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Shai Carmi

Publications and source records attributed to Shai Carmi.

22 records · Page 2Linked to original sources

Transport of multiple users in complex networks

We study the transport properties of model networks such as scale-free and Erdős-Rényi networks as well as a real network. We consider the conductance $G$ between two arbitrarily chosen nodes where each link has the same unit resistance. Our theoretical analysis for scale-free networks predicts a broad range of values of $G$, with a power-law tail distribution $Φ_{\rm SF}(G)\sim G^{-g_G}$, where $g_G=2λ-1$, and $λ$ is the decay exponent for the scale-free network degree distribution. We confirm our predictions by large scale simulations. The power-law tail in $Φ_{\rm SF}(G)$ leads to large values of $G$, thereby significantly improving the transport in scale-free networks, compared to Erdős-Rényi networks where the tail of the conductivity distribution decays exponentially. We develop a simple physical picture of the transport to account for the results. We study another model for transport, the \emph{max-flow} model, where conductance is defined as the number of link-independent paths between the two nodes, and find that a similar picture holds. The effects of distance on the value of conductance are considered for both models, and some differences emerge. We then extend our study to the case of multiple sources, where the transport is define between two \emph{groups} of nodes. We find a fundamental difference between the two forms of flow when considering the quality of the transport with respect to the number of sources, and find an optimal number of sources, or users, for the max-flow case. A qualitative (and partially quantitative) explanation is also given.

cond-mat.dis-nn↗

Connectivity and expression in protein networks: Proteins in a complex are uniformly expressed

We explore the interplay between the protein-protein interactions network and the expression of the interacting proteins. It is shown that interacting proteins are expressed in significantly more similar cellular concentrations. This is largely due to interacting pairs which are part of protein complexes. We solve a generic model of complex formation and show explicitly that complexes form most efficiently when their members have roughly the same concentrations. Therefore, the observed similarity in interacting protein concentrations could be attributed to optimization for efficiency of complex formation.

q-bio.MN↗

Search in Complex Networks : a New Method of Naming

We suggest a method for routing when the source does not posses full information about the shortest path to the destination. The method is particularly useful for scale-free networks, and exploits its unique characteristics. By assigning new (short) names to nodes (aka labelling) we are able to reduce significantly the memory requirement at the routers, yet we succeed in routing with high probability through paths very close in distance to the shortest ones.

cs.NI↗

MEDUSA - New Model of Internet Topology Using k-shell Decomposition

The k-shell decomposition of a random graph provides a different and more insightful separation of the roles of the different nodes in such a graph than does the usual analysis in terms of node degrees. We develop this approach in order to analyze the Internet's structure at a coarse level, that of the "Autonomous Systems" or ASes, the subnetworks out of which the Internet is assembled. We employ new data from DIMES (see http://www.netdimes.org), a distributed agent-based mapping effort which at present has attracted over 3800 volunteers running more than 7300 DIMES clients in over 85 countries. We combine this data with the AS graph information available from the RouteViews project at Univ. Oregon, and have obtained an Internet map with far more detail than any previous effort. The data suggests a new picture of the AS-graph structure, which distinguishes a relatively large, redundantly connected core of nearly 100 ASes and two components that flow data in and out from this core. One component is fractally interconnected through peer links; the second makes direct connections to the core only. The model which results has superficial similarities with and important differences from the "Jellyfish" structure proposed by Tauro et al., so we call it a "Medusa." We plan to use this picture as a framework for measuring and extrapolating changes in the Internet's physical structure. Our k-shell analysis may also be relevant for estimating the function of nodes in the "scale-free" graphs extracted from other naturally-occurring processes.

cond-mat.dis-nn↗