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Seyed Yahya Shirazi

Publications and source records attributed to Seyed Yahya Shirazi.

5 recordsLinked to original sources

EEG Foundation Challenge: From Cross-Task to Cross-Subject EEG Decoding

Current electroencephalogram (EEG) decoding models are typically trained on small numbers of subjects performing a single task. Here, we introduce a large-scale, code-submission-based competition comprising two challenges. First, the Transfer Challenge asks participants to build and test a model that can zero-shot decode new tasks and new subjects from their EEG data. Second, the Psychopathology factor prediction Challenge asks participants to infer subject measures of mental health from EEG data. For this, we use an unprecedented, multi-terabyte dataset of high-density EEG signals (128 channels) recorded from over 3,000 child to young adult subjects engaged in multiple active and passive tasks. We provide several tunable neural network baselines for each of these two challenges, including a simple network and demographic-based regression models. Developing models that generalise across tasks and individuals will pave the way for ML network architectures capable of adapting to EEG data collected from diverse tasks and individuals. Similarly, predicting mental health-relevant personality trait values from EEG might identify objective biomarkers useful for clinical diagnosis and design of personalised treatment for psychological conditions. Ultimately, the advances spurred by this challenge could contribute to the development of computational psychiatry and useful neurotechnology, and contribute to breakthroughs in both fundamental neuroscience and applied clinical research.

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UNISEP: A Unified Sensor Placement Framework for Human Motion Capture and Wearables

The proliferation of wearable sensors and monitoring technologies has created a need for standardized sensor placement protocols. While existing standards like the Surface Electromyography for Non-Invasive Assessment of Muscles (SENIAM) recommendations for electromyography (EMG) and the 10-20 system for electroencephalography (EEG) address modality-specific applications, no comprehensive framework spans different sensing modalities and applications. We present the Unified Sensor Placement (UNISEP) framework to facilitate reproducible handling of human movement and physiological data across various systems and research domains. The framework provides a method to describe coordinate systems and placement protocols based on anatomical landmarks, and is designed to complement existing data-sharing standards such as the Brain Imaging Data Structure (BIDS) and Hierarchical Event Descriptors (HED). Even during its proposal stage, the UNISEP approach has been adopted by the EMG-BIDS extension (BIDS version 1.11.0), confirming the community need for a unified, machine-readable sensor placement framework. The UNISEP framework facilitates consistency, reproducibility, and interoperability in applications ranging from lab-based clinical biomechanics to continuous health monitoring in everyday life.

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Quantifying Data Requirements for EEG Independent Component Analysis Using AMICA

Independent Component Analysis (ICA) is an important step in EEG processing for a wide-ranging set of applications. However, ICA requires well-designed studies and data collection practices to yield optimal results. Past studies have focused on quantitative evaluation of the differences in quality produced by different ICA algorithms as well as different configurations of parameters for AMICA, a multimodal ICA algorithm that is considered the benchmark against which other algorithms are measured. Here, the effect of the data quantity versus the number of channels on decomposition quality is explored. AMICA decompositions were run on a 71 channel dataset with 13 subjects while randomly subsampling data to correspond to specific ratios of the number of frames in a dataset to the channel count. Decomposition quality was evaluated for the varying quantities of data using measures of mutual information reduction (MIR) and the near dipolarity of components. We also note that an asymptotic trend can be seen in the increase of MIR and a general increasing trend in near dipolarity with increasing data, but no definitive plateau in these metrics was observed, suggesting that the benefits of collecting additional EEG data may extend beyond common heuristic thresholds and continue to enhance decomposition quality.

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Hierarchical Event Descriptor library schema for EEG data annotation

Standardizing terminology to annotate electrophysiological events can improve both computational research and clinical care. Sharing data enriched with standard terms can facilitate data exploration, from case studies to mega-analyses. The machine readability of such electrophysiological event annotations is essential for performing analyses efficiently across software tools and packages. Hierarchical Event Descriptors (HED) provide a framework for describing events in neuroscience experiments. HED library schemas extend the standard HED schema vocabulary to include specialized vocabularies, such as standardized clinical terms for electrophysiological events. The Standardized Computer-based Organized Reporting of EEG (SCORE) defines terms for annotating EEG events, including artifacts. This study developed a HED library schema for SCORE, making the terms machine-readable. We demonstrate that the HED-SCORE library schema can be used to annotate events in EEG data stored in the Brain Imaging Data Structure (BIDS). Clinicians and researchers worldwide can now use the HED-SCORE library schema to annotate and compute on electrophysiological data obtained from the human brain.

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An Exploration of Optimal Parameters for Efficient Blind Source Separation of EEG Recordings Using AMICA

EEG continues to find a multitude of uses in both neuroscience research and medical practice, and independent component analysis (ICA) continues to be an important tool for analyzing EEG. A multitude of ICA algorithms for EEG decomposition exist, and in the past, their relative effectiveness has been studied. AMICA is considered the benchmark against which to compare the performance of other ICA algorithms for EEG decomposition. AMICA exposes many parameters to the user to allow for precise control of the decomposition. However, several of the parameters currently tend to be set according to "rules of thumb" shared in the EEG community. Here, AMICA decompositions are run on data from a collection of subjects while varying certain key parameters. The running time and quality of decompositions are analyzed based on two metrics: Pairwise Mutual Information (PMI) and Mutual Information Reduction (MIR). Recommendations for selecting starting values for parameters are presented.

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