilitate large-scale behavioral studies and are often limited to a single species; and 3) do not feature temporally localized annotations and therefore do not facilitate localization of targeted behaviors within longer video sequences. Thus, we propose MammalNet, a new large-scale animal behavior dataset with taxonomy-guided annotations of mammals and their common behaviors. MammalNet contains over 18K videos totaling 539 hours, which is ~10 times larger than the largest existing animal behavior dataset. It covers 17 orders, 69 families, and 173 mammal categories for animal categorization and captures 12 high-level animal behaviors that received focus in previous animal behavior studies. We establish three benchmarks on MammalNet: standard animal and behavior recognition, compositional low-shot animal and behavior recognition, and behavior detection. Our dataset and code have been made available at: https://mammal-net.github.io.

cs.CV↗

arXiv2023

Vision Models Can Be Efficiently Specialized via Few-Shot Task-Aware Compression

Recent vision architectures and self-supervised training methods enable vision models that are extremely accurate and general, but come with massive parameter and computational costs. In practical settings, such as camera traps, users have limited resources, and may fine-tune a pretrained model on (often limited) data from a small set of specific categories of interest. These users may wish to make use of modern, highly-accurate models, but are often computationally constrained. To address this, we ask: can we quickly compress large generalist models into accurate and efficient specialists? For this, we propose a simple and versatile technique called Few-Shot Task-Aware Compression (TACO). Given a large vision model that is pretrained to be accurate on a broad task, such as classification over ImageNet-22K, TACO produces a smaller model that is accurate on specialized tasks, such as classification across vehicle types or animal species. Crucially, TACO works in few-shot fashion, i.e. only a few task-specific samples are used, and the procedure has low computational overheads. We validate TACO on highly-accurate ResNet, ViT/DeiT, and ConvNeXt models, originally trained on ImageNet, LAION, or iNaturalist, which we specialize and compress to a diverse set of "downstream" subtasks. TACO can reduce the number of non-zero parameters in existing models by up to 20x relative to the original models, leading to inference speedups of up to 3$\times$, while remaining accuracy-competitive with the uncompressed models on the specialized tasks.

cs.CV↗

arXiv2023

Teaching Computer Vision for Ecology

Computer vision can accelerate ecology research by automating the analysis of raw imagery from sensors like camera traps, drones, and satellites. However, computer vision is an emerging discipline that is rarely taught to ecologists. This work discusses our experience teaching a diverse group of ecologists to prototype and evaluate computer vision systems in the context of an intensive hands-on summer workshop. We explain the workshop structure, discuss common challenges, and propose best practices. This document is intended for computer scientists who teach computer vision across disciplines, but it may also be useful to ecologists or other domain experts who are learning to use computer vision themselves.

cs.CY↗

arXiv2022

The Caltech Fish Counting Dataset: A Benchmark for Multiple-Object Tracking and Counting

We present the Caltech Fish Counting Dataset (CFC), a large-scale dataset for detecting, tracking, and counting fish in sonar videos. We identify sonar videos as a rich source of data for advancing low signal-to-noise computer vision applications and tackling domain generalization in multiple-object tracking (MOT) and counting. In comparison to existing MOT and counting datasets, which are largely restricted to videos of people and vehicles in cities, CFC is sourced from a natural-world domain where targets are not easily resolvable and appearance features cannot be easily leveraged for target re-identification. With over half a million annotations in over 1,500 videos sourced from seven different sonar cameras, CFC allows researchers to train MOT and counting algorithms and evaluate generalization performance at unseen test locations. We perform extensive baseline experiments and identify key challenges and opportunities for advancing the state of the art in generalization in MOT and counting.

cs.CV↗

arXiv2022

Extending the WILDS Benchmark for Unsupervised Adaptation

Machine learning systems deployed in the wild are often trained on a source distribution but deployed on a different target distribution. Unlabeled data can be a powerful point of leverage for mitigating these distribution shifts, as it is frequently much more available than labeled data and can often be obtained from distributions beyond the source distribution as well. However, existing distribution shift benchmarks with unlabeled data do not reflect the breadth of scenarios that arise in real-world applications. In this work, we present the WILDS 2.0 update, which extends 8 of the 10 datasets in the WILDS benchmark of distribution shifts to include curated unlabeled data that would be realistically obtainable in deployment. These datasets span a wide range of applications (from histology to wildlife conservation), tasks (classification, regression, and detection), and modalities (photos, satellite images, microscope slides, text, molecular graphs). The update maintains consistency with the original WILDS benchmark by using identical labeled training, validation, and test sets, as well as the evaluation metrics. On these datasets, we systematically benchmark state-of-the-art methods that leverage unlabeled data, including domain-invariant, self-training, and self-supervised methods, and show that their success on WILDS is limited. To facilitate method development and evaluation, we provide an open-source package that automates data loading and contains all of the model architectures and methods used in this paper. Code and leaderboards are available at https://wilds.stanford.edu.

cs.LG↗

arXiv2021

Seeing biodiversity: perspectives in machine learning for wildlife conservation

Data acquisition in animal ecology is rapidly accelerating due to inexpensive and accessible sensors such as smartphones, drones, satellites, audio recorders and bio-logging devices. These new technologies and the data they generate hold great potential for large-scale environmental monitoring and understanding, but are limited by current data processing approaches which are inefficient in how they ingest, digest, and distill data into relevant information. We argue that machine learning, and especially deep learning approaches, can meet this analytic challenge to enhance our understanding, monitoring capacity, and conservation of wildlife species. Incorporating machine learning into ecological workflows could improve inputs for population and behavior models and eventually lead to integrated hybrid modeling tools, with ecological models acting as constraints for machine learning models and the latter providing data-supported insights. In essence, by combining new machine learning approaches with ecological domain knowledge, animal ecologists can capitalize on the abundance of data generated by modern sensor technologies in order to reliably estimate population abundances, study animal behavior and mitigate human/wildlife conflicts. To succeed, this approach will require close collaboration and cross-disciplinary education between the computer science and animal ecology communities in order to ensure the quality of machine learning approaches and train a new generation of data scientists in ecology and conservation.

cs.LG↗

arXiv2021

Domain Adaptation for Rare Classes Augmented with Synthetic Samples

To alleviate lower classification performance on rare classes in imbalanced datasets, a possible solution is to augment the underrepresented classes with synthetic samples. Domain adaptation can be incorporated in a classifier to decrease the domain discrepancy between real and synthetic samples. While domain adaptation is generally applied on completely synthetic source domains and real target domains, we explore how domain adaptation can be applied when only a single rare class is augmented with simulated samples. As a testbed, we use a camera trap animal dataset with a rare deer class, which is augmented with synthetic deer samples. We adapt existing domain adaptation methods to two new methods for the single rare class setting: DeerDANN, based on the Domain-Adversarial Neural Network (DANN), and DeerCORAL, based on deep correlation alignment (Deep CORAL) architectures. Experiments show that DeerDANN has the highest improvement in deer classification accuracy of 24.0% versus 22.4% improvement of DeerCORAL when compared to the baseline. Further, both methods require fewer than 10k synthetic samples, as used by the baseline, to achieve these higher accuracies. DeerCORAL requires the least number of synthetic samples (2k deer), followed by DeerDANN (8k deer).

cs.CV↗

arXiv2021

WILDS: A Benchmark of in-the-Wild Distribution Shifts

Distribution shifts -- where the training distribution differs from the test distribution -- can substantially degrade the accuracy of machine learning (ML) systems deployed in the wild. Despite their ubiquity in the real-world deployments, these distribution shifts are under-represented in the datasets widely used in the ML community today. To address this gap, we present WILDS, a curated benchmark of 10 datasets reflecting a diverse range of distribution shifts that naturally arise in real-world applications, such as shifts across hospitals for tumor identification; across camera traps for wildlife monitoring; and across time and location in satellite imaging and poverty mapping. On each dataset, we show that standard training yields substantially lower out-of-distribution than in-distribution performance. This gap remains even with models trained by existing methods for tackling distribution shifts, underscoring the need for new methods for training models that are more robust to the types of distribution shifts that arise in practice. To facilitate method development, we provide an open-source package that automates dataset loading, contains default model architectures and hyperparameters, and standardizes evaluations. Code and leaderboards are available at https://wilds.stanford.edu.

cs.LG↗

arXiv2021

Species Distribution Modeling for Machine Learning Practitioners: A Review

Conservation science depends on an accurate understanding of what's happening in a given ecosystem. How many species live there? What is the makeup of the population? How is that changing over time? Species Distribution Modeling (SDM) seeks to predict the spatial (and sometimes temporal) patterns of species occurrence, i.e. where a species is likely to be found. The last few years have seen a surge of interest in applying powerful machine learning tools to challenging problems in ecology. Despite its considerable importance, SDM has received relatively little attention from the computer science community. Our goal in this work is to provide computer scientists with the necessary background to read the SDM literature and develop ecologically useful ML-based SDM algorithms. In particular, we introduce key SDM concepts and terminology, review standard models, discuss data availability, and highlight technical challenges and pitfalls.

cs.LG↗

arXiv2021

ElephantBook: A Semi-Automated Human-in-the-Loop System for Elephant Re-Identification

African elephants are vital to their ecosystems, but their populations are threatened by a rise in human-elephant conflict and poaching. Monitoring population dynamics is essential in conservation efforts; however, tracking elephants is a difficult task, usually relying on the invasive and sometimes dangerous placement of GPS collars. Although there have been many recent successes in the use of computer vision techniques for automated identification of other species, identification of elephants is extremely difficult and typically requires expertise as well as familiarity with elephants in the population. We have built and deployed a web-based platform and database for human-in-the-loop re-identification of elephants combining manual attribute labeling and state-of-the-art computer vision algorithms, known as ElephantBook. Our system is currently in use at the Mara Elephant Project, helping monitor the protected and at-risk population of elephants in the Greater Maasai Mara ecosystem. ElephantBook makes elephant re-identification usable by non-experts and scalable for use by multiple conservation NGOs.

cs.LG↗

arXiv2021

Image-to-Image Translation of Synthetic Samples for Rare Classes

The natural world is long-tailed: rare classes are observed orders of magnitudes less frequently than common ones, leading to highly-imbalanced data where rare classes can have only handfuls of examples. Learning from few examples is a known challenge for deep learning based classification algorithms, and is the focus of the field of low-shot learning. One potential approach to increase the training data for these rare classes is to augment the limited real data with synthetic samples. This has been shown to help, but the domain shift between real and synthetic hinders the approaches' efficacy when tested on real data. We explore the use of image-to-image translation methods to close the domain gap between synthetic and real imagery for animal species classification in data collected from camera traps: motion-activated static cameras used to monitor wildlife. We use low-level feature alignment between source and target domains to make synthetic data for a rare species generated using a graphics engine more "realistic". Compared against a system augmented with unaligned synthetic data, our experiments show a considerable decrease in classification error rates on a rare species.

cs.CV↗

arXiv2021

Can poachers find animals from public camera trap images?

To protect the location of camera trap data containing sensitive, high-target species, many ecologists randomly obfuscate the latitude and longitude of the camera when publishing their data. For example, they may publish a random location within a 1km radius of the true camera location for each camera in their network. In this paper, we investigate the robustness of geo-obfuscation for maintaining camera trap location privacy, and show via a case study that a few simple, intuitive heuristics and publicly available satellite rasters can be used to reduce the area likely to contain the camera by 87% (assuming random obfuscation within 1km), demonstrating that geo-obfuscation may be less effective than previously believed.

cs.CV↗

arXiv2021

Benchmarking Representation Learning for Natural World Image Collections

Recent progress in self-supervised learning has resulted in models that are capable of extracting rich representations from image collections without requiring any explicit label supervision. However, to date the vast majority of these approaches have restricted themselves to training on standard benchmark datasets such as ImageNet. We argue that fine-grained visual categorization problems, such as plant and animal species classification, provide an informative testbed for self-supervised learning. In order to facilitate progress in this area we present two new natural world visual classification datasets, iNat2021 and NeWT. The former consists of 2.7M images from 10k different species uploaded by users of the citizen science application iNaturalist. We designed the latter, NeWT, in collaboration with domain experts with the aim of benchmarking the performance of representation learning algorithms on a suite of challenging natural world binary classification tasks that go beyond standard species classification. These two new datasets allow us to explore questions related to large-scale representation and transfer learning in the context of fine-grained categories. We provide a comprehensive analysis of feature extractors trained with and without supervision on ImageNet and iNat2021, shedding light on the strengths and weaknesses of different learned features across a diverse set of tasks. We find that features produced by standard supervised methods still outperform those produced by self-supervised approaches such as SimCLR. However, improved self-supervised learning methods are constantly being released and the iNat2021 and NeWT datasets are a valuable resource for tracking their progress.

cs.CV↗

arXiv2021

The iWildCam 2021 Competition Dataset

Camera traps enable the automatic collection of large quantities of image data. Ecologists use camera traps to monitor animal populations all over the world. In order to estimate the abundance of a species from camera trap data, ecologists need to know not just which species were seen, but also how many individuals of each species were seen. Object detection techniques can be used to find the number of individuals in each image. However, since camera traps collect images in motion-triggered bursts, simply adding up the number of detections over all frames is likely to lead to an incorrect estimate. Overcoming these obstacles may require incorporating spatio-temporal reasoning or individual re-identification in addition to traditional species detection and classification. We have prepared a challenge where the training data and test data are from different cameras spread across the globe. The set of species seen in each camera overlap, but are not identical. The challenge is to classify species and count individual animals across sequences in the test cameras.

cs.CV↗

arXiv2020

Context R-CNN: Long Term Temporal Context for Per-Camera Object Detection

In static monitoring cameras, useful contextual information can stretch far beyond the few seconds typical video understanding models might see: subjects may exhibit similar behavior over multiple days, and background objects remain static. Due to power and storage constraints, sampling frequencies are low, often no faster than one frame per second, and sometimes are irregular due to the use of a motion trigger. In order to perform well in this setting, models must be robust to irregular sampling rates. In this paper we propose a method that leverages temporal context from the unlabeled frames of a novel camera to improve performance at that camera. Specifically, we propose an attention-based approach that allows our model, Context R-CNN, to index into a long term memory bank constructed on a per-camera basis and aggregate contextual features from other frames to boost object detection performance on the current frame. We apply Context R-CNN to two settings: (1) species detection using camera traps, and (2) vehicle detection in traffic cameras, showing in both settings that Context R-CNN leads to performance gains over strong baselines. Moreover, we show that increasing the contextual time horizon leads to improved results. When applied to camera trap data from the Snapshot Serengeti dataset, Context R-CNN with context from up to a month of images outperforms a single-frame baseline by 17.9% mAP, and outperforms S3D (a 3d convolution based baseline) by 11.2% mAP.

cs.CV↗

arXiv2020

The iWildCam 2020 Competition Dataset

Camera traps enable the automatic collection of large quantities of image data. Biologists all over the world use camera traps to monitor animal populations. We have recently been making strides towards automatic species classification in camera trap images. However, as we try to expand the geographic scope of these models we are faced with an interesting question: how do we train models that perform well on new (unseen during training) camera trap locations? Can we leverage data from other modalities, such as citizen science data and remote sensing data? In order to tackle this problem, we have prepared a challenge where the training data and test data are from different cameras spread across the globe. For each camera, we provide a series of remote sensing imagery that is tied to the location of the camera. We also provide citizen science imagery from the set of species seen in our data. The challenge is to correctly classify species in the test camera traps.

cs.CV↗

arXiv2019

A deep active learning system for species identification and counting in camera trap images

Biodiversity conservation depends on accurate, up-to-date information about wildlife population distributions. Motion-activated cameras, also known as camera traps, are a critical tool for population surveys, as they are cheap and non-intrusive. However, extracting useful information from camera trap images is a cumbersome process: a typical camera trap survey may produce millions of images that require slow, expensive manual review. Consequently, critical information is often lost due to resource limitations, and critical conservation questions may be answered too slowly to support decision-making. Computer vision is poised to dramatically increase efficiency in image-based biodiversity surveys, and recent studies have harnessed deep learning techniques for automatic information extraction from camera trap images. However, the accuracy of results depends on the amount, quality, and diversity of the data available to train models, and the literature has focused on projects with millions of relevant, labeled training images. Many camera trap projects do not have a large set of labeled images and hence cannot benefit from existing machine learning techniques. Furthermore, even projects that do have labeled data from similar ecosystems have struggled to adopt deep learning methods because image classification models overfit to specific image backgrounds (i.e., camera locations). In this paper, we focus not on automating the labeling of camera trap images, but on accelerating this process. We combine the power of machine intelligence and human intelligence to build a scalable, fast, and accurate active learning system to minimize the manual work required to identify and count animals in camera trap images. Our proposed scheme can match the state of the art accuracy on a 3.2 million image dataset with as few as 14,100 manual labels, which means decreasing manual labeling effort by over 99.5%.

cs.LG↗