arXiv subjects

Shamit Shrivastava

Publications and source records attributed to Shamit Shrivastava.

10 recordsLinked to original sources

arXiv2023

Optimization of a Hydrodynamic Computational Reservoir through Evolution

As demand for computational resources reaches unprecedented levels, research is expanding into the use of complex material substrates for computing. In this study, we interface with a model of a hydrodynamic system, under development by a startup, as a computational reservoir and optimize its properties using an evolution in materio approach. Input data are encoded as waves applied to our shallow water reservoir, and the readout wave height is obtained at a fixed detection point. We optimized the readout times and how inputs are mapped to the wave amplitude or frequency using an evolutionary search algorithm, with the objective of maximizing the system's ability to linearly separate observations in the training data by maximizing the readout matrix determinant. Applying evolutionary methods to this reservoir system substantially improved separability on an XNOR task, in comparison to implementations with hand-selected parameters. We also applied our approach to a regression task and show that our approach improves out-of-sample accuracy. Results from this study will inform how we interface with the physical reservoir in future work, and we will use these methods to continue to optimize other aspects of the physical implementation of this system as a computational reservoir.

cs.NE↗

arXiv2023

A New Paradigm of Reservoir Computing Exploiting Hydrodynamics

Nonlinear waves have played a historical role in laying the foundations of the science of complexity. Recently, they have also allowed the development of a new reservoir computing paradigm: neuromorphic computing by waves. In these systems, the information transmission acts as the excitation of wave dynamics, whose evolution processes the information to perform complex tasks at low energy consumption. To enable nonlinear hydrodynamic waves to do computing, we designed the Aqua-Photonic-Advantaged Computing Machine by Artificial Neural Networks (Aqua-PACMANN), a system where wave propagation in shallow water is the leading physical phenomenon, and the presence of electronics can be reduced to a CCD camera in detection. We show the realization of an XNOR logic gate as proof of concept of the Aqua-PACMANN's architecture and pave the way to a new class of fluid dynamic neuromorphic computing.

cs.ET↗

arXiv2019

Photo and acoustic emissions from the non-equilibrium phase transition at the interface during cavitation

This study investigates the emission of light and sound from cavitation caused by intense pressure pulses in water. Based on time-resolved measurements of (a) pressure waveform at the focus, (b) light scattering upon cavitation, (c) acoustic emission, and (d) photoemission (sonoluminescence) it is shown that emissions occur upon the creation or expansion as well as the collapse of the cavity. These results suggest that the thermodynamic irreversibility, resulting from non-equilibrium phase transition and changes in surface entropy, is a basis for photo and acoustic emissions during cavitation.

physics.flu-dyn↗

arXiv2019

Thermodynamic State of the Interface during Acoustic Cavitation in Lipid Suspensions

The thermodynamic state of lipid interfaces was observed during shock wave induced cavitation in water with sub-microsecond resolution, using the emission spectra of hydration-sensitive fluorescent probes co-localized at the interface. The experiments show that the cavitation threshold is lowest near a phase transition of the lipid interface. The cavitation collapse time and the maximum state change during cavitation are found to be a function of both the driving pressure and the initial state of the lipid interface. The experiments show dehydration and crystallization of lipids during the expansion phase of cavitation, suggesting that the heat of vaporization is absorbed from within the interface, which is adiabatically uncoupled from the free water. The study underlines the critical role of the thermodynamic state of the interface in cavitation dynamics, which has mechanistic implications for ultrasound-mediated drug delivery, acoustic nerve stimulation, ultrasound contrast agents, and the nucleation of ice during cavitation.

cond-mat.soft↗

arXiv2018

On measuring the acoustic state changes in lipid membranes using fluorescent probes

Ultrasound is increasingly being used to modulate the properties of biological membranes for applications in drug delivery and neuromodulation. While various studies have investigated the mechanical aspect of the interaction such as acoustic absorption and membrane deformation, it is not clear how these effects transduce into biological functions, for example, changes in the permeability or the enzymatic activity of the membrane. A critical aspect of the activity of an enzyme is the thermal fluctuations of its solvation or hydration shell. Thermal fluctuations are also known to be directly related to membrane permeability. Here solvation shell changes of lipid membranes subject to an acoustic impulse were investigated using a fluorescence probe, Laurdan. Laurdan was embedded in multi-lamellar lipid vesicles in water, which were exposed to broadband pressure impulses of the order of 1MPa peak amplitude and 10μs pulse duration. An instrument was developed to monitor changes in the emission spectrum of the dye at two wavelengths with sub-microsecond temporal resolution. The experiments show that changes in the emission spectrum, and hence the fluctuations of the solvation shell, are related to the changes in the thermodynamic state of the membrane and correlated with the compression and rarefaction of the incident sound wave. The results suggest that acoustic fields affect the state of a lipid membrane and therefore can potentially modulate the kinetics of channels and proteins embedded in the membrane.

cond-mat.soft↗

arXiv2018

Dissipation and detonation of shock waves in lipid monolayers

Lipid interfaces not only compartmentalize but also connect different reaction centers within a cell architecture. These interfaces have well defined specific heats and compressibilities, hence energy can propagate along them analogous to sound waves. Lipid monolayers prepared at the air-water interface of a Langmuir trough present an excellent model system to study such propagations. Here we propose that recent observations of two-dimensional shock waves observed in lipid monolayers also provide the evidence for the detonation of shock waves at such interfaces, i.e. chemical energy stored in the interface can be absorbed by a propagating shock front reinforcing it in the process. To this end, we apply the classical theory in shock waves and detonation in the context of a lipid interface and its thermodynamic state. Based on these insights it is claimed that the observed self-sustaining waves in lipid monolayers represent a detonation like phenomena that utilizes the latent heat of phase transition of the lipids. However, the general nature of these equations allows that other possible sources of chemical energy can contribute to the propagating shock wave in a similar manner. Consequently, the understanding is applied to the nerve pulse propagation that is believed to represent a similar phenomenon, to obtain a qualitative understanding of the pressure and temperature dependence of amplitude and threshold for action potentials. While we mainly discuss the case of a stable detonation, the problem of initiation of detonation at interfaces and corresponding heat exchange is briefly discussed, which also suggests a role for thunder like phenomena in pulse initiation.

physics.bio-ph↗

arXiv2017

Nonlinear fractional waves at elastic interfaces

We derive the nonlinear fractional surface wave equation that governs compression waves at an interface that is coupled to a viscous bulk medium. The fractional character of the differential equation comes from the fact that the effective thickness of the bulk layer that is coupled to the interface is frequency dependent. The nonlinearity arises from the nonlinear dependence of the interface compressibility on the local compression, which is obtained from experimental measurements and reflects a phase transition at the interface. Numerical solutions of our nonlinear fractional theory reproduce several experimental key features of surface waves in phospholipid monolayers at the air-water interface without freely adjustable fitting parameters. In particular, the propagation length of the surface wave abruptly increases at a threshold excitation amplitude. The wave velocity is found to be of the order of 40 cm/s both in experiments and theory and slightly increases as a function of the excitation amplitude. Nonlinear acoustic switching effects in membranes are thus shown to arise purely based on intrinsic membrane properties, namely the presence of compressibility nonlinearities that accompany phase transitions at the interface.

physics.flu-dyn↗

arXiv2015

Protons at the speed of sound: Specific biological signaling from physics

Local changes in pH are known to significantly alter the state and activity of proteins and in particular enzymes. pH variations induced by pulses propagating along soft interfaces (e.g. the lipid bilayer) would therefore constitute an important pillar towards a new physical mechanism of biochemical regulation and biological signaling. Here we investigate the pH-induced physical perturbation of a lipid interface and the physiochemical nature of the subsequent acoustic propagation. Pulses are stimulated by local acidification of a lipid monolayer and propagate, in analogy to sound, at velocities controlled by the two-dimensional compressibility of the interface. With transient local pH changes of 0.6 units directly observed at the interface and velocities up to 1.4 m/s this represents hitherto the fastest protonic communication observed. Furthermore simultaneously propagating mechanical and electrical changes in the lipid interface up to 8 mN/m and 100 mV are detected, exposing the thermodynamic nature of these pulses. Finally, these pulses are excitable only beyond a threshold for protonation, determined by the pKa of the lipid head groups. When combined with an enzymatic pH-optimum, the proposed communication can be very specific, thus providing a new physical basis for intra- and intercellular signaling via two-dimensional sound waves at interfaces.

physics.bio-ph↗

arXiv2015

Solitary Shock Waves and Adiabatic Phase Transition in Lipid Interfaces and Nerves

This study shows that the stability of solitary waves excited in a lipid monolayer near a phase boundary requires positive curvature of the adiabats, a known necessary condition in shock compression science. It is further shown that the condition results in a threshold for excitation, saturation of the wave amplitude and the splitting of the wave at the phase boundaries. Splitting in particular confirms that a hydrated lipid interface can undergo condensation on adiabatic heating thus showing retrograde behavior. Finally, using the new theoretical insights and state dependence of conduction velocity in nerves, the curvature of the adiabatic state diagram is shown to be closely tied to the thermodynamic blockage of nerve pulse propagation.

physics.bio-ph↗

arXiv2014

Evidence for 2D Solitary Sound Waves in a Lipid Controlled Interface and its Biological Implications

Biological membranes by virtue of their elastic properties should be capable of propagating localized perturbations analogous to sound waves. However, the existence and the possible role of such waves in communication in biology remains unexplored. Here we report the first observations of 2D solitary elastic pulses in lipid interfaces, excited mechanically and detected by FRET. We demonstrate that the nonlinearity near a maximum in the susceptibility of the lipid monolayer results in solitary pulses that also have a threshold for excitation. These experiments clearly demonstrate that the state of the interface regulates the propagation of pulses both qualitatively and quantitatively. We elaborate on the striking similarity of the observed phenomenon to nerve pulse propagation and a thermodynamic basis of cell signaling in general.

physics.bio-ph↗