SearcharxivSearch

arXiv subjects

Shannon M. Wheeler

Publications and source records attributed to Shannon M. Wheeler.

2 recordsLinked to original sources

Vortex Velocity Probability Distributions in Phase Ordering Kinetics

The calculation of the point vortex velocity probability distribution function (vvpdf) is extended to a larger class of systems beyond the nonconserved TDGL model treated earlier. The range is extended to include certain anisotropic models and the conserved order parameter case. The vvpdf still satisfies scaling with large velocity tails as for the nonconserved isotropic case. It is shown that the average vortex speed can be self-consistently expressed in terms of correlation functions associated with a Gaussian auxiliary field. In the conserved order parameter case the average vortex speed decays as $t^{-1}$ compared to the $t^{-1/2}$ decay for the nonconserved case.

cond-mat.soft

MCAMC: An Advanced Algorithm for Kinetic Monte Carlo Simulations: from Magnetization Switching to Protein Folding

We present the Monte Carlo with Absorbing Markov Chains (MCAMC) method for extremely long kinetic Monte Carlo simulations. The MCAMC algorithm does not modify the system dynamics. It is extremely useful for models with discrete state spaces when low-temperature simulations are desired. To illustrate the strengths and limitations of this algorithm we introduce a simple model involving random walkers on an energy landscape. This simple model has some of the characteristics of protein folding and could also be experimentally realizable in domain motion in nanoscale magnets. We find that even the simplest MCAMC algorithm can speed up calculations by many orders of magnitude. More complicated MCAMC simulations can gain further increases in speed by orders of magnitude.

cond-mat.mtrl-sci