arXiv subjects

Shane M. Parker

Publications and source records attributed to Shane M. Parker.

7 recordsLinked to original sources

arXiv2026

Perspective on a challenge: predicting the photochemistry of cyclobutanone

This Perspective is part of a Special Topic that explored the maturity of nonadiabatic molecular dynamics for predicting photochemical processes. In 2023, a prediction challenge was issued to the community of computational photochemists to simulate the photochemistry of cyclobutanone, photoexcited at 200 nm, and the resulting time-resolved MeV-UED signal. The challenge attracted 15 theoretical predictions from more than 70 researchers, employing a wide range of strategies for electronic structure and nonadiabatic molecular dynamics to predict the time-resolved MeV-UED signal before the experiment had been conducted at SLAC (Stanford, USA). The MeV-UED instrument at Shanghai Jiao Tong University was also used to provide a second independent time-resolved MeV-UED signal for the photochemistry of cyclobutanone. This Perspective discusses the various approaches and strategies used by the participants to predict the photochemistry of cyclobutanone. This work also summarizes the strengths and weaknesses of various methods used for photoexcitation, electronic structure, nonadiabatic dynamics, and calculation of observables, as agreed by the participants during a CECAM workshop dedicated to the results of the challenge and organized in Lausanne in April 2025. This Perspective also collects all the predicted time-resolved MeV-UED signals into a single figure, together with the experimental signal. This challenge (i) demonstrated the qualitative predictive power of nonadiabatic molecular dynamics and (ii) underscore the impact of electronic-structure theory on the outcome of the excited-state dynamics and the need for its careful benchmarking. This effort allowed the community to share practical strategies to perform nonadiabatic dynamics (discussed in the present Perspective) and constitutes a 'calibration' exercise for computational photochemistry.

physics.chem-ph↗

arXiv2025

Numerically Stable Resonating Hartree-Fock

The simulation of excited states at low computational cost remains an open challenge for electronic structure (ES) methods. While much attention has been given to orthogonal ES methods, relatively little work has been done to develop nonorthogonal ES methods for excited states, particularly those involving nonorthogonal orbital optimization. We present here a numerically stable formulation of the Resonating Hartree-Fock (ResHF) method that uses the matrix adjugate to remove numerical instabilities in ResHF arising from nearly orthogonal orbitals, and we demonstrate improvements to ResHF wavefunction optimization as a result. We then benchmark the performance of ResHF against Complete Active Space Self-Consistent Field in the avoided crossing of LiF, the torsional rotation of ethene, and the singlet-triplet energy gaps of a selection of small molecules. ResHF is a promising excited state method because it incorporates the orbital relaxation of state-specific methods, while retaining the correct state crossings of state-averaged approaches. Our open-source ResHF implementation, yucca, is available on GitLab.

physics.chem-ph↗

arXiv2024

Converging TDDFT calculations in 5 iterations with minimal auxiliary preconditioning

Eigenvalue problems and linear systems of equations involving large symmetric matrices are commonly solved in quantum chemistry using Krylov space methods, such as the Davidson algorithm. The preconditioner is a key component of Krylov space methods that accelerates convergence by improving the quality of new guesses at each iteration. We systematically design a new preconditioner for time-dependent density functional theory (TDDFT) calculations based on the recently introduced TDDFT-ris semiempirical model by re-tuning the empirical scaling factor and the angular momenta of a minimal auxiliary basis. The final preconditioner produced includes up to $d$-functions in the auxiliary basis and is named "rid". The rid preconditioner converges excitation energies and polarizabilities in 5-6 iterations on average, a factor of 2-3 faster than the conventional diagonal preconditioner, without changing the converged results. Thus, the rid preconditioner is a broadly applicable and efficient preconditioner for TDDFT calculations.

physics.chem-ph↗

arXiv2024

Ultrafast Photochemistry and Electron Diffraction for Cyclobutanone in the S2 State: Surface Hopping with Time-Dependent Density Functional Theory

We simulate the photodynamics of gas-phase cyclobutanone excited to the S$_2$ state using fewest switches surface hopping (FSSH) dynamics powered by time-dependent density functional theory (TDDFT). We predict a total C3+C2 photoproduct yield of 9%, with a C3:C2 product ratio of 1:8. Two primary S$_2$$\rightarrow$S$_1$ conical intersections are identified: $β$ stretch and CCH bend, with the higher energy $β$ stretch being associated with sub-picosecond S$_2$ decay. Excited state lifetimes computed with respect to electronic state populations were found to be 7.0 ps (S$_2$$\rightarrow$S$_1$) and 550 fs (S$_1$$\rightarrow$S$_0$). We also generate time-resolved difference pair distribution functions ($Δ$PDFs) from our TDDFT-FSSH dynamics results in order to generate direct comparisons to ultrafast electron diffraction experiment observables. Global and target analysis of time-resolved $Δ$PDFs produced a distinct set of lifetimes: i) a 0.462 ps decay, and ii) a 16.8 ps decay that both resemble the S$_2$ minimum, as well as iii) a long ($>$ nanosecond) decay that resembles the S$_1$ minimum geometry and the fully separated C3/C2 products. Finally, we contextualize our results by considering the impact of the most likely sources of significant errors.

physics.chem-ph↗

arXiv2023

Scalable synthesis and characterization of multilayer $γ$-graphyne, new carbon crystals with a small direct bandgap

$γ$-Graphyne is the most symmetric sp2/sp1 allotrope of carbon, which can be viewed as graphene uniformly expanded through insertion of two-carbon acetylenic units between all the aromatic rings. To date, synthesis of bulk $γ$-graphyne has remained a challenge. We here report the synthesis of multilayer $γ$-graphyne through crystallization-assisted irreversible cross-coupling polymerization. Comprehensive characterization of this new carbon phase is described, including synchrotron X-ray diffraction, electron diffraction, lateral force microscopy, Raman and infrared spectroscopy, and cyclic voltammetry. Experiments indicate that $γ$-graphyne is a 0.48 eV bandgap semiconductor, with a hexagonal a-axis spacing of 6.88 Å and an interlayer spacing of 3.48 Å, which is consistent with theoretical predictions. The observed crystal structure has an aperiodic sheet stacking. The material is thermally stable up to 240 $^\circ$C but undergoes a transformation at higher temperatures. While conventional 2D polymerizations and reticular chemistry rely on error correction through reversibility, we demonstrate that a periodic covalent lattice can be synthesized under purely kinetic control. The reported methodology is scalable and inspires extension to other allotropes of the graphyne family.

cond-mat.mtrl-sci↗

arXiv2015

Orbital Optimization in the Active Space Decomposition Model

We report the derivation and implementation of orbital optimization algorithms for the active space decomposition (ASD) model, which are extensions of complete active space self-consistent field (CASSCF) and its occupation-restricted variants in the conventional multiconfiguration electronic-structure theory. Orbital rotations between active subspaces are included in the optimization, which allows us to unambiguously partition the active space into subspaces, enabling application of ASD to electron and exciton dynamics in covalently linked chromophores. One- and two-particle reduced density matrices, which are required for evaluation of orbital gradient and approximate Hessian elements, are computed from the intermediate tensors in the ASD energy evaluation. Numerical results on 4-(2-naphthylmethyl)-benzaldehyde and [3$_6$]cyclophane and model Hamiltonian analyses of triplet energy transfer processes in the Closs systems are presented. Furthermore model Hamiltonians for hole and electron transfer processes in anti-[2.2](1,4)pentacenophane are studied using an occupation-restricted variant.

physics.chem-ph↗

arXiv2014

Active space decomposition with multiple sites: Density matrix renormalization group algorithm

We extend the active space decomposition method, recently developed by us, to more than two active sites using the density matrix renormalization group algorithm. The fragment wave functions are described by complete or restricted active-space wave functions. Numerical results are shown on a benzene pentamer and a perylene diimide trimer. It is found that the truncation errors in our method decrease almost exponentially with respect to the number of renormalization states M, allowing for numerically exact calculations (to a few microhartrees or less) with M = 128 in both cases. This rapid convergence is because the renormalization steps are used only for the interfragment electron correlation.

physics.chem-ph↗