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Shahar Cohen

Publications and source records attributed to Shahar Cohen.

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Radiometric Thermal Imaging Dataset of Laboratory Rats with Anatomical Segmentation Masks

Infrared thermography provides a contact-free, restraint-free method to record surface temperatures. It serves as a valuable marker for thermoregulatory responses in laboratory animal stress and pharmacology research. However, the analysis of these images is currently bottlenecked by the manual delineation of anatomical regions. To date, no public dataset has provided paired radiometric thermal frames of rats with pixel-level body-part labels. We present a dataset of 1,655 quality-controlled radiometric thermal frames from 25 laboratory rats. Each frame is paired with a dense four-class anatomical segmentation mask (background, head, body, and tail) and the raw $480 \times 640$ temperature matrix (rows $\times$ columns) in degrees Celsius. This ensures every label is registered directly to the physical temperature it describes rather than a color-mapped rendering. The frames originate from two pharmacological cohorts where interventions alter thermoregulation in opposite directions: ethanol, which induces peripheral vasodilation, and ketamine, which affects central thermoregulation. This provides a wide and physiologically diverse range of surface temperature regimes. Aggregated across the dataset, the per-class temperatures follow a head~$>$~body~$>$~tail ordering in physical units. To demonstrate that the data support pixel-level segmentation directly from the radiometric channel, we present an exploratory U-Net segmentation pipeline that attains a subject-level cross-validated mean intersection-over-union of $0.895 \pm 0.006$. The dataset provides a reuse-ready benchmark for thermal semantic segmentation and for downstream physiological and stress-phenotyping analyses.

eess.IV

Expert-Guided Class-Conditional Goodness-of-Fit Scores for Interpretable Classification with Informative Missingness: An Application to Seismic Monitoring

We study a classification problem with three key challenges: pervasive informative missingness, the integration of partial prior expert knowledge into the learning process, and the need for interpretable decision rules. We propose a framework that encodes prior knowledge through an expert-guided class-conditional model for one or more classes, and use this model to construct a small set of interpretable goodness-of-fit features. The features quantify how well the observed data agree with the expert model, isolating the contributions of different aspects of the data, including both observed and missing components. These features are combined with a few transparent auxiliary summaries in a simple discriminative classifier, resulting in a decision rule that is easy to inspect and justify. We develop and apply the framework in the context of seismic monitoring used to assess compliance with the Comprehensive Nuclear-Test-Ban Treaty. We show that the method has strong potential as a transparent screening tool, reducing workload for expert analysts. A simulation designed to isolate the contribution of the proposed framework shows that this interpretable expert-guided method can even outperform strong standard machine-learning classifiers, particularly when training samples are small.

stat.ML