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Sen Pei

Publications and source records attributed to Sen Pei.

At least 19 recordsLinked to original sources

Topology-induced Operators Reveal Complementary Graph Representations without Training

Graph representation learning has largely focused on designing increasingly sophisticated models to transform graph topology into vector representations, or embeddings. However, the extent to which embedding quality depends on model learning, rather than on the underlying topological transformations, remains unclear. Here, we show that informative embeddings can be derived without complicated model design and gradient-based training. Propagating random features through implicit hierarchical structures induced by random walks and anonymous walks yields embeddings that capture node proximity and structural role, respectively. These two training-free embeddings preserve complementary aspects of graph organization and perform competitively with classic and recent methods across various node-, edge-, and graph-level tasks. They often require substantially less computation, resulting in a favorable quality-efficiency trade-off. Combining the two types of embeddings further improves inference quality of some tasks compared with using either embedding type alone. Our results suggest that informative graph embeddings can arise from carefully chosen topological transformations before any learning operation is applied.

cs.LG

Critical Thresholds in Non-Pharmaceutical Interventions for Epidemic Control

Non-pharmaceutical interventions, such as contact tracing and social distancing, are critical for controlling epidemic outbreaks, yet their dynamic interactions remain underexplored. We introduce a probabilistic framework to analyze the synergy between contact tracing speed, quantified by the contact tracing period $\tau$, and the average number of close contacts, $\bar{k}_+$, reflecting social distancing measures. We identify critical thresholds ($R=1$) that separate pandemic and contained phases in the $\bar{k}_{+}-\tau$ plane, validated using high-resolution data from Shenzhen's 2022 Omicron outbreak (1,187 cases, 86,451 contacts). Our findings show that contact tracing alone can contain diseases with $R_0 < 2.12$ (95% CI 2.07-2.16), covering 43.33% of major infectious diseases, while combining with social distancing extends control to $R_0 < 7.82$ (95% CI 7.70-7.93), encompassing 86.67% of pathogens. These results, supported by empirical data, highlight the efficacy of rapid tracing and targeted social distancing as alternatives to mass PCR testing. Our framework offers actionable insights for optimizing NPI strategies, though challenges in scaling to regions with higher tracing miss rates or weaker infrastructure underscore the need for adaptive, data-driven policies.

physics.soc-ph

InfraredGP: Efficient Graph Partitioning via Spectral Graph Neural Networks with Negative Corrections

Graph partitioning (GP), a.k.a. community detection, is a classic problem that divides nodes of a graph into densely-connected blocks. From a perspective of graph signal processing, we find that graph Laplacian with a negative correction can derive graph frequencies beyond the conventional range $[0, 2]$. To explore whether the low-frequency information beyond this range can encode more informative properties about community structures, we propose InfraredGP. It (\romannumeral1) adopts a spectral GNN as its backbone combined with low-pass filters and a negative correction mechanism, (\romannumeral2) only feeds random inputs to this backbone, (\romannumeral3) derives graph embeddings via one feed-forward propagation (FFP) without any training, and (\romannumeral4) obtains feasible GP results by feeding the derived embeddings to BIRCH. Surprisingly, our experiments demonstrate that based solely on the negative correction mechanism that amplifies low-frequency information beyond $[0, 2]$, InfraredGP can derive distinguishable embeddings for some standard clustering modules (e.g., BIRCH) and obtain high-quality results for GP without any training. Following the IEEE HPEC Graph Challenge benchmark, we evaluate InfraredGP for both static and streaming GP, where InfraredGP can achieve much better efficiency (e.g., 16x-23x faster) and competitive quality over various baselines. We have made our code public at https://github.com/KuroginQin/InfraredGP

cs.LG

Enhancing structural resilience in healthcare through patient flow network

Large-scale disasters, such as pandemics and climate-related events, place extraordinary pressure on healthcare providers due to extreme demand surges. Managing these surges is essential to sustaining healthcare resilience. Although numerous studies on healthcare resilience, far less attention has been given to physicians and to how patterns of patient movement can help redistribute demand and alleviate stress on overburdened providers. In this study, we analyzed billions of electronic medical records documenting patient visits to primary care physicians (PCPs) to construct inter-regional patient flow networks across the U.S. During the COVID-19 pandemic, we observed that cross-regional flow rose to 2.81%, compared to the pre-pandemic level of 2.08%. This redistribution absorbed, on average, 58% of the excess stress on PCPs, meaning more than half of the surging demand was handled by patients' moves to less burdened regions, an absolute 43 percentage point improvement from the pre-pandemic baseline of 15%. Further analysis suggests that strengthening cross-regional patient flow could allow the healthcare system to absorb even more stress and reduce the demand for PCPs. These findings provide structural insights for the healthcare system to enhance its pandemic preparedness and disaster responses, and to improve patient care during crises.

cs.SI

Healthcare system resilience and adaptability to pandemic disruptions in the United States

Understanding healthcare system resilience has become paramount, particularly in the wake of the COVID-19 pandemic, which imposed unprecedented burdens on healthcare services and severely impacted public health. Resilience is defined as the system's ability to absorb, recover from, and adapt to disruptions; however, despite extensive studies on this subject, we still lack empirical evidence and mathematical tools to quantify its adaptability (the ability of the system to adjust to and learn from disruptions). By analyzing millions of patients' electronic medical records across US states, we find that the COVID-19 pandemic caused two successive waves of disruptions within the healthcare systems, enabling natural experiment analysis of the adaptive capacity for each system to adapt to past disruptions. We generalize the quantification framework and find that the US healthcare systems exhibit substantial adaptability but only a moderate level of resilience. When considering system responses across racial groups, Black and Hispanic groups were more severely impacted by pandemic disruptions than White and Asian groups. Physician abundance is the key characteristic for determining healthcare system resilience. Our results offer vital guidance in designing resilient and sustainable healthcare systems to prepare for future waves of disruptions akin to COVID-19 pandemics.

cs.SI

Image Background Serves as Good Proxy for Out-of-distribution Data

Out-of-distribution (OOD) detection empowers the model trained on the closed image set to identify unknown data in the open world. Though many prior techniques have yielded considerable improvements in this research direction, two crucial obstacles still remain. Firstly, a unified perspective has yet to be presented to view the developed arts with individual designs, which is vital for providing insights into future work. Secondly, we expect sufficient natural OOD supervision to promote the generation of compact boundaries between the in-distribution (ID) and OOD data without collecting explicit OOD samples. To tackle these issues, we propose a general probabilistic framework to interpret many existing methods and an OOD-data-free model, namely \textbf{S}elf-supervised \textbf{S}ampling for \textbf{O}OD \textbf{D}etection (SSOD). SSOD efficiently exploits natural OOD signals from the ID data based on the local property of convolution. With these supervisions, it jointly optimizes the OOD detection and conventional ID classification in an end-to-end manner. Extensive experiments reveal that SSOD establishes competitive state-of-the-art performance on many large-scale benchmarks, outperforming the best previous method by a large margin, \eg, reporting \textbf{-6.28\%} FPR95 and \textbf{+0.77\%} AUROC on ImageNet, \textbf{-19.01\%} FPR95 and \textbf{+3.04\%} AUROC on CIFAR-10, and top-ranked performance on hard OOD datasets, \ie, ImageNet-O and OpenImage-O.

cs.CV

Influence Maximization based on Simplicial Contagion Models in Hypergraphs

In recent years, the exploration of node centrality has received significant attention and extensive investigation, primarily fuelled by its applications in diverse domains such as product recommendations, opinion propagation, disease spread, and other scenarios requiring the maximization of node influence. Despite various perspectives emphasizing the indispensability of higher-order networks, research specifically delving into node centrality within the realm of hypergraphs has been relatively constrained. This paper focuses on the problem of influence maximization on the Simplicial Contagion Model (SCM), using the susceptible-infected-recovered (SIR) model as an example. To find practical solutions to this optimization problem, we have developed a theoretical framework based on message passing process and conducted stability analysis of equilibrium solutions for the self-consistent equations. Furthermore, we introduce a metric called collective influence and propose an adaptive algorithm, known as the Collective Influence Adaptive (CIA), to identify influential propagators in the spreading process. Notably, our algorithm distinguishes itself by prioritizing collective influence over individual influence, resulting in demonstrably superior performance, a characteristic substantiated by a comprehensive array of experiments.

cs.SI

Influence Maximization based on Threshold Model in Hypergraphs

Influence Maximization problem has received significant attention in recent years due to its application in various do?mains such as product recommendation, public opinion dissemination, and disease propagation. This paper proposes a theoretical analysis framework for collective influence in hypergraphs, focusing on identifying a set of seeds that maximize influence in threshold models. Firstly, we extend the Message Passing method from pairwise networks to hypergraphs to accurately describe the activation process in threshold models. Then we introduce the concept of hyper?graph collective influence (HCI) to measure the influence of nodes. Subsequently, We design an algorithm, HCI-TM, to select the Influence Maximization Set, taking into account both node and hyperedge activation. Numerical simu?lations demonstrate that HCI-TM outperforms several competing algorithms in synthetic and real-world hypergraphs. Furthermore, we find that HCI can be used as a tool to predict the occurrence of cascading phenomena. Notably, we find that HCI-TM algorithm works better for larger average hyperdegrees in Erdos-R\'enyi (ER) hypergraphs and smaller power-law exponents in scale-free (SF) hypergraphs.

cs.SI

AutoMatch: A Large-scale Audio Beat Matching Benchmark for Boosting Deep Learning Assistant Video Editing

The explosion of short videos has dramatically reshaped the manners people socialize, yielding a new trend for daily sharing and access to the latest information. These rich video resources, on the one hand, benefited from the popularization of portable devices with cameras, but on the other, they can not be independent of the valuable editing work contributed by numerous video creators. In this paper, we investigate a novel and practical problem, namely audio beat matching (ABM), which aims to recommend the proper transition time stamps based on the background music. This technique helps to ease the labor-intensive work during video editing, saving energy for creators so that they can focus more on the creativity of video content. We formally define the ABM problem and its evaluation protocol. Meanwhile, a large-scale audio dataset, i.e., the AutoMatch with over 87k finely annotated background music, is presented to facilitate this newly opened research direction. To further lay solid foundations for the following study, we also propose a novel model termed BeatX to tackle this challenging task. Alongside, we creatively present the concept of label scope, which eliminates the data imbalance issues and assigns adaptive weights for the ground truth during the training procedure in one stop. Though plentiful short video platforms have flourished for a long time, the relevant research concerning this scenario is not sufficient, and to the best of our knowledge, AutoMatch is the first large-scale dataset to tackle the audio beat matching problem. We hope the released dataset and our competitive baseline can encourage more attention to this line of research. The dataset and codes will be made publicly available.

cs.SD

DPCIPI: A pre-trained deep learning model for predicting cross-immunity between drifted strains of Influenza A/H3N2

Predicting cross-immunity between viral strains is vital for public health surveillance and vaccine development. Traditional neural network methods, such as BiLSTM, could be ineffective due to the lack of lab data for model training and the overshadowing of crucial features within sequence concatenation. The current work proposes a less data-consuming model incorporating a pre-trained gene sequence model and a mutual information inference operator. Our methodology utilizes gene alignment and deduplication algorithms to preprocess gene sequences, enhancing the model's capacity to discern and focus on distinctions among input gene pairs. The model, i.e., DNA Pretrained Cross-Immunity Protection Inference model (DPCIPI), outperforms state-of-the-art (SOTA) models in predicting hemagglutination inhibition titer from influenza viral gene sequences only. Improvement in binary cross-immunity prediction is 1.58% in F1, 2.34% in precision, 1.57% in recall, and 1.57% in Accuracy. For multilevel cross-immunity improvements, the improvement is 2.12% in F1, 3.50% in precision, 2.19% in recall, and 2.19% in Accuracy. Our study highlights the potential of pre-trained gene models in revolutionizing gene sequence-related prediction tasks. With more gene sequence data being harnessed and larger models trained, we foresee a significant impact of pre-trained models on clinical and public health applications.

cs.CE

Free Lunch for Generating Effective Outlier Supervision

When deployed in practical applications, computer vision systems will encounter numerous unexpected images (\emph{{i.e.}}, out-of-distribution data). Due to the potentially raised safety risks, these aforementioned unseen data should be carefully identified and handled. Generally, existing approaches in dealing with out-of-distribution (OOD) detection mainly focus on the statistical difference between the features of OOD and in-distribution (ID) data extracted by the classifiers. Although many of these schemes have brought considerable performance improvements, reducing the false positive rate (FPR) when processing open-set images, they necessarily lack reliable theoretical analysis and generalization guarantees. Unlike the observed ways, in this paper, we investigate the OOD detection problem based on the Bayes rule and present a convincing description of the reason for failures encountered by conventional classifiers. Concretely, our analysis reveals that refining the probability distribution yielded by the vanilla neural networks is necessary for OOD detection, alleviating the issues of assigning high confidence to OOD data. To achieve this effortlessly, we propose an ultra-effective method to generate near-realistic outlier supervision. Extensive experiments on large-scale benchmarks reveal that our proposed \texttt{BayesAug} significantly reduces the FPR95 over 12.50\% compared with the previous schemes, boosting the reliability of machine learning systems. The code will be made publicly available.

cs.CV

Age-specific transmission dynamics of SARS-CoV-2 during the first two years of the pandemic

During its first two years, the SARS-CoV-2 pandemic manifested as multiple waves shaped by complex interactions between variants of concern, non-pharmaceutical interventions, and the immunological landscape of the population. Understanding how the age-specific epidemiology of SARS-CoV-2 has evolved throughout the pandemic is crucial for informing policy decisions. We developed an inference-based modelling approach to reconstruct the burden of true infections and hospital admissions in children, adolescents and adults over the seven waves of four variants (wild-type, Alpha, Delta, Omicron BA.1) during the first two years of the pandemic, using the Netherlands as the motivating example. We find that reported cases are a considerable underestimate and a generally poor predictor of true infection burden, especially because case reporting differs by age. The contribution of children and adolescents to total infection and hospitalization burden increased with successive variants and was largest during the Omicron BA.1 period. Before the Delta period, almost all infections were primary infections occurring in naive individuals. During the Delta and Omicron BA.1 periods, primary infections were common in children but relatively rare in adults who experienced either re-infections or breakthrough infections. Our approach can be used to understand age-specific epidemiology through successive waves in other countries where random community surveys uncovering true SARS-CoV-2 dynamics are absent but basic surveillance and statistics data are available.

physics.soc-ph

Characterizing human collective behaviours of COVID-19 in Hong Kong

People are likely to engage in collective behaviour online during extreme events, such as the COVID-19 crisis, to express their awareness, actions and concerns. Hong Kong has implemented stringent public health and social measures (PHSMs) to curb COVID-19 epidemic waves since the first COVID-19 case was confirmed on 22 January 2020. People are likely to engage in collective behaviour online during extreme events, such as the COVID-19 crisis, to express their awareness, actions and concerns. Here, we offer a framework to evaluate interactions among individuals emotions, perception, and online behaviours in Hong Kong during the first two waves (February to June 2020) and found a strong correlation between online behaviours of Google search and the real-time reproduction numbers. To validate the model output of risk perception, we conducted 10 rounds of cross-sectional telephone surveys from February 1 through June 20 in 2020 to quantify risk perception levels over time. Compared with the survey results, the estimates of the risk perception of individuals using our network-based mechanistic model capture 80% of the trend of people risk perception (individuals who worried about being infected) during the studied period. We may need to reinvigorate the public by engaging people as part of the solution to live their lives with reduced risk.

cs.SI

Exploring Domain Incremental Video Highlights Detection with the LiveFood Benchmark

Video highlights detection (VHD) is an active research field in computer vision, aiming to locate the most user-appealing clips given raw video inputs. However, most VHD methods are based on the closed world assumption, i.e., a fixed number of highlight categories is defined in advance and all training data are available beforehand. Consequently, existing methods have poor scalability with respect to increasing highlight domains and training data. To address above issues, we propose a novel video highlights detection method named Global Prototype Encoding (GPE) to learn incrementally for adapting to new domains via parameterized prototypes. To facilitate this new research direction, we collect a finely annotated dataset termed LiveFood, including over 5,100 live gourmet videos that consist of four domains: ingredients, cooking, presentation, and eating. To the best of our knowledge, this is the first work to explore video highlights detection in the incremental learning setting, opening up new land to apply VHD for practical scenarios where both the concerned highlight domains and training data increase over time. We demonstrate the effectiveness of GPE through extensive experiments. Notably, GPE surpasses popular domain incremental learning methods on LiveFood, achieving significant mAP improvements on all domains. Concerning the classic datasets, GPE also yields comparable performance as previous arts. The code is available at: https://github.com/ForeverPs/IncrementalVHD_GPE.

cs.CV

Domain Decorrelation with Potential Energy Ranking

Machine learning systems, especially the methods based on deep learning, enjoy great success in modern computer vision tasks under experimental settings. Generally, these classic deep learning methods are built on the \emph{i.i.d.} assumption, supposing the training and test data are drawn from a similar distribution independently and identically. However, the aforementioned \emph{i.i.d.} assumption is in general unavailable in the real-world scenario, and as a result, leads to sharp performance decay of deep learning algorithms. Behind this, domain shift is one of the primary factors to be blamed. In order to tackle this problem, we propose using \textbf{Po}tential \textbf{E}nergy \textbf{R}anking (PoER) to decouple the object feature and the domain feature (\emph{i.e.,} appearance feature) in given images, promoting the learning of label-discriminative features while filtering out the irrelevant correlations between the objects and the background. PoER helps the neural networks to capture label-related features which contain the domain information first in shallow layers and then distills the label-discriminative representations out progressively, enforcing the neural networks to be aware of the characteristic of objects and background which is vital to the generation of domain-invariant features. PoER reports superior performance on domain generalization benchmarks, improving the average top-1 accuracy by at least 1.20\% compared to the existing methods. Moreover, we use PoER in the ECCV 2022 NICO Challenge\footnote{https://nicochallenge.com}, achieving top place with only a vanilla ResNet-18. The code has been made available at https://github.com/ForeverPs/PoER.

cs.CV

Gradient Concealment: Free Lunch for Defending Adversarial Attacks

Recent studies show that the deep neural networks (DNNs) have achieved great success in various tasks. However, even the \emph{state-of-the-art} deep learning based classifiers are extremely vulnerable to adversarial examples, resulting in sharp decay of discrimination accuracy in the presence of enormous unknown attacks. Given the fact that neural networks are widely used in the open world scenario which can be safety-critical situations, mitigating the adversarial effects of deep learning methods has become an urgent need. Generally, conventional DNNs can be attacked with a dramatically high success rate since their gradient is exposed thoroughly in the white-box scenario, making it effortless to ruin a well trained classifier with only imperceptible perturbations in the raw data space. For tackling this problem, we propose a plug-and-play layer that is training-free, termed as \textbf{G}radient \textbf{C}oncealment \textbf{M}odule (GCM), concealing the vulnerable direction of gradient while guaranteeing the classification accuracy during the inference time. GCM reports superior defense results on the ImageNet classification benchmark, improving up to 63.41\% top-1 attack robustness (AR) when faced with adversarial inputs compared to the vanilla DNNs. Moreover, we use GCM in the CVPR 2022 Robust Classification Challenge, currently achieving \textbf{2nd} place in Phase II with only a tiny version of ConvNext. The code will be made available.

cs.CV

Targeted influence maximization in complex networks

Many real-world applications based on spreading processes in complex networks aim to deliver information to specific target nodes. However, it remains challenging to optimally select a set of spreaders to initiate the spreading process. In this paper, we study the targeted influence maximization problem using a susceptible-infected-recovered (SIR) model as an example. Formulated as a combinatorial optimization, the objective is to identify a given number of spreaders that can maximize the influence over target nodes while minimize the influence over non-target nodes. To find a practical solution to this optimization problem, we develop a theoretical framework based on a message passing process and perform a stability analysis on the equilibrium solution using non-backtracking (NB) matrices. We propose that the spreaders can be selected by imposing optimal perturbation on the equilibrium solution for the subgraph consisting of the target nodes and their multi-step nearest neighbors while avoiding such perturbation on the complement graph that excludes target nodes from the original network. We further introduce a metric, termed targeted collective influence, for each node to identify influential spreaders for targeted spreading processes. The proposed method, validated in both synthetic and real-world networks, outperforms other competing heuristic approaches. Our results provide a framework for analyzing the targeted influence maximization problem and a practical method to identify spreaders in real-world applications.

nlin.AO

Evaluating the impact of quarantine measures on COVID-19 spread

During the early stage of the COVID-19 pandemic, many countries implemented non-pharmaceutical interventions (NPIs) to control the transmission of SARS-CoV-2, the causative pathogen of COVID-19. Among those NPIs, quarantine measures were widely adopted and enforced through stay-at-home and shelter-in-place orders. Understanding the effectiveness of quarantine measures can inform decision-making and control planning during the ongoing COVID-19 pandemic and for future disease outbreaks. In this study, we use mathematical models to evaluate the impact of quarantine measures on COVID-19 spread in four cities that experienced large-scale outbreaks in the spring of 2020: Wuhan, New York, Milan, and London. We develop a susceptible-exposed-infected-removed (SEIR)-type model with a component of quarantine and couple this disease transmission model with a data assimilation method. By calibrating the model to case data, we estimate key epidemiological parameters before lockdown in each city. We further examine the impact of quarantine rates on COVID-19 spread after lockdown using model simulations. Results indicate that quarantine of susceptible and exposed individuals and undetected infections is necessary to contain the outbreak; however, the quarantine rates for these populations can be reduced through faster isolation of confirmed cases. We generate counterfactual simulations to estimate effectiveness of quarantine measures. Without quarantine measures, the cumulative confirmed cases could be 73, 22, 43 and 93 times higher than reported numbers within 40 days after lockdown in Wuhan, New York, Milan, and London. Our findings underscore the essential role of quarantine during the early phase of the pandemic.

q-bio.PE