SearcharxivSearch

arXiv subjects

Sean M. Murray

Publications and source records attributed to Sean M. Murray.

2 recordsLinked to original sources

Pattern selection in reaction diffusion systems

Turing's theory of pattern formation has been used to describe the formation of self-organised periodic patterns in many biological, chemical and physical systems. However, the use of such models is hindered by our inability to predict, in general, which pattern is obtained from a given set of model parameters. While much is known near the onset of the spatial instability, the mechanisms underlying pattern selection and dynamics away from onset are much less understood. Here, we provide new physical insight into the dynamics of these systems. We find that peaks in a Turing pattern behave as point sinks, the dynamics of which are determined by the diffusive fluxes into them. As a result, peaks move towards a periodic steady-state configuration that minimizes the mass of the diffusive species. We also show that the preferred number of peaks at the final steady-state is such that this mass is minimised. Our work presents mass minimization as a simple, generalisable, physical principle for understanding pattern formation in reaction diffusion systems far from onset.

nlin.PS

Centre-finding in E. coli and the role of mathematical modelling: past, present and future

We review the key role played by mathematical modelling in elucidating two centre-finding patterning systems in E. coli: midcell division positioning by the MinCDE system and DNA partitioning by the ParABS system. We focus particularly on how, despite much experimental effort, these systems were simply too complex to unravel by experiments alone, and instead required key injections of quantitative, mathematical thinking. We conclude the review by analysing the frequency of modelling approaches in microbiology over time. We find that while such methods are increasing in popularity, they are still probably heavily under-utilised for optimal progress on complex biological questions.

q-bio.SC