arXiv subjects

Serafim Rodrigues

Publications and source records attributed to Serafim Rodrigues.

25 records · Page 2Linked to original sources

arXiv2013

On the electrodynamics of neural networks

We present a microscopic approach for the coupling of cortical activity, as resulting from proper dipole currents of pyramidal neurons, to the electromagnetic field in extracellular fluid in presence of diffusion and Ohmic conduction. Starting from a full-fledged three-compartment model of a single pyramidal neuron, including shunting and dendritic propagation, we derive an observation model for dendritic dipole currents in extracellular space and thereby for the dendritic field potential that contributes to the local field potential of a neural population. Under reasonable simplifications, we then derive a leaky integrate-and-fire model for the dynamics of a neural network, which facilitates comparison with existing neural network and observation models. In particular, we compare our results with a related model by means of numerical simulations. Performing a continuum limit, neural activity becomes represented by a neural field equation, while an observation model for electric field potentials is obtained from the interaction of cortical dipole currents with charge density in non-resistive extracellular space as described by the Nernst-Planck equation. Our work consistently satisfies the widespread dipole assumption discussed in the neuroscientific literature.

q-bio.NC↗

arXiv2013

Short-term synaptic plasticity in the deterministic Tsodyks-Markram model leads to unpredictable network dynamics

Short-Term Synaptic Plasticity (STSP) strongly affects the neural dynamics of cortical networks. The Tsodyks and Markram (TM) model for STSP accurately accounts for a wide range of physiological responses at different types of cortical synapses. Here, we report for the first time a route to chaotic behavior via a Shilnikov homoclinic bifurcation that dynamically organises some of the responses in the TM model. In particular, the presence of such a homoclinic bifurcation strongly affects the shape of the trajectories in the phase space and induces highly irregular transient dynamics; indeed, in the vicinity of the Shilnikov homoclinic bifurcation, the number of population spikes and their precise timing are unpredictable and highly sensitive to the initial conditions. Such an irregular deterministic dynamics has its counterpart in stochastic/network versions of the TM model: the existence of the Shilnikov homoclinic bifurcation generates complex and irregular spiking patterns and --acting as a sort of springboard-- facilitates transitions between the down-state and unstable periodic orbits. The interplay between the (deterministic) homoclinic bifurcation and stochastic effects may give rise to some of the complex dynamics observed in neural systems.

q-bio.NC↗

arXiv2013

Extremum seeking via continuation techniques for optimizing biogas production in the chemostat

We consider the chemostat model with the substrate concentration as the single measurement. We propose a control strategy that drives the system at a steady state maximizing the gas production without the knowledge of the specific growth rate. Our approach separates the extremum seeking problem from the feedback control problem such that each of the two subproblems can be solved with relatively simple algorithms. We are then free to choose any numerical optimization algorithm. We give a demonstration for two choices: one is based on slow-fast dynamics and numerical continuation, the other is a combination of golden-section and Newton iteration. The method copes with non-monotonic growth functions.

math.OC↗

arXiv2013

A method for the reconstruction of unknown non-monotonic growth functions in the chemostat

We propose an adaptive control law that allows one to identify unstable steady states of the open-loop system in the single-species chemostat model without the knowledge of the growth function. We then show how one can use this control law to trace out (reconstruct) the whole graph of the growth function. The process of tracing out the graph can be performed either continuously or step-wise. We present and compare both approaches. Even in the case of two species in competition, which is not directly accessible with our approach due to lack of controllability, feedback control improves identifiability of the non-dominant growth rate.

math.DS↗

arXiv2012

A biophysical observation model for field potentials of networks of leaky integrate-and-fire neurons

We present a biophysical approach for the coupling of neural network activity as resulting from proper dipole currents of cortical pyramidal neurons to the electric field in extracellular fluid. Starting from a reduced threecompartment model of a single pyramidal neuron, we derive an observation model for dendritic dipole currents in extracellular space and thereby for the dendritic field potential that contributes to the local field potential of a neural population. This work aligns and satisfies the widespread dipole assumption that is motivated by the "open-field" configuration of the dendritic field potential around cortical pyramidal cells. Our reduced three-compartment scheme allows to derive networks of leaky integrate-and-fire models, which facilitates comparison with existing neural network and observation models. In particular, by means of numerical simulations we compare our approach with an ad hoc model by Mazzoni et al. [Mazzoni, A., S. Panzeri, N. K. Logothetis, and N. Brunel (2008). Encoding of naturalistic stimuli by local field potential spectra in networks of excitatory and inhibitory neurons. PLoS Computational Biology 4 (12), e1000239], and conclude that our biophysically motivated approach yields substantial improvement.

q-bio.NC↗

arXiv2012

Coupling continuous neural networks to the electromagnetic field in nervous tissue

We present a microscopic approach for the coupling of cortical activity, as resulting from proper dipole currents of pyramidal neurons, to the electromagnetic field in extracellular fluid in presence of diffusion and Ohmic conduction. As a result, neural activity becomes represented by a continuous neural field equation, while an observation model for electric field potentials is obtained from the interaction of cortical dipole currents with charge density in non-resistive extracellular space as described by the Nernst-Planck equation.

cond-mat.dis-nn↗

arXiv2010

Evidence for frequency-dependent extracellular impedance from the transfer function between extracellular and intracellular potentials

We examine the properties of the transfer function F_T = V_m / V_{LFP} between the intracellular membrane potential (V_m) and the local field potential (V_{LFP}) in cerebral cortex. We first show theoretically that, in the subthreshold regime, the frequency dependence of the extracellular medium and that of the membrane potential have a clear incidence on F_T. The calculation of F_T from experiments and the matching with theoretical expressions is possible for desynchronized states where individual current sources can be considered as independent. Using a mean-field approximation, we obtain a method to estimate the impedance of the extracellular medium without injecting currents. We examine the transfer function for bipolar (differential) LFPs and compare to simultaneous recordings of V_m and V_{LFP} during desynchronized states in rat barrel cortex in vivo. The experimentally derived F_T matches the one derived theoretically, only if one assumes that the impedance of the extracellular medium is frequency-dependent, and varies as 1/sqrt(omega) (Warburg impedance) for frequencies between 3 and 500 Hz. This constitutes indirect evidence that the extracellular medium is non-resistive, which has many possible consequences for modeling LFPs.

q-bio.NC↗