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Seishi Kudo

Publications and source records attributed to Seishi Kudo.

2 recordsLinked to original sources

Evaluation of the duty ratio of bacterial flagellar motor by a dynamic load control

Bacterial flagellar motor is one of the most complex and sophisticated nano machineries in nature. A duty ratio $D$ is a fraction of time that the stator and the rotor interact and is a fundamental property to characterize the motor but remains to be determined. It is known that the stator units of the motor bind to and dissociate from the motor dynamically to control the motor torque depending on the load on the motor. At low load where the kinetics such as a proton translocation speed limits the rotation rate, the dependency of the rotation rate on the number of stator units $N$ infers $D$; the dependency becomes larger for smaller $D$. Contradicting observations supporting both the small and large $D$ have been reported. A dilemma is that it is difficult to explore a broad range of $N$ at low load because the stator units easily dissociate, and $N$ is limited to one or two at vanishing load. Here, we develop an electrorotation method to dynamically control the load on the flagellar motor of {\it Salmonella} with a calibrated magnitude of the torque. By instantly reducing the load for keeping $N$ high, we observed that the speed at low load depends on $N$, implying a small duty ratio. We recovered the torque-speed curves of individual motors and evaluated the duty ratio to be $0.14 \pm 0.04$ from the correlation between the torque at high load and the rotation rate at low load.

physics.bio-ph↗

Nonequilibrium energetics of a single F1-ATPase molecule

Molecular motors drive mechanical motions utilizing the free energy liberated from chemical reactions such as ATP hydrolysis. Although it is essential to know the efficiency of this free energy transduction, it has been a challenge due to the system's microscopic scale. Here, we evaluate the single-molecule energetics of a rotary molecular motor, F1-ATPase, by applying a recently derived nonequilibrium equality together with an electrorotation method. We show that the sum of the heat flow through the probe's rotational degree of freedom and the work against external load is almost equal to the free energy change per a single ATP hydrolysis under various conditions. This implies that F1-ATPase works at an efficiency of nearly 100% in a thermally fluctuating environment.

cond-mat.stat-mech↗