arXiv subjects

Shakeeb Murtaza

Publications and source records attributed to Shakeeb Murtaza.

14 recordsLinked to original sources

arXiv2026

Seeing What Shouldn't Be There: Counterfactual GANs for Medical Image Attribution

Ascription of an image gives insights into the objects that influence the classification of the whole image or its pixels towards a specific category. These insights help radiologists to visualize deformities in medical imaging. Most of the existing visualization techniques are based on discriminative models and highlight regions of the input image participating in the decision-making of a classifier. However, these approaches do not take all noticeable objects into account as their objective is to classify the input by using a minimal set of discriminative features. To overcome the issue, a counterfactual explanation (CX) based class-oriented feature attribution method is proposed. A counterfactual explanation (CX) explicates a causal reasoning process of the form: "if X had not happened, then Y would not have happened". The method is built on generative adversarial networks (GANs) with a cyclical-consistent loss function. We evaluate our method on three datasets: synthetic, tuberculosis and BraTS. All experiments confirm the efficacy of the proposed method. This study also highlighted the limitations of existing counterfactual explanation techniques in producing plausible counterfactual instances (CIs). Accompanying CXs with believable CIs thus provides self-explanatory analogy-based explanations. To this end, a CI generation method is proposed. Also, a novel technique is used to evaluate the quality of CI. The baseline results are produced on the BraTS dataset.

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arXiv2026

InterPartAbility: Phrase-Region Grounding for Interpretable Text-to-Image Person Re-Identification

Text-to-image person re-identification (TI-ReID) relies on natural-language text descriptions to retrieve top matching individuals from a gallery of reference images. While recent large vision-language models (VLMs) achieve strong retrieval performance, their decisions remain largely uninterpretable. Existing interpretability approaches in TI-ReID rely solely on slot-attention to highlight attended regions, but fail to reliably bind visual regions to semantically meaningful concepts, limiting interpretation to qualitative visualizations over a restricted vocabulary. This paper introduces InterPartAbility, an interpretable TI-ReID method that performs explicit part-wise matching and enables phrase-region grounding. Unlike parameter-heavy slot-attention methods that yield only qualitative interpretability, our open-vocabulary patch-phrase interaction module (PPIM) guides a standard TI-ReID model with concept-level phrases. Concept-based part phrases provide evidence that encourages the model to attend to the corresponding local image regions. InterPartAbility further leverages CLIP ViT self-attention to produce spatially concentrated patch activations aligned with each part-level phrase, yielding grounded explanation maps. Finally, a quantitative interpretability protocol for TI-ReID is introduced that extends current perturbation-based evaluation metrics into the TI-Reid domain. This includes a counterfactual region removal that measures retrieval degradation when top-ranked explanatory regions are removed. Empirical results on three challenging benchmarks show that InterPartAbility can achieve SOTA interpretability performance under these metrics, while sustaining competitive retrieval accuracy.

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arXiv2025

DART$^3$: Leveraging Distance for Test Time Adaptation in Person Re-Identification

Person re-identification (ReID) models are known to suffer from camera bias, where learned representations cluster according to camera viewpoints rather than identity, leading to significant performance degradation under (inter-camera) domain shifts in real-world surveillance systems when new cameras are added to camera networks. State-of-the-art test-time adaptation (TTA) methods, largely designed for classification tasks, rely on classification entropy-based objectives that fail to generalize well to ReID, thus making them unsuitable for tackling camera bias. In this paper, we introduce DART$^3$, a TTA framework specifically designed to mitigate camera-induced domain shifts in person ReID. DART$^3$ (Distance-Aware Retrieval Tuning at Test Time) leverages a distance-based objective that aligns better with image retrieval tasks like ReID by exploiting the correlation between nearest-neighbor distance and prediction error. Unlike prior ReID-specific domain adaptation methods, DART$^3$ requires no source data, architectural modifications, or retraining, and can be deployed in both fully black-box and hybrid settings. Empirical evaluations on multiple ReID benchmarks indicate that DART$^3$ and DART$^3$ LITE, a lightweight alternative to the approach, consistently outperforms state-of-the-art TTA baselines, making for a viable option to online learning to mitigate the adverse effects of camera bias.

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arXiv2025

CoLo-CAM: Class Activation Mapping for Object Co-Localization in Weakly-Labeled Unconstrained Videos

Leveraging spatiotemporal information in videos is critical for weakly supervised video object localization (WSVOL) tasks. However, state-of-the-art methods only rely on visual and motion cues, while discarding discriminative information, making them susceptible to inaccurate localizations. Recently, discriminative models have been explored for WSVOL tasks using a temporal class activation mapping (CAM) method. Although their results are promising, objects are assumed to have limited movement from frame to frame, leading to degradation in performance for relatively long-term dependencies. This paper proposes a novel CAM method for WSVOL that exploits spatiotemporal information in activation maps during training without constraining an object's position. Its training relies on Co-Localization, hence, the name CoLo-CAM. Given a sequence of frames, localization is jointly learned based on color cues extracted across the corresponding maps, by assuming that an object has similar color in consecutive frames. CAM activations are constrained to respond similarly over pixels with similar colors, achieving co-localization. This improves localization performance because the joint learning creates direct communication among pixels across all image locations and over all frames, allowing for transfer, aggregation, and correction of localizations. Co-localization is integrated into training by minimizing the color term of a conditional random field (CRF) loss over a sequence of frames/CAMs. Extensive experiments on two challenging YouTube-Objects datasets of unconstrained videos show the merits of our method, and its robustness to long-term dependencies, leading to new state-of-the-art performance for WSVOL task.

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arXiv2025

TeD-Loc: Text Distillation for Weakly Supervised Object Localization

Weakly supervised object localization (WSOL) models are trained using only image-level class labels. They can predict both the object class and spatial regions corresponding to the object, without requiring explicit bounding box annotations. Given their reliance on classification objectives, traditional WSOL methods, like class activation mapping, tend to focus on the most discriminative object regions, often missing the full spatial extent. Although vision-language models such as CLIP encode rich semantic priors, they are not directly suited for WSOL because global text and class-token embeddings are not explicitly aligned with local patch embeddings, making patch-level localization difficult without additional mechanisms. Recent methods such as GenPrompt address this limitation, but at the cost of increased complexity, as they rely on conditional denoising and elaborate prompt-learning strategies. We propose Text Distillation for Localization (TeD-Loc), which transfers knowledge from CLIP text embeddings to patch embeddings through contrastive alignment, thereby enabling patch-level foreground/background localization. A localization-guided classification module is also introduced that uses localization scores to aggregate foreground patch embeddings for joint classification and localization in a single model. In addition, a QR-based orthogonalization of class text embeddings is applied before distillation to improve discrimination for semantically similar classes. Extensive experiments show that TeD-Loc improves Top-1 Loc by ~5% on CUB and ILSVRC, and PxAP by ~31% on histopathology benchmarks, while achieving more efficient inference than GenPrompt.

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arXiv2024

SR-CACO-2: A Dataset for Confocal Fluorescence Microscopy Image Super-Resolution

Confocal fluorescence microscopy is one of the most accessible and widely used imaging techniques for the study of biological processes at the cellular and subcellular levels. Scanning confocal microscopy allows the capture of high-quality images from thick three-dimensional (3D) samples, yet suffers from well-known limitations such as photobleaching and phototoxicity of specimens caused by intense light exposure, limiting its applications. Cellular damage can be alleviated by changing imaging parameters to reduce light exposure, often at the expense of image quality. Machine/deep learning methods for single-image super-resolution (SISR) can be applied to restore image quality by upscaling lower-resolution (LR) images to yield high-resolution images (HR). These SISR methods have been successfully applied to photo-realistic images due partly to the abundance of publicly available data. In contrast, the lack of publicly available data partly limits their application and success in scanning confocal microscopy. In this paper, we introduce a large scanning confocal microscopy dataset named SR-CACO-2 that is comprised of low- and high-resolution image pairs marked for three different fluorescent markers. It allows the evaluation of performance of SISR methods on three different upscaling levels (X2, X4, X8). SR-CACO-2 contains the human epithelial cell line Caco-2 (ATCC HTB-37), and it is composed of 2,200 unique images, captured with four resolutions and three markers, forming 9,937 image patches for SISR methods. We provide benchmarking results for 16 state-of-the-art methods of the main SISR families. Results show that these methods have limited success in producing high-resolution textures. The dataset is freely accessible under a Creative Commons license (CC BY-NC-SA 4.0). Our dataset, code and pretrained weights for SISR methods are available: https://github.com/sbelharbi/sr-caco-2.

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arXiv2024

Leveraging Transformers for Weakly Supervised Object Localization in Unconstrained Videos

Weakly-Supervised Video Object Localization (WSVOL) involves localizing an object in videos using only video-level labels, also referred to as tags. State-of-the-art WSVOL methods like Temporal CAM (TCAM) rely on class activation mapping (CAM) and typically require a pre-trained CNN classifier. However, their localization accuracy is affected by their tendency to minimize the mutual information between different instances of a class and exploit temporal information during training for downstream tasks, e.g., detection and tracking. In the absence of bounding box annotation, it is challenging to exploit precise information about objects from temporal cues because the model struggles to locate objects over time. To address these issues, a novel method called transformer based CAM for videos (TrCAM-V), is proposed for WSVOL. It consists of a DeiT backbone with two heads for classification and localization. The classification head is trained using standard classification loss (CL), while the localization head is trained using pseudo-labels that are extracted using a pre-trained CLIP model. From these pseudo-labels, the high and low activation values are considered to be foreground and background regions, respectively. Our TrCAM-V method allows training a localization network by sampling pseudo-pixels on the fly from these regions. Additionally, a conditional random field (CRF) loss is employed to align the object boundaries with the foreground map. During inference, the model can process individual frames for real-time localization applications. Extensive experiments on challenging YouTube-Objects unconstrained video datasets show that our TrCAM-V method achieves new state-of-the-art performance in terms of classification and localization accuracy.

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arXiv2024

Source-Free Domain Adaptation of Weakly-Supervised Object Localization Models for Histology

Given the emergence of deep learning, digital pathology has gained popularity for cancer diagnosis based on histology images. Deep weakly supervised object localization (WSOL) models can be trained to classify histology images according to cancer grade and identify regions of interest (ROIs) for interpretation, using inexpensive global image-class annotations. A WSOL model initially trained on some labeled source image data can be adapted using unlabeled target data in cases of significant domain shifts caused by variations in staining, scanners, and cancer type. In this paper, we focus on source-free (unsupervised) domain adaptation (SFDA), a challenging problem where a pre-trained source model is adapted to a new target domain without using any source domain data for privacy and efficiency reasons. SFDA of WSOL models raises several challenges in histology, most notably because they are not intended to adapt for both classification and localization tasks. In this paper, 4 state-of-the-art SFDA methods, each one representative of a main SFDA family, are compared for WSOL in terms of classification and localization accuracy. They are the SFDA-Distribution Estimation, Source HypOthesis Transfer, Cross-Domain Contrastive Learning, and Adaptively Domain Statistics Alignment. Experimental results on the challenging Glas (smaller, breast cancer) and Camelyon16 (larger, colon cancer) histology datasets indicate that these SFDA methods typically perform poorly for localization after adaptation when optimized for classification.

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arXiv2024

A Realistic Protocol for Evaluation of Weakly Supervised Object Localization

Weakly Supervised Object Localization (WSOL) allows training deep learning models for classification and localization (LOC) using only global class-level labels. The absence of bounding box (bbox) supervision during training raises challenges in the literature for hyper-parameter tuning, model selection, and evaluation. WSOL methods rely on a validation set with bbox annotations for model selection, and a test set with bbox annotations for threshold estimation for producing bboxes from localization maps. This approach, however, is not aligned with the WSOL setting as these annotations are typically unavailable in real-world scenarios. Our initial empirical analysis shows a significant decline in LOC performance when model selection and threshold estimation rely solely on class labels and the image itself, respectively, compared to using manual bbox annotations. This highlights the importance of incorporating bbox labels for optimal model performance. In this paper,a new WSOL evaluation protocol is proposed that provides LOC information without the need for manual bbox annotations. In particular, we generated noisy pseudo-boxes from a pretrained off-the-shelf region proposal method such as Selective Search, CLIP, and RPN for model selection. These bboxes are also employed to estimate the threshold from LOC maps, circumventing the need for test-set bbox annotations. Our experiments with several WSOL methods on challenging natural and medical image datasets show that using the proposed pseudo-bboxes for validation facilitates the model selection and threshold estimation, with LOC performance comparable to models selected using GT bboxes on the validation set and threshold estimation on the test set. It also outperforms models selected using class-level labels, and then dynamically thresholded with only LOC maps.

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arXiv2023

DiPS: Discriminative Pseudo-Label Sampling with Self-Supervised Transformers for Weakly Supervised Object Localization

Self-supervised vision transformers (SSTs) have shown great potential to yield rich localization maps that highlight different objects in an image. However, these maps remain class-agnostic since the model is unsupervised. They often tend to decompose the image into multiple maps containing different objects while being unable to distinguish the object of interest from background noise objects. In this paper, Discriminative Pseudo-label Sampling (DiPS) is introduced to leverage these class-agnostic maps for weakly-supervised object localization (WSOL), where only image-class labels are available. Given multiple attention maps, DiPS relies on a pre-trained classifier to identify the most discriminative regions of each attention map. This ensures that the selected ROIs cover the correct image object while discarding the background ones, and, as such, provides a rich pool of diverse and discriminative proposals to cover different parts of the object. Subsequently, these proposals are used as pseudo-labels to train our new transformer-based WSOL model designed to perform classification and localization tasks. Unlike standard WSOL methods, DiPS optimizes performance in both tasks by using a transformer encoder and a dedicated output head for each task, each trained using dedicated loss functions. To avoid overfitting a single proposal and promote better object coverage, a single proposal is randomly selected among the top ones for a training image at each training step. Experimental results on the challenging CUB, ILSVRC, OpenImages, and TelDrone datasets indicate that our architecture, in combination with our transformer-based proposals, can yield better localization performance than state-of-the-art methods.

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arXiv2023

Counterfactual Explanation and Instance-Generation using Cycle-Consistent Generative Adversarial Networks

The image-based diagnosis is now a vital aspect of modern automation assisted diagnosis. To enable models to produce pixel-level diagnosis, pixel-level ground-truth labels are essentially required. However, since it is often not straight forward to obtain the labels in many application domains such as in medical image, classification-based approaches have become the de facto standard to perform the diagnosis. Though they can identify class-salient regions, they may not be useful for diagnosis where capturing all of the evidences is important requirement. Alternatively, a counterfactual explanation (CX) aims at providing explanations using a casual reasoning process of form "If X has not happend, Y would not heppend". Existing CX approaches, however, use classifier to explain features that can change its predictions. Thus, they can only explain class-salient features, rather than entire object of interest. This hence motivates us to propose a novel CX strategy that is not reliant on image classification. This work is inspired from the recent developments in generative adversarial networks (GANs) based image-to-image domain translation, and leverages to translate an abnormal image to counterpart normal image (i.e. counterfactual instance CI) to find discrepancy maps between the two. Since it is generally not possible to obtain abnormal and normal image pairs, we leverage Cycle-Consistency principle (a.k.a CycleGAN) to perform the translation in unsupervised way. We formulate CX in terms of a discrepancy map that, when added from the abnormal image, will make it indistinguishable from the CI. We evaluate our method on three datasets including a synthetic, tuberculosis and BraTS dataset. All these experiments confirm the supremacy of propose method in generating accurate CX and CI.

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arXiv2022

Discriminative Sampling of Proposals in Self-Supervised Transformers for Weakly Supervised Object Localization

Drones are employed in a growing number of visual recognition applications. A recent development in cell tower inspection is drone-based asset surveillance, where the autonomous flight of a drone is guided by localizing objects of interest in successive aerial images. In this paper, we propose a method to train deep weakly-supervised object localization (WSOL) models based only on image-class labels to locate object with high confidence. To train our localizer, pseudo labels are efficiently harvested from a self-supervised vision transformers (SSTs). However, since SSTs decompose the scene into multiple maps containing various object parts, and do not rely on any explicit supervisory signal, they cannot distinguish between the object of interest and other objects, as required WSOL. To address this issue, we propose leveraging the multiple maps generated by the different transformer heads to acquire pseudo-labels for training a deep WSOL model. In particular, a new Discriminative Proposals Sampling (DiPS) method is introduced that relies on a CNN classifier to identify discriminative regions. Then, foreground and background pixels are sampled from these regions in order to train a WSOL model for generating activation maps that can accurately localize objects belonging to a specific class. Empirical results on the challenging TelDrone dataset indicate that our proposed approach can outperform state-of-art methods over a wide range of threshold values over produced maps. We also computed results on CUB dataset, showing that our method can be adapted for other tasks.

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arXiv2022

Constrained Sampling for Class-Agnostic Weakly Supervised Object Localization

Self-supervised vision transformers can generate accurate localization maps of the objects in an image. However, since they decompose the scene into multiple maps containing various objects, and they do not rely on any explicit supervisory signal, they cannot distinguish between the object of interest from other objects, as required in weakly-supervised object localization (WSOL). To address this issue, we propose leveraging the multiple maps generated by the different transformer heads to acquire pseudo-labels for training a WSOL model. In particular, a new discriminative proposals sampling method is introduced that relies on a pretrained CNN classifier to identify discriminative regions. Then, foreground and background pixels are sampled from these regions in order to train a WSOL model for generating activation maps that can accurately localize objects belonging to a specific class. Empirical results on the challenging CUB benchmark dataset indicate that our proposed approach can outperform state-of-art methods over a wide range of threshold values. Our method provides class activation maps with a better coverage of foreground object regions w.r.t. the background.

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arXiv2020

Text-to-Image Generation with Attention Based Recurrent Neural Networks

Conditional image modeling based on textual descriptions is a relatively new domain in unsupervised learning. Previous approaches use a latent variable model and generative adversarial networks. While the formers are approximated by using variational auto-encoders and rely on the intractable inference that can hamper their performance, the latter is unstable to train due to Nash equilibrium based objective function. We develop a tractable and stable caption-based image generation model. The model uses an attention-based encoder to learn word-to-pixel dependencies. A conditional autoregressive based decoder is used for learning pixel-to-pixel dependencies and generating images. Experimentations are performed on Microsoft COCO, and MNIST-with-captions datasets and performance is evaluated by using the Structural Similarity Index. Results show that the proposed model performs better than contemporary approaches and generate better quality images. Keywords: Generative image modeling, autoregressive image modeling, caption-based image generation, neural attention, recurrent neural networks.

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