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Semi Harrabi

Publications and source records attributed to Semi Harrabi.

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Overcoming data scarcity through multi-center federated learning for organs-at-risk segmentation in pediatric upper abdominal radiotherapy

Deep learning-based organs/structures-at-risk(OARs) auto-contouring models can improve radiotherapy workflows, but models trained on adult data often underperform in pediatric patients. Developing robust pediatric-specific models is hindered by data scarcity and fragmentation across centers. Federated learning (FL) enables privacy-preserving collaborative training without the need for data sharing. We evaluated the feasibility and performance of FL for developing pediatric-specific OAR segmentation models across two European medical centers. Computed tomography (CT) images from pediatric patients from Utrecht and Heidelberg with a renal tumor or abdominal neuroblastoma were retrospectively collected and locally processed. An nnU-Net-based framework segmented 19 OARs using local and FL schemes. FL was implemented with secure weight exchange on a cloud storage across institutional firewalls. Performance was assessed using the Dice similarity coefficient (DSC), 95th percentile Hausdorff distance, and mean surface distance. Robustness to patient orientation, false-positive segmentation of surgically removed kidneys, and failure cases were identified. A total of 310 postoperative CTs from 272 patients (105 renal tumors, 167 neuroblastomas) were included. Local models performed well on their respective center data but showed significantly reduced cross-center performance for four to seven of the nine evaluated OARs (DSC). In contrast, the FL model matched local performance for at least seven of nine OARs and achieved the best cross-center results across three metrics, with DSC gains of 0.003-0.007 over local models. FL also maintained stable performance across patient orientations and reduced false-positive kidney segmentations. Real-world FL improves cross-center robustness of CT-based OAR segmentation models in pediatric upper abdominal tumors.

physics.med-ph

Direct optimization of the probability of lesion origin in proton treatment planning for low-grade glioma patients

In proton therapy of low-grade glioma (LGG) patients, contrast-enhancing brain lesions (CEBLs) on magnetic resonance imaging are considered predictive of late radiation-induced lesions. From the observation that CEBLs tend to concentrate in regions of increased dose-averaged linear energy transfer (LET$_{\text{d}}$) and proximal to the ventricular system, the probability of lesion origin (POLO) model has been established as a multivariate logistic regression model for the voxel-wise probability prediction of the CEBL origin. To date, leveraging the predictive power of the POLO model for treatment planning relies on hand tuning the dose and LET$_{\text{d}}$ distribution to minimize the resulting probability predictions. In this paper, we therefore propose automated POLO model-based treatment planning by directly integrating POLO calculation and optimization into plan optimization for LGG patients. We introduce an extension of the original POLO model including a volumetric correction factor, and a model-based optimization scheme featuring a linear reformulation of the model together with feasible optimization functions based on the predicted POLO values. The developed framework is implemented in the open-source treatment planning toolkit matRad. Our framework can generate clinically acceptable treatment plans while automatically taking into account outcome predictions from the POLO model. It also supports the definition of customized POLO model-based objective and constraint functions. Optimization results from a sample LGG patient show that the POLO model-based outcome predictions can be minimized under expectable shifts in dose, LET$_{\text{d}}$, and POLO distributions, while sustaining target coverage ($\Delta_{\text{PTV}} \text{D95}_{RBE,fx}\approx{0.00}$, $\Delta_{\text{GTV}} \text{D95}_{RBE,fx}\approx{0.03}$), even when NTCP is strongly down-regulated.

physics.med-ph