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Sergey Petoukhov

Publications and source records attributed to Sergey Petoukhov.

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The rules of long DNA-sequences and tetra-groups of oligonucleotides

The article represents a new class of hidden symmetries in long sequences of oligonucleotides of single stranded DNA from their representative set. These symmetries are an addition to symmetries described by the second parity rule of Chargaff. These new symmetries and their rules concern collective probabilities of oligonucleotides from special tetra-groups and their subgroups in long DNA-texts including complete sets of chromosomes of human and some model organisms. These rules of tetra-group probabilities are considered as possible candidacies for the role of universal rules of long DNA-sequences. A quantum-informational model of genetic symmetries of these collective probabilities is proposed on the basis of the known quantum-mechanic statement that quantum state of a multicomponent system is defined by the tensor product of quantum states of its subsystems. In this model, nitrogenous bases C, T, G, A of DNA are represented as computational basis states of 2-qubit quantum CTGA-systems. The biological meaning of these new quantum-information symmetries of long DNA texts is associated with the common ability of all living organisms to grow and develop on the basis of incorporation into their body of new and new molecules of nutrients becoming new quantum-mechanic subsystems of the united quantum-mechanic organism. An important role of resonances, photons and photonic crystals in quantum information genetics is noted.

q-bio.OT

The genetic code, algebra of projection operators and problems of inherited biological ensembles

This article is devoted to applications of projection operators to simulate phenomenological properties of the molecular-genetic code system. Oblique projection operators are under consideration, which are connected with matrix representations of the genetic coding system in forms of the Rademacher and Hadamard matrices. Evidences are shown that sums of such projectors give abilities for adequate simulations of ensembles of inherited biological phenomena including ensembles of biological cycles, morphogenetic ensembles of phyllotaxis patterns, mirror-symmetric patterns, etc. For such modeling, the author proposes multidimensional vector spaces, whose subspaces are under a selective control (or coding) by means of a set of matrix operators on base of genetic projectors. Development of genetic biomechanics is discussed. The author proposes and describes special systems of multidimensional numbers under names united-hypercomplex numbers, which attracted his attention when he studied genetic systems and genetic matrices. New rules of long nucleotide sequences are described on the base of the proposed notion of tetra-groups of equivalent oligonucleotides. Described results can be used for developing algebraic biology, bio-technical applications and some other fields of science and technology.

q-bio.OT