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Sebastian Bouzat

Publications and source records attributed to Sebastian Bouzat.

9 recordsLinked to original sources

Modeling Epidemics on Multiplex Networks: Epidemic Threshold and Basic Reproduction Number

Accurate epidemic forecasting requires models that account for the layered and heterogeneous nature of real social interactions. The basic reproduction number $\mathcal R_0$, as calculated from models that assume homogeneous mixing or single-layer contact structures, has limited applicability to complex social systems. Here, we derive an expression for $\mathcal R_0$ in the context of multiplex networks, enabling the analysis of disease transmission across multiple social layers. We adapt the Degree-Based Mean-Field (DBMF) SIR model for single-layer complex networks to the multiplex setting, where each layer is characterized by its own degree distribution and infection rate. Using the Next Generation Matrix method, we derive an analytical expression for the basic reproduction number $\mathcal R_0$. Numerical integration of the multiplex DBMF equations shows that $\mathcal R_0=1$ marks the epidemic threshold and governs the behavior of key outbreak indicators as expected. In addition to the exact expression for $\mathcal R_0$, we introduce an approximation, denoted by $\tau$, which is simpler to compute and admits a more transparent interpretation in terms of the epidemiological and topological parameters of the system. Stochastic agent-based simulations support these findings, demonstrating a direct correspondence between $\tau$ and the average number of secondary infections generated during the early stages of an outbreak, consistent with the epidemiological interpretation of $\mathcal R_0$. This work provides a robust generalization of $\mathcal R_0$ for layered contact structures, offering a more realistic basis for epidemic forecasting and the design of intervention strategies.

physics.soc-ph

The importance of the incubation time distribution in compartmental epidemiological models

This study investigates the utilization of various mathematical models for comprehending and managing outbreaks of infectious diseases, with a specific focus on how different distributions of incubation times influence predictions regarding epidemics. Two methodologies are examined: a compartmental SEnIR ODE model, which represents an enhanced version of the mean-field SEIR model, and a stochastic agent-based complex network model. Our findings demonstrate that the selection of diverse incubation time distributions can result in noteworthy discrepancies in critical epidemic forecasts, highlighting the crucial role of precise modeling in shaping effective public health interventions. The research underscores the necessity of integrating authentic distribution patterns into epidemic modeling to increase its reliability and applicability

nlin.AO

Testing lockdown measures in epidemic outbreaks through mean-field models considering the social structure

Lately, concepts such as lockdown, quarantine, and social distancing have become very relevant since they have been associated with essential measures in the prevention and mitigation of COVID-19. While some conclusions about the effectiveness of these measures could be drawn from field observations, many mathematical models aimed to provide some clues. However, the reliability of these models is questioned, especially if the social structure is not included in them. In this work, we propose a mesoscopic model that allows the evaluation of the effect of measures such as social distancing and lockdown when the social topology is taken into account. The model is able to predict successive waves of infections without the need to account for reinfections, and it can qualitatively reproduce the wave patterns observed across many countries during the COVID-19 pandemic. Subsequent waves can have a higher peak of infections if the restrictiveness of the lockdown is above a certain threshold. The model is flexible and can implement various social distancing strategies by adjusting the restrictiveness and the duration of lockdown measures or specifying whether they occur once or repeatedly. It also includes the option to consider essential workers that do not isolate during a lockdown.

physics.soc-ph

Localization of soft modes at the depinning transition

We characterize the soft modes of the dynamical matrix at the depinning transition, and compare it with the properties of the Anderson model (and long--range generalizations). The density of states at the edge of the spectrum displays a universal linear tail, different from the Lifshitz tails. The eigenvectors are instead very similar in the two matrix ensembles. We focus on the ground state (soft mode), which represents the epicenter of avalanche instabilities. We expect it to be localized in all finite dimensions, and make a clear connection between its localization length and the Larkin length of the depinning model. In the fully connected model, the weak--strong pinning transition coincides with a peculiar localization transition of the ground state.

cond-mat.dis-nn

Tug-of-war of molecular motors: the effects of uneven load sharing

We analyze theoretically the problem of cargo transport along microtubules by motors of two species with opposite polarities. We consider two different one-dimensional models previously developed in the literature. On the one hand, a quite widespread model which assumes equal force sharing, here referred to as mean field model (MFM). On the other hand, a stochastic model (SM) which considers individual motor-cargo links. We find that in generic situations the MFM predicts larger cargo mean velocity, smaller mean run time and less frequent reversions than the SM. These phenomena are found to be consequences of the load sharing assumptions and can be interpreted in terms the probabilities of the different motility states. We also explore the influence of the viscosity in both models and the role of the stiffness of the motor-cargo links within the SM. Our results show that the mean cargo velocity is independent of the stiffness while the mean run time decreases with such a parameter. We explore the case of symmetric forward and backward motors considering kinesin- 1 parameters, and the problem of transport by kinesin-1 and cytoplasmic dyneins considering two different sets of parameters previously proposed for dyneins.

physics.bio-ph

Influence of direct motor-motor interaction in models for cargo transport by a single team of motors

We analyze theoretically the effects of excluded-volume interactions between motors on the dynamics of a cargo driven by multiple motors. The model considered shares many commons with other recently proposed in the literature, with the addition of direct interaction between motors and motor back steps. The cargo is assumed to follow a continuum Langevin dynamics, while individual motors evolve following a Monte Carlo algorithm based on experimentally accessible probabilities for discrete forward and backward jumps, and attachment and detachment rates. The links between cargo and motors are considered as non linear springs. By means of numerical simulations we compute the relevant quantities characterizing the dynamical properties of the system, and we compare the results to those for non interacting motors. We find that interactions lead to quite relevant changes in the force-velocity relation for cargo, with a considerable reduction of the stall force, and cause also a notable decrease of the run length. These effects are mainly due to traffic-like phenomena in the microtubule. The consideration of several parallel tracks for motors reduces such effects. However, we find that for realistic values of the number of motors and the number of tracks, the influence of interactions on the global parameters of transport of cargo are far from being negligible. Our studies provide also an analysis of the relevance of motor back steps on the modeling, and of the influence of different assumptions for the detachment rates. In particular, we discuss these two aspects in connection with the possibility of observing processive back motion of cargo at large load forces.

physics.bio-ph

Dynamics of learning in coupled oscillators tutored with delayed reinforcements

In this work we analyze the solutions of a simple system of coupled phase oscillators in which the connectivity is learned dynamically. The model is inspired in the process of learning of birdsong by oscine birds. An oscillator acts as the generator of a basic rhythm, and drives slave oscillators which are responsible for different motor actions. The driving signal arrives to each driven oscillator through two different pathways. One of them is a "direct" pathway. The other one is a "reinforcement" pathway, through which the signal arrives delayed. The coupling coefficients between the driving oscillator and the slave ones evolve in time following a Hebbian-like rule. We discuss the conditions under which a driven oscillator is capable of learning to lock to the driver. The resulting phase difference and connectivity is a function of the delay of the reinforcement. Around some specific delays, the system is capable to generate dramatic changes in the phase difference between the driver and the driven systems. We discuss the dynamical mechanism responsible for this effect, and possible applications of this learning scheme.

q-bio.NC

Survival in the replicator model: Dynamics and statistics

We study the multi-species replicator model with linear fitness and random fitness matrices of various classes. By means of numerical resolution of the replicator equations, we determine the survival probability of a species in terms of its average interaction with the rest of the system. The role of the interaction pattern of the ecosystem in defining survival and extinction probabilities is emphasized.

nlin.AO

Strong enhancement of current, efficiency and mass separation in Brownian motors driven by non Gaussian noises

We study a Brownian motor driven by a colored non Gaussian noise source with a $q$-dependent probability distribution, where $q$ is a parameter indicating the departure from Gaussianity. For $q=1$ the noise is Gaussian (Ornstein--Uhlenbeck), while, for $q>1$, the probability distribution falls like a power law. In the latter case, we find a marked enhancement of both the current and the efficiency of the Brownian motor in the overdamped regime. We also analyze the case with inertia and show that, again for $q > 1$, a remarkable increase of the ratchet's mass separation capability is obtained.

cond-mat.stat-mech