arXiv subjects

Sean Escola

Publications and source records attributed to Sean Escola.

6 recordsLinked to original sources

arXiv2026

Compiling molecular ultrastructure into neural dynamics

High-resolution brain imaging can now capture not just synapse locations but their molecular composition, with the cost of such mapping falling exponentially. Yet such ultrastructural data has so far told us little about local neuronal physiology - specifically, the parameters (e.g., synaptic efficacies, local conductances) that govern neural dynamics. We propose to translate molecularly annotated ultrastructure into physiology, introducing the concept of an ultrastructure-to-dynamics compiler: a learned mapping from molecularly annotated ultrastructure to simulator-ready, uncertainty-aware physiological parameters. The requirement is paired training data, with jointly acquired ultrastructure from imaging, and dynamical responses to perturbations from physiological experiments. With this data we can train models that predict local physiology directly from structure. Such a compiler would support biophysical simulations by turning anatomical maps into models of circuit dynamics, shifting structure-to-function from a descriptive program to a predictive one and opening routes to understanding neural computation and forecasting intervention effects.

q-bio.NC↗

arXiv2026

Cognitive Dark Matter: Measuring What AI Misses

We propose that the jagged intelligence landscape of modern AI systems arises from a missing training signal that we call ``cognitive dark matter'' (CDM): brain functions that meaningfully shape behavior yet are hard to infer from behavior alone. We identify key CDM domains---metacognition, cognitive flexibility, lifelong learning, abductive reasoning, social and common-sense reasoning, and emotional intelligence---and present evidence CDM-loaded functions are largely unmeasured in current AI benchmarks, and that large-scale neuroscience training datasets which could be used to instill these capabilities do not yet exist. We then outline a research program centered on three complementary data types designed to surface CDM for model training: (i) latent variables from large-scale cognitive models, (ii) process-tracing data such as eye-tracking and think-aloud protocols, and (iii) paired neural--behavioral data. These data will enable AI training on cognitive process rather than behavioral outcome alone, producing models with more general, less jagged intelligence. As a dual benefit, the same data will advance our understanding of human intelligence itself.

q-bio.NC↗

arXiv2026

Cognitive Models and AI Algorithms Provide Templates for Designing Language Agents

While contemporary large language models (LLMs) are increasingly capable in isolation, there are still many difficult problems that lie beyond the abilities of a single LLM. For such tasks, there is still uncertainty about how best to take many LLMs as parts and combine them into a greater whole. This position paper argues that potential blueprints for designing such modular language agents can be found in the existing literature on cognitive models and artificial intelligence (AI) algorithms. To make this point clear, we formalize the idea of an agent template that specifies roles for individual LLMs and how their functionalities should be composed. We then survey a variety of existing language agents in the literature and highlight their underlying templates derived directly from cognitive models or AI algorithms. By highlighting these designs, we aim to call attention to agent templates inspired by cognitive science and AI as a powerful tool for developing effective, interpretable language agents.

cs.AI↗

arXiv2025

Using Large Language Models to Measure Symptom Severity in Patients At Risk for Schizophrenia

Patients who are at clinical high risk (CHR) for schizophrenia need close monitoring of their symptoms to inform appropriate treatments. The Brief Psychiatric Rating Scale (BPRS) is a validated, commonly used research tool for measuring symptoms in patients with schizophrenia and other psychotic disorders; however, it is not commonly used in clinical practice as it requires a lengthy structured interview. Here, we utilize large language models (LLMs) to predict BPRS scores from clinical interview transcripts in 409 CHR patients from the Accelerating Medicines Partnership Schizophrenia (AMP-SCZ) cohort. Despite the interviews not being specifically structured to measure the BPRS, the zero-shot performance of the LLM predictions compared to the true assessment (median concordance: 0.84, ICC: 0.73) approaches human inter- and intra-rater reliability. We further demonstrate that LLMs have substantial potential to improve and standardize the assessment of CHR patients via their accuracy in assessing the BPRS in foreign languages (median concordance: 0.88, ICC: 0.70), and integrating longitudinal information in a one-shot or few-shot learning approach.

cs.CL↗

arXiv2023

Toward Next-Generation Artificial Intelligence: Catalyzing the NeuroAI Revolution

Neuroscience has long been an essential driver of progress in artificial intelligence (AI). We propose that to accelerate progress in AI, we must invest in fundamental research in NeuroAI. A core component of this is the embodied Turing test, which challenges AI animal models to interact with the sensorimotor world at skill levels akin to their living counterparts. The embodied Turing test shifts the focus from those capabilities like game playing and language that are especially well-developed or uniquely human to those capabilities, inherited from over 500 million years of evolution, that are shared with all animals. Building models that can pass the embodied Turing test will provide a roadmap for the next generation of AI.

cs.AI↗

arXiv2020

Neuromatch Academy: Teaching Computational Neuroscience with global accessibility

Neuromatch Academy designed and ran a fully online 3-week Computational Neuroscience summer school for 1757 students with 191 teaching assistants working in virtual inverted (or flipped) classrooms and on small group projects. Fourteen languages, active community management, and low cost allowed for an unprecedented level of inclusivity and universal accessibility.

q-bio.OT↗