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Seth R. Flaxman

Publications and source records attributed to Seth R. Flaxman.

4 recordsLinked to original sources

Social Media Data for Population Mapping: A Bayesian Approach to Address Representativeness and Privacy Challenges

Accurate and timely population data are essential for disaster response and humanitarian planning, but traditional censuses often cannot capture rapid demographic changes. Social media data offer a promising alternative for dynamic population monitoring, but their representativeness remains poorly understood and stringent privacy requirements limit their reliability. Here, we address these limitations in the context of the Philippines by calibrating Facebook user counts with the country's 2020 census figures. First, we find that differential privacy techniques commonly applied to social media-based population datasets disproportionately mask low-population areas. To address this, we propose a Bayesian imputation approach to recover missing values, restoring data coverage for $5.5\%$ of rural areas. Further, using the imputed social media data and leveraging predictors such as urbanisation level, demographic composition, and socio-economic status, we develop a statistical model for the proportion of Facebook users in each municipality, which links observed Facebook user numbers to the true population levels. Out-of-sample validation demonstrates strong result generalisability, with errors as low as ${\approx}18\%$ and ${\approx}24\%$ for urban and rural Facebook user proportions, respectively. We further demonstrate that accounting for overdispersion and spatial correlations in the data is crucial to obtain accurate estimates and appropriate credible intervals. Crucially, as predictors change over time, the models can be used to regularly update the population predictions, providing a dynamic complement to census-based estimates. These results have direct implications for humanitarian response in disaster-prone regions and offer a general framework for using biased social media signals to generate reliable and timely population data.

stat.AP

Fast approximate Bayesian inference of HIV indicators using PCA adaptive Gauss-Hermite quadrature

Naomi is a spatial evidence synthesis model used to produce district-level HIV epidemic indicators in sub-Saharan Africa. Multiple outcomes of policy interest, including HIV prevalence, HIV incidence, and antiretroviral therapy treatment coverage are jointly modelled using both household survey data and routinely reported health system data. The model is provided as a tool for countries to input their data to and generate estimates with during a yearly process supported by UNAIDS. Previously, inference has been conducted using empirical Bayes and a Gaussian approximation, implemented via the TMB R package. We propose a new inference method based on an extension of adaptive Gauss-Hermite quadrature to deal with more than 20 hyperparameters. Using data from Malawi, our method improves the accuracy of inferences for model parameters, while being substantially faster to run than Hamiltonian Monte Carlo with the No-U-Turn sampler. Our implementation leverages the existing TMB C++ template for the model's log-posterior, and is compatible with any model with such a template.

stat.ME

Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data

The Hawkes process and its extensions effectively model self-excitatory phenomena including earthquakes, viral pandemics, financial transactions, neural spike trains and the spread of memes through social networks. The usefulness of these stochastic process models within a host of economic sectors and scientific disciplines is undercut by the processes' computational burden: complexity of likelihood evaluations grows quadratically in the number of observations for both the temporal and spatiotemporal Hawkes processes. We show that, with care, one may parallelize these calculations using both central and graphics processing unit implementations to achieve over 100-fold speedups over single-core processing. Using a simple adaptive Metropolis-Hastings scheme, we apply our high-performance computing framework to a Bayesian analysis of big gunshot data generated in Washington D.C. between the years of 2006 and 2019, thereby extending a past analysis of the same data from under 10,000 to over 85,000 observations. To encourage wide-spread use, we provide hpHawkes, an open-source R package, and discuss high-level implementation and program design for leveraging aspects of computational hardware that become necessary in a big data setting.

stat.AP

Variable Prioritization in Nonlinear Black Box Methods: A Genetic Association Case Study

The central aim in this paper is to address variable selection questions in nonlinear and nonparametric regression. Motivated by statistical genetics, where nonlinear interactions are of particular interest, we introduce a novel and interpretable way to summarize the relative importance of predictor variables. Methodologically, we develop the "RelATive cEntrality" (RATE) measure to prioritize candidate genetic variants that are not just marginally important, but whose associations also stem from significant covarying relationships with other variants in the data. We illustrate RATE through Bayesian Gaussian process regression, but the methodological innovations apply to other "black box" methods. It is known that nonlinear models often exhibit greater predictive accuracy than linear models, particularly for phenotypes generated by complex genetic architectures. With detailed simulations and two real data association mapping studies, we show that applying RATE enables an explanation for this improved performance.

stat.ME