arXiv subjects

Shanfeng Zhu

Publications and source records attributed to Shanfeng Zhu.

10 recordsLinked to original sources

arXiv2026

SHE: Trajectory-driven Safety Harness Evolution for LLM Agents

The safety of large language model (LLM) agents depends not only on model weights but also on the agent harness that manages context, memory, tools, permissions, and runtime control. Existing safety mechanisms often treat the harness as a fixed deployment artifact, limiting their ability to evolve with emerging risks. Moreover, coupled functions across harness components obscure safety responsibility attribution, making localized evolution difficult. We propose Safety Harness Evolution (SHE), a framework that learns evolving safe boundaries from rollout trajectories. SHE decomposes the harness into four artifacts with explicit safety responsibilities, including the System Prompt, Rule Bank, Safety Memory, and Tool Policy, defining clear functional boundaries for localized evolution. Based on this decomposition, SHE introduces an attribution-guided evolution loop that converts trajectory failures into structured diagnoses, learns artifact-specific boundary refinements, and selects evolved harnesses through safety-utility validation. Experiments on Agent-SafetyBench demonstrate that SHE effectively enhances safety through harness evolution, achieving a 3.1x ASR reduction compared with static SafeHarness, while also improving benign utility. The evolved harness further generalizes to unseen risks on the held-out AgentHarm benchmark and transfers across agent models without additional evolution.

cs.AI↗

arXiv2024

VANER: Leveraging Large Language Model for Versatile and Adaptive Biomedical Named Entity Recognition

Prevalent solution for BioNER involves using representation learning techniques coupled with sequence labeling. However, such methods are inherently task-specific, demonstrate poor generalizability, and often require dedicated model for each dataset. To leverage the versatile capabilities of recently remarkable large language models (LLMs), several endeavors have explored generative approaches to entity extraction. Yet, these approaches often fall short of the effectiveness of previouly sequence labeling approaches. In this paper, we utilize the open-sourced LLM LLaMA2 as the backbone model, and design specific instructions to distinguish between different types of entities and datasets. By combining the LLM's understanding of instructions with sequence labeling techniques, we use mix of datasets to train a model capable of extracting various types of entities. Given that the backbone LLMs lacks specialized medical knowledge, we also integrate external entity knowledge bases and employ instruction tuning to compel the model to densely recognize carefully curated entities. Our model VANER, trained with a small partition of parameters, significantly outperforms previous LLMs-based models and, for the first time, as a model based on LLM, surpasses the majority of conventional state-of-the-art BioNER systems, achieving the highest F1 scores across three datasets.

cs.CL↗

arXiv2023

Inspire the Large Language Model by External Knowledge on BioMedical Named Entity Recognition

Large language models (LLMs) have demonstrated dominating performance in many NLP tasks, especially on generative tasks. However, they often fall short in some information extraction tasks, particularly those requiring domain-specific knowledge, such as Biomedical Named Entity Recognition (NER). In this paper, inspired by Chain-of-thought, we leverage the LLM to solve the Biomedical NER step-by-step: break down the NER task into entity span extraction and entity type determination. Additionally, for entity type determination, we inject entity knowledge to address the problem that LLM's lack of domain knowledge when predicting entity category. Experimental results show a significant improvement in our two-step BioNER approach compared to previous few-shot LLM baseline. Additionally, the incorporation of external knowledge significantly enhances entity category determination performance.

cs.CL↗

arXiv2023

DMNER: Biomedical Entity Recognition by Detection and Matching

Biomedical named entity recognition (BNER) serves as the foundation for numerous biomedical text mining tasks. Unlike general NER, BNER require a comprehensive grasp of the domain, and incorporating external knowledge beyond training data poses a significant challenge. In this study, we propose a novel BNER framework called DMNER. By leveraging existing entity representation models SAPBERT, we tackle BNER as a two-step process: entity boundary detection and biomedical entity matching. DMNER exhibits applicability across multiple NER scenarios: 1) In supervised NER, we observe that DMNER effectively rectifies the output of baseline NER models, thereby further enhancing performance. 2) In distantly supervised NER, combining MRC and AutoNER as span boundary detectors enables DMNER to achieve satisfactory results. 3) For training NER by merging multiple datasets, we adopt a framework similar to DS-NER but additionally leverage ChatGPT to obtain high-quality phrases in the training. Through extensive experiments conducted on 10 benchmark datasets, we demonstrate the versatility and effectiveness of DMNER.

cs.CL↗

arXiv2023

GoSum: Extractive Summarization of Long Documents by Reinforcement Learning and Graph Organized discourse state

Extracting summaries from long documents can be regarded as sentence classification using the structural information of the documents. How to use such structural information to summarize a document is challenging. In this paper, we propose GoSum, a novel graph and reinforcement learning based extractive model for long-paper summarization. In particular, GoSum encodes sentence states in reinforcement learning by building a heterogeneous graph for each input document at different discourse levels. An edge in the graph reflects the discourse hierarchy of a document for restraining the semantic drifts across section boundaries. We evaluate GoSum on two datasets of scientific articles summarization: PubMed and arXiv. The experimental results have demonstrated that GoSum achieve state-of-the-art results compared with strong baselines of both extractive and abstractive models. The ablation studies further validate that the performance of our GoSum benefits from the use of discourse information.

cs.CL↗

arXiv2020

THCluster: herb supplements categorization for precision traditional Chinese medicine

There has been a continuing demand for traditional and complementary medicine worldwide. A fundamental and important topic in Traditional Chinese Medicine (TCM) is to optimize the prescription and to detect herb regularities from TCM data. In this paper, we propose a novel clustering model to solve this general problem of herb categorization, a pivotal task of prescription optimization and herb regularities. The model utilizes Random Walks method, Bayesian rules and Expectation Maximization(EM) models to complete a clustering analysis effectively on a heterogeneous information network. We performed extensive experiments on the real-world datasets and compared our method with other algorithms and experts. Experimental results have demonstrated the effectiveness of the proposed model for discovering useful categorization of herbs and its potential clinical manifestations.

q-bio.QM↗

arXiv2019

AttentionXML: Label Tree-based Attention-Aware Deep Model for High-Performance Extreme Multi-Label Text Classification

Extreme multi-label text classification (XMTC) is an important problem in the era of big data, for tagging a given text with the most relevant multiple labels from an extremely large-scale label set. XMTC can be found in many applications, such as item categorization, web page tagging, and news annotation. Traditionally most methods used bag-of-words (BOW) as inputs, ignoring word context as well as deep semantic information. Recent attempts to overcome the problems of BOW by deep learning still suffer from 1) failing to capture the important subtext for each label and 2) lack of scalability against the huge number of labels. We propose a new label tree-based deep learning model for XMTC, called AttentionXML, with two unique features: 1) a multi-label attention mechanism with raw text as input, which allows to capture the most relevant part of text to each label; and 2) a shallow and wide probabilistic label tree (PLT), which allows to handle millions of labels, especially for "tail labels". We empirically compared the performance of AttentionXML with those of eight state-of-the-art methods over six benchmark datasets, including Amazon-3M with around 3 million labels. AttentionXML outperformed all competing methods under all experimental settings. Experimental results also show that AttentionXML achieved the best performance against tail labels among label tree-based methods. The code and datasets are available at http://github.com/yourh/AttentionXML .

cs.CL↗

arXiv2019

HAXMLNet: Hierarchical Attention Network for Extreme Multi-Label Text Classification

Extreme multi-label text classification (XMTC) addresses the problem of tagging each text with the most relevant labels from an extreme-scale label set. Traditional methods use bag-of-words (BOW) representations without context information as their features. The state-ot-the-art deep learning-based method, AttentionXML, which uses a recurrent neural network (RNN) and the multi-label attention, can hardly deal with extreme-scale (hundreds of thousands labels) problem. To address this, we propose our HAXMLNet, which uses an efficient and effective hierarchical structure with the multi-label attention. Experimental results show that HAXMLNet reaches a competitive performance with other state-of-the-art methods.

cs.IR↗

arXiv2015

Design Issues of JPQ: a Pattern-based Query Language for Document Databases

Document databases are becoming popular, but how to present complex document query to obtain useful information from the document remains an important topic to study. In this paper, we describe the design issues of a pattern-based document database query language named JPQ. JPQ uses various expressive patterns to extract and construct document fragments following a JSON-like document data model. It adopts tree-like extraction patterns with a coherent pattern composition mechanism to extract data elements from hierarchically structured documents and maintain the logical relationships among the elements. Based on these relationships, JPQ deploys a deductive mechanism to declaratively specify the data transformation requests and considers also data filtering on hierarchical data structure. We use various examples to show the features of the language and to demonstrate its expressiveness and declarativeness in presenting complex document queries.

cs.DB↗

arXiv2014

XTQ: A Declarative Functional XML Query Language

Various query languages have been proposed to extract and restructure information in XML documents. These languages, usually claiming to be declarative, mainly consider the conjunctive relationships among data elements. In order to present the operations where the hierarchical and the disjunctive relationships need to be considered, such as restructuring hierarchy and handling heterogeneity, the programs in these languages often exhibit a procedural style and thus the declarativeness in them is not so prominent as in conventional query languages like SQL. In this paper, we propose a declarative pattern-based functional XML query language named XML Tree Query (XTQ). XTQ adopts expressive composite patterns to present data extraction, meanwhile establishing the conjunctive, the disjunctive and the hierarchical relationships among data elements. It uses the matching terms, a composite structure of the variables bound to the matched data elements, to present a global sketch of the extracted data, and develops a deductive restructuring mechanism of matching terms to indicate data transformation, especially for restructuring hierarchy and handling heterogeneity. Based on matching terms, XTQ employs a coherent approach to function declaration and invocation to consistently extract and construct composite data structure, which integrates features of conventional functional languages and pattern-based query languages. Additionally, XTQ also supports data filtering on composite data structure such as hierarchical data, which is seldom deliberately considered in other studies. We demonstrate with various examples that XTQ can declaratively present complex XML queries which are common in practice.

cs.PL↗