arXiv subjects

Shen Zhao

Publications and source records attributed to Shen Zhao.

At least 19 recordsLinked to original sources

arXiv2026

TEAMS: Text-prompted spatiotEmporal dual-heAd Mamba Snake

Deep snake is a promising family of instance segmentation methods that accurately predicts object-level contours, thereby overcoming common pixel-level misclassification issues such as mask cavities and jagged edges in semantic segmentation approaches. However, existing deep snake methods face challenges in handling complex morphological variations, accurately capturing fine-grained organ details, and correcting base detection errors. To mitigate these limitations, we propose a cohesive Text-prompted spatiotEmporal dual-heAd Mamba Snake (TEAMS), a novel vision-language Mamba snake framework with three key innovations: (1) A Spatiotemporal Snake Evolution Strategy (SSES) is introduced to tackle complex morphological variations by capturing bidirectional spatial dependencies along the snake contour and temporal dynamics across evolution steps in a state space model. (2) A Contour Morphology-Aware Mamba (CMAM) is proposed to quantify local contour morphologies to modulate the structured attention mask in the Mamba2 SSD dual form, which extends Mamba's capability to perceive the relative importance of its input sequence elements for better delineation of fine-grained organ details. (3) A Text-prompted Collaborative Dual-Head Snake (TCDHS) is designed to incorporate cues from textual prompts and transfer the evolved contour information to the base detection head, which enhances the deep snake workflow and mitigates wrong detections. Comprehensive evaluations on five datasets covering different organs and imaging modalities demonstrate that TEAMS outperforms existing semantic and deep snake segmentation methods (e.g., relative mDice/mBF improvements of 6.9%/9.1% in a spinal dataset), underscoring its potential as a reliable tool across diverse medical image segmentation scenarios.

cs.CV↗

arXiv2026

The Ponderomotive Effects of Narrow-band, Superconducting Resonators in Open and Closed Loop

In this work, we present measurements of ponderomotive instabilities in narrow-band, coaxial resonators in open and closed control loop systems. We show an analytical scheme we will use in future studies to examine the dependency of open loop stability on mechanical parameters. Analytical and simulation models are used to predict the onset of the oscillatory instability in half wave resonators with active disturbance rejection control for amplitude and phase stabilization. We demonstrate that for high amplitude controller bandwidths, ponderomotive oscillations can couple with the controller frequency response via higher harmonics and lower the threshold for the oscillatory instability. We reaffirm the superiority of in-phase/quadrature $(I/Q)$ component control in regards to preventing the oscillatory instability, and show how the phase controller can amplify the crosstalk of disturbances in amplitude and phase control. In cases with large disturbances, this effect can lead to instabilities not present in $I/Q$ control.

physics.acc-ph↗

arXiv2026

T-DuMpRa: Teacher-guided Dual-path Multi-prototype Retrieval Augmented framework for fine-grained medical image classification

Fine-grained medical image classification is challenged by subtle inter-class variations and visually ambiguous cases, where confidence estimates often exhibit uncertainty rather than being overconfident. In such scenarios, purely discriminative classifiers may achieve high overall accuracy yet still fail to distinguish between highly similar categories, leading to miscalibrated predictions. We propose T-DuMpRa, a teacher-guided dual-path multi-prototype retrieval-augmented framework, where discriminative classification and multi-prototype retrieval jointly drive both training and prediction. During training, we jointly optimize cross-entropy and supervised contrastive objectives to learn a cosine-compatible embedding geometry for reliable prototype matching. We further employ an exponential moving average (EMA) teacher to obtain smoother representations and build a multi-prototype memory bank by clustering teacher embeddings in the teacher embedding space. Our framework is plug-and-play: it can be easily integrated into existing classification models by constructing a compact prototype bank, thereby improving performance on visually ambiguous cases. At inference, we combine the classifier's predicted distribution with a similarity-based distribution computed via cosine matching to prototypes, and apply a conservative confidence-gated fusion that activates retrieval only when the classifier's prediction is uncertain and the retrieval evidence is decisive and conflicting, otherwise keeping confident predictions unchanged. On HAM10000 and ISIC2019, our method yields 0.68%-0.21% and 0.44%-2.69% improvements on 5 different backbones. And visualization analysis proves our model can enhance the model's ability to handle visually ambiguous cases.

cs.AI↗

arXiv2026

SGP-SAM: Self-Gated Prompting for Transferring 3D Segment Anything Models to Lesion Segmentation

Large segmentation foundation models such as the Segment Anything Model (SAM) have reshaped promptable segmentation in natural images, and recent efforts have extended these models to medical images and volumetric settings. However, directly transferring a 3D SAM-style model to lesion segmentation remains challenging due to (i) weak spatial representational capacity for small, irregular targets in intermediate features, and (ii) extreme foreground-background imbalance in 3D volumes.We propose SGP-SAM, a self-gated prompting framework for efficient and effective transfer to 3D lesion segmentation. Our key component, the Self-Gated Prompting Module (SGPM), performs conditional multi-scale spatial enhancement: a lightweight multi-channel gating unit predicts whether the current features require additional multi-scale fusion, and only then activates a Multi-Scale Feature Fusion Block to enrich spatial context. To further address small-lesion learning, we design a Zoom Loss that up-weights lesion-focused supervision by combining Dice and a voxel-balanced focal term.Experiments on MSD Liver Tumor and MSD Brain Tumor (enhancing tumor) show consistent gains over strong transfer baselines based on SAM-Med3D. On MSD Liver Tumor, SGP-SAM improves mDice by 7.3% over fine-tuning.

cs.CV↗

arXiv2026

A1: A Fully Transparent Open-Source, Adaptive and Efficient Truncated Vision-Language-Action Model

Vision-Language-Action (VLA) models have emerged as a powerful paradigm for open-world robot manipulation, but their practical deployment is often constrained by cost: billion-scale VLM backbones and iterative diffusion/flow-based action heads incur high latency and compute, making real-time control expensive on commodity hardware. We present A1, a fully open-source and transparent VLA framework designed for low-cost, high-throughput inference without sacrificing manipulation success; Our approach leverages pretrained VLMs that provide implicit affordance priors for action generation. We release the full training stack (training code, data/data-processing pipeline, intermediate checkpoints, and evaluation scripts) to enable end-to-end reproducibility. Beyond optimizing the VLM alone, A1 targets the full inference pipeline by introducing a budget-aware adaptive inference scheme that jointly accelerates the backbone and the action head. Specifically, we monitor action consistency across intermediate VLM layers to trigger early termination, and propose Inter-Layer Truncated Flow Matching that warm-starts denoising across layers, enabling accurate actions with substantially fewer effective denoising iterations. Across simulation benchmarks (LIBERO, VLABench) and real robots (Franka, AgiBot), A1 achieves state-of-the-art success rates while significantly reducing inference cost (e.g., up to 72% lower per-episode latency for flow-matching inference and up to 76.6% backbone computation reduction with minor performance degradation). On RoboChallenge, A1 achieves an average success rate of 29.00%, outperforming baselines including pi0(28.33%), X-VLA (21.33%), and RDT-1B (15.00%).

cs.RO↗

arXiv2025

EchoVLA: Robotic Vision-Language-Action Model with Synergistic Declarative Memory for Mobile Manipulation

Recent progress in Vision-Language-Action (VLA) models has enabled embodied agents to interpret multimodal instructions and perform complex tasks. However, existing VLAs are mostly confined to short-horizon, table-top manipulation, lacking the memory and reasoning capability required for mobile manipulation, where agents must coordinate navigation and manipulation under changing spatial contexts. In this work, we present EchoVLA, a memory-aware VLA model for mobile manipulation. EchoVLA incorporates a synergistic declarative memory inspired by the human brain, consisting of a scene memory that maintains a collection of spatial-semantic maps and an episodic memory that stores task-level experiences with multimodal contextual features. The two memories are individually stored, updated, and retrieved based on current observations, task history, and instructions, and their retrieved representations are fused via coarse- and fine-grained attention to guide base-arm diffusion policies. To support large-scale training, we further introduce MoMani, an automated benchmark that generates expert-level trajectories through multimodal large language model (MLLM)-guided planning and feedback-driven refinement, supplemented with real-robot demonstrations. Comprehensive simulated and real-world results demonstrate that EchoVLA substantially improves overall performance, e.g., it achieves the highest success rates of 0.52 on manipulation/navigation tasks and 0.31 on mobile manipulation tasks in simulation, exceeding the strong baseline $\pi_{0.5}$ by +0.20 and +0.11, respectively.

cs.RO↗

arXiv2025

Unified Medical Image Segmentation with State Space Modeling Snake

Unified Medical Image Segmentation (UMIS) is critical for comprehensive anatomical assessment but faces challenges due to multi-scale structural heterogeneity. Conventional pixel-based approaches, lacking object-level anatomical insight and inter-organ relational modeling, struggle with morphological complexity and feature conflicts, limiting their efficacy in UMIS. We propose Mamba Snake, a novel deep snake framework enhanced by state space modeling for UMIS. Mamba Snake frames multi-contour evolution as a hierarchical state space atlas, effectively modeling macroscopic inter-organ topological relationships and microscopic contour refinements. We introduce a snake-specific vision state space module, the Mamba Evolution Block (MEB), which leverages effective spatiotemporal information aggregation for adaptive refinement of complex morphologies. Energy map shape priors further ensure robust long-range contour evolution in heterogeneous data. Additionally, a dual-classification synergy mechanism is incorporated to concurrently optimize detection and segmentation, mitigating under-segmentation of microstructures in UMIS. Extensive evaluations across five clinical datasets reveal Mamba Snake's superior performance, with an average Dice improvement of 3\% over state-of-the-art methods.

cs.CV↗

arXiv2025

PathGene: Benchmarking Driver Gene Mutations and Exon Prediction Using Multicenter Lung Cancer Histopathology Image Dataset

Accurately predicting gene mutations, mutation subtypes and their exons in lung cancer is critical for personalized treatment planning and prognostic assessment. Faced with regional disparities in medical resources and the high cost of genomic assays, using artificial intelligence to infer these mutations and exon variants from routine histopathology images could greatly facilitate precision therapy. Although some prior studies have shown that deep learning can accelerate the prediction of key gene mutations from lung cancer pathology slides, their performance remains suboptimal and has so far been limited mainly to early screening tasks. To address these limitations, we have assembled PathGene, which comprises histopathology images paired with next-generation sequencing reports from 1,576 patients at the Second Xiangya Hospital, Central South University, and 448 TCGA-LUAD patients. This multi-center dataset links whole-slide images to driver gene mutation status, mutation subtypes, exon, and tumor mutational burden (TMB) status, with the goal of leveraging pathology images to predict mutations, subtypes, exon locations, and TMB for early genetic screening and to advance precision oncology. Unlike existing datasets, we provide molecular-level information related to histopathology images in PathGene to facilitate the development of biomarker prediction models. We benchmarked 11 multiple-instance learning methods on PathGene for mutation, subtype, exon, and TMB prediction tasks. These experimental methods provide valuable alternatives for early genetic screening of lung cancer patients and assisting clinicians to quickly develop personalized precision targeted treatment plans for patients. Code and data are available at https://github.com/panliangrui/NIPS2025/.

q-bio.GN↗

arXiv2025

Control of atomic reconstruction and quasi-1D excitons in strain-engineered moir\'e heterostructures

In two-dimensional nearly commensurate heterostructures, strain plays a critical role in shaping electronic behavior. While previous studies have focused on random strain introduced during fabrication, achieving controlled structural design has remained challenging. Here, we demonstrate the deterministic creation of one-dimensional arrays from initially zero-dimensional triangular moir\'e patterns in MoSe$_2$-WSe$_2$ heterobilayers. This transformation, driven by the interplay of uniaxial strain and atomic reconstruction, results in one-dimensional confinement of interlayer excitons within domain walls, exhibiting near-unity linearly polarized emission related to the confinement-induced symmetry breaking. The width of the domain walls--and consequently the degree of exciton confinement--can be precisely tuned by the interlayer twist angle. By applying out-of-plane electric field, the confined excitons exhibit energy shifts exceeding 100~meV and changes in the fine-structure splitting by up to a factor of two. Our work demonstrates the potential of strain engineering for constructing designer moir\'e systems with programmable quantum properties, paving the way for future optoelectronic applications.

cond-mat.mes-hall↗

arXiv2025

GAMED-Snake: Gradient-aware Adaptive Momentum Evolution Deep Snake Model for Multi-organ Segmentation

Multi-organ segmentation is a critical yet challenging task due to complex anatomical backgrounds, blurred boundaries, and diverse morphologies. This study introduces the Gradient-aware Adaptive Momentum Evolution Deep Snake (GAMED-Snake) model, which establishes a novel paradigm for contour-based segmentation by integrating gradient-based learning with adaptive momentum evolution mechanisms. The GAMED-Snake model incorporates three major innovations: First, the Distance Energy Map Prior (DEMP) generates a pixel-level force field that effectively attracts contour points towards the true boundaries, even in scenarios with complex backgrounds and blurred edges. Second, the Differential Convolution Inception Module (DCIM) precisely extracts comprehensive energy gradients, significantly enhancing segmentation accuracy. Third, the Adaptive Momentum Evolution Mechanism (AMEM) employs cross-attention to establish dynamic features across different iterations of evolution, enabling precise boundary alignment for diverse morphologies. Experimental results on four challenging multi-organ segmentation datasets demonstrate that GAMED-Snake improves the mDice metric by approximately 2% compared to state-of-the-art methods. Code will be available at https://github.com/SYSUzrc/GAMED-Snake.

cs.CV↗

arXiv2025

Deterministic and Scalable Quantum Light Generation in DNA Origami-Programmed Organic Molecule-MoS$_2$ Monolayer Hybrids

The functionalization of atomically-thin transition metal dichalcogenides (TMDs) with organic molecules is a promising approach for realizing nanoscale optoelectronic devices with tailored functionalities, such as quantum light generation or p-n junctions. However, achieving precise control over the molecules' positioning on the 2D material remains a significant challenge. Here, we overcome the limitations of solution- and vapor-deposition methods and use a DNA origami placement technique to spatially arrange thiol molecules on a chip surface at the single-molecule level with high assembly yields. We successfully integrated MoS$_2$ monolayers with micron-scale thiol-origami patterns, achieving single-photon emission from thiol-induced localized excitons in MoS$_2$. Our work lays a foundation for the chemical control of quantum emitters in atomically-thin semiconductors and enables the design and production of ultracompact 2D devices for quantum technologies.

cond-mat.mes-hall↗

arXiv2024

AnomalyControl: Learning Cross-modal Semantic Features for Controllable Anomaly Synthesis

Anomaly synthesis is a crucial approach to augment abnormal data for advancing anomaly inspection. Based on the knowledge from the large-scale pre-training, existing text-to-image anomaly synthesis methods predominantly focus on textual information or coarse-aligned visual features to guide the entire generation process. However, these methods often lack sufficient descriptors to capture the complicated characteristics of realistic anomalies (e.g., the fine-grained visual pattern of anomalies), limiting the realism and generalization of the generation process. To this end, we propose a novel anomaly synthesis framework called AnomalyControl to learn cross-modal semantic features as guidance signals, which could encode the generalized anomaly cues from text-image reference prompts and improve the realism of synthesized abnormal samples. Specifically, AnomalyControl adopts a flexible and non-matching prompt pair (i.e., a text-image reference prompt and a targeted text prompt), where a Cross-modal Semantic Modeling (CSM) module is designed to extract cross-modal semantic features from the textual and visual descriptors. Then, an Anomaly-Semantic Enhanced Attention (ASEA) mechanism is formulated to allow CSM to focus on the specific visual patterns of the anomaly, thus enhancing the realism and contextual relevance of the generated anomaly features. Treating cross-modal semantic features as the prior, a Semantic Guided Adapter (SGA) is designed to encode effective guidance signals for the adequate and controllable synthesis process. Extensive experiments indicate that AnomalyControl can achieve state-of-the-art results in anomaly synthesis compared with existing methods while exhibiting superior performance for downstream tasks.

cs.CV↗

arXiv2024

VidMan: Exploiting Implicit Dynamics from Video Diffusion Model for Effective Robot Manipulation

Recent advancements utilizing large-scale video data for learning video generation models demonstrate significant potential in understanding complex physical dynamics. It suggests the feasibility of leveraging diverse robot trajectory data to develop a unified, dynamics-aware model to enhance robot manipulation. However, given the relatively small amount of available robot data, directly fitting data without considering the relationship between visual observations and actions could lead to suboptimal data utilization. To this end, we propose VidMan (Video Diffusion for Robot Manipulation), a novel framework that employs a two-stage training mechanism inspired by dual-process theory from neuroscience to enhance stability and improve data utilization efficiency. Specifically, in the first stage, VidMan is pre-trained on the Open X-Embodiment dataset (OXE) for predicting future visual trajectories in a video denoising diffusion manner, enabling the model to develop a long horizontal awareness of the environment's dynamics. In the second stage, a flexible yet effective layer-wise self-attention adapter is introduced to transform VidMan into an efficient inverse dynamics model that predicts action modulated by the implicit dynamics knowledge via parameter sharing. Our VidMan framework outperforms state-of-the-art baseline model GR-1 on the CALVIN benchmark, achieving a 11.7% relative improvement, and demonstrates over 9% precision gains on the OXE small-scale dataset. These results provide compelling evidence that world models can significantly enhance the precision of robot action prediction. Codes and models will be public.

cs.CV↗

arXiv2024

Whole Heart Perfusion with High-Multiband Simultaneous Multislice Imaging via Linear Phase Modulated Extended Field of View (SMILE)

Purpose: To develop a simultaneous multislice (SMS) first-pass perfusion technique that can achieve whole heart coverage with high multi-band factors, while avoiding the issue of slice leakage. Methods: The proposed Simultaneous Multislice Imaging via Linear phase modulated Extended field of view (SMILE) treats the SMS acquisition and reconstruction within an extended field of view framework, allowing arbitrarily under-sampling of phase encoding lines of the extended k-space matrix and enabling the direct application of 2D parallel imaging reconstruction techniques. We presented a theoretical framework that offers insights into the performance of SMILE. We performed retrospective comparison on 28 subjects and prospective perfusion experiments on 43 patients undergoing routine clinical CMR studies with SMILE at multiband (MB) factors of 3-5, with a net acceleration rate ($R$) of 8 and 10 respectively, and compared SMILE to conventional SMS techniques using standard FOV 2D CAIPI acquisition and standard 2D slice separation techniques including split-slice GRAPPA and ROCK-SPIRiT. Results: Retrospective studies demonstrated 5.2 to 8.0 dB improvement in signal to error ratio (SER) of SMILE over CAIPI perfusion. Prospective studies showed good image quality with grades of 4.1 $\pm$ 0.7 for MB = 3, $R$ = 8 and 3.5 $\pm$ 1.0 for MB = 5, $R$ = 10. (5-point Likert Scale) Conclusion: The theoretical derivation and experimental results validate the SMILE's improved performance at high acceleration and MB as compared to the existing 2D CAIPI SMS acquisition and reconstruction techniques for first-pass myocardial perfusion imaging.

eess.SP↗

arXiv2024

A Population-to-individual Tuning Framework for Adapting Pretrained LM to On-device User Intent Prediction

Mobile devices, especially smartphones, can support rich functions and have developed into indispensable tools in daily life. With the rise of generative AI services, smartphones can potentially transform into personalized assistants, anticipating user needs and scheduling services accordingly. Predicting user intents on smartphones, and reflecting anticipated activities based on past interactions and context, remains a pivotal step towards this vision. Existing research predominantly focuses on specific domains, neglecting the challenge of modeling diverse event sequences across dynamic contexts. Leveraging pre-trained language models (PLMs) offers a promising avenue, yet adapting PLMs to on-device user intent prediction presents significant challenges. To address these challenges, we propose PITuning, a Population-to-Individual Tuning framework. PITuning enhances common pattern extraction through dynamic event-to-intent transition modeling and addresses long-tailed preferences via adaptive unlearning strategies. Experimental results on real-world datasets demonstrate PITuning's superior intent prediction performance, highlighting its ability to capture long-tailed preferences and its practicality for on-device prediction scenarios.

cs.LG↗

arXiv2024

Predicting Genetic Mutation from Whole Slide Images via Biomedical-Linguistic Knowledge Enhanced Multi-label Classification

Predicting genetic mutations from whole slide images is indispensable for cancer diagnosis. However, existing work training multiple binary classification models faces two challenges: (a) Training multiple binary classifiers is inefficient and would inevitably lead to a class imbalance problem. (b) The biological relationships among genes are overlooked, which limits the prediction performance. To tackle these challenges, we innovatively design a Biological-knowledge enhanced PathGenomic multi-label Transformer to improve genetic mutation prediction performances. BPGT first establishes a novel gene encoder that constructs gene priors by two carefully designed modules: (a) A gene graph whose node features are the genes' linguistic descriptions and the cancer phenotype, with edges modeled by genes' pathway associations and mutation consistencies. (b) A knowledge association module that fuses linguistic and biomedical knowledge into gene priors by transformer-based graph representation learning, capturing the intrinsic relationships between different genes' mutations. BPGT then designs a label decoder that finally performs genetic mutation prediction by two tailored modules: (a) A modality fusion module that firstly fuses the gene priors with critical regions in WSIs and obtains gene-wise mutation logits. (b) A comparative multi-label loss that emphasizes the inherent comparisons among mutation status to enhance the discrimination capabilities. Sufficient experiments on The Cancer Genome Atlas benchmark demonstrate that BPGT outperforms the state-of-the-art.

cs.CV↗

arXiv2024

VG4D: Vision-Language Model Goes 4D Video Recognition

Understanding the real world through point cloud video is a crucial aspect of robotics and autonomous driving systems. However, prevailing methods for 4D point cloud recognition have limitations due to sensor resolution, which leads to a lack of detailed information. Recent advances have shown that Vision-Language Models (VLM) pre-trained on web-scale text-image datasets can learn fine-grained visual concepts that can be transferred to various downstream tasks. However, effectively integrating VLM into the domain of 4D point clouds remains an unresolved problem. In this work, we propose the Vision-Language Models Goes 4D (VG4D) framework to transfer VLM knowledge from visual-text pre-trained models to a 4D point cloud network. Our approach involves aligning the 4D encoder's representation with a VLM to learn a shared visual and text space from training on large-scale image-text pairs. By transferring the knowledge of the VLM to the 4D encoder and combining the VLM, our VG4D achieves improved recognition performance. To enhance the 4D encoder, we modernize the classic dynamic point cloud backbone and propose an improved version of PSTNet, im-PSTNet, which can efficiently model point cloud videos. Experiments demonstrate that our method achieves state-of-the-art performance for action recognition on both the NTU RGB+D 60 dataset and the NTU RGB+D 120 dataset. Code is available at \url{https://github.com/Shark0-0/VG4D}.

cs.CV↗

arXiv2024

Hybrid moir\'e excitons and trions in twisted MoTe$_2$-MoSe$_2$ heterobilayers

We report experimental and theoretical studies of MoTe$_2$-MoSe$_2$ heterobilayers with rigid moir\'e superlattices controlled by the twist angle. Using an effective continuum model that combines resonant interlayer electron tunneling with stacking-dependent moir\'e potentials, we identify the nature of moir\'e excitons and the dependence of their energies, oscillator strengths and Land\'e $g$-factors on the twist angle. Within the same framework, we interpret distinct signatures of bound complexes among electrons and moir\'e excitons in nearly collinear heterostacks. Our work provides fundamental understanding of hybrid moir\'e excitons and trions in MoTe$_2$-MoSe$_2$ heterobilayers, and establishes the material system as a prime candidate for optical studies of correlated phenomena in moir\'e lattices.

cond-mat.mes-hall↗