arXiv subjects

Scott Shenker

Publications and source records attributed to Scott Shenker.

40 records · Page 3Linked to original sources

arXiv2012

Shark: SQL and Rich Analytics at Scale

Shark is a new data analysis system that marries query processing with complex analytics on large clusters. It leverages a novel distributed memory abstraction to provide a unified engine that can run SQL queries and sophisticated analytics functions (e.g., iterative machine learning) at scale, and efficiently recovers from failures mid-query. This allows Shark to run SQL queries up to 100x faster than Apache Hive, and machine learning programs up to 100x faster than Hadoop. Unlike previous systems, Shark shows that it is possible to achieve these speedups while retaining a MapReduce-like execution engine, and the fine-grained fault tolerance properties that such engines provide. It extends such an engine in several ways, including column-oriented in-memory storage and dynamic mid-query replanning, to effectively execute SQL. The result is a system that matches the speedups reported for MPP analytic databases over MapReduce, while offering fault tolerance properties and complex analytics capabilities that they lack.

cs.DB↗

arXiv2012

On the Resilience of Routing Tables

Many modern network designs incorporate "failover" paths into routers' forwarding tables. We initiate the theoretical study of the conditions under which such resilient routing tables can guarantee delivery of packets.

cs.DC↗

arXiv2012

Slick Packets

Source-controlled routing has been proposed as a way to improve flexibility of future network architectures, as well as simplifying the data plane. However, if a packet specifies its path, this precludes fast local re-routing within the network. We propose SlickPackets, a novel solution that allows packets to slip around failures by specifying alternate paths in their headers, in the form of compactly-encoded directed acyclic graphs. We show that this can be accomplished with reasonably small packet headers for real network topologies, and results in responsiveness to failures that is competitive with past approaches that require much more state within the network. Our approach thus enables fast failure response while preserving the benefits of source-controlled routing.

cs.NI↗

arXiv2011

Faster and More Accurate Sequence Alignment with SNAP

We present the Scalable Nucleotide Alignment Program (SNAP), a new short and long read aligner that is both more accurate (i.e., aligns more reads with fewer errors) and 10-100x faster than state-of-the-art tools such as BWA. Unlike recent aligners based on the Burrows-Wheeler transform, SNAP uses a simple hash index of short seed sequences from the genome, similar to BLAST's. However, SNAP greatly reduces the number and cost of local alignment checks performed through several measures: it uses longer seeds to reduce the false positive locations considered, leverages larger memory capacities to speed index lookup, and excludes most candidate locations without fully computing their edit distance to the read. The result is an algorithm that scales well for reads from one hundred to thousands of bases long and provides a rich error model that can match classes of mutations (e.g., longer indels) that today's fast aligners ignore. We calculate that SNAP can align a dataset with 30x coverage of a human genome in less than an hour for a cost of $2 on Amazon EC2, with higher accuracy than BWA. Finally, we describe ongoing work to further improve SNAP.

cs.DS↗