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Sheng Zhang

Publications and source records attributed to Sheng Zhang.

At least 163 records · Page 9Linked to original sources
arXiv2024

Aircraft Landing Time Prediction with Deep Learning on Trajectory Images

Aircraft landing time (ALT) prediction is crucial for air traffic management, especially for arrival aircraft sequencing on the runway. In this study, a trajectory image-based deep learning method is proposed to predict ALTs for the aircraft entering the research airspace that covers the Terminal Maneuvering Area (TMA). Specifically, the trajectories of all airborne arrival aircraft within the temporal capture window are used to generate an image with the target aircraft trajectory labeled as red and all background aircraft trajectory labeled as blue. The trajectory images contain various information, including the aircraft position, speed, heading, relative distances, and arrival traffic flows. It enables us to use state-of-the-art deep convolution neural networks for ALT modeling. We also use real-time runway usage obtained from the trajectory data and the external information such as aircraft types and weather conditions as additional inputs. Moreover, a convolution neural network (CNN) based module is designed for automatic holding-related featurizing, which takes the trajectory images, the leading aircraft holding status, and their time and speed gap at the research airspace boundary as its inputs. Its output is further fed into the final end-to-end ALT prediction. The proposed ALT prediction approach is applied to Singapore Changi Airport (ICAO Code: WSSS) using one-month Automatic Dependent Surveillance-Broadcast (ADS-B) data from November 1 to November 30, 2022. Experimental results show that by integrating the holding featurization, we can reduce the mean absolute error (MAE) from 82.23 seconds to 43.96 seconds, and achieve an average accuracy of 96.1\%, with 79.4\% of the predictions errors being less than 60 seconds.

cs.LG↗
arXiv2023

Towards Realistic Zero-Shot Classification via Self Structural Semantic Alignment

Large-scale pre-trained Vision Language Models (VLMs) have proven effective for zero-shot classification. Despite the success, most traditional VLMs-based methods are restricted by the assumption of partial source supervision or ideal vocabularies, which rarely satisfy the open-world scenario. In this paper, we aim at a more challenging setting, Realistic Zero-Shot Classification, which assumes no annotation but instead a broad vocabulary. To address this challenge, we propose the Self Structural Semantic Alignment (S^3A) framework, which extracts the structural semantic information from unlabeled data while simultaneously self-learning. Our S^3A framework adopts a unique Cluster-Vote-Prompt-Realign (CVPR) algorithm, which iteratively groups unlabeled data to derive structural semantics for pseudo-supervision. Our CVPR process includes iterative clustering on images, voting within each cluster to identify initial class candidates from the vocabulary, generating discriminative prompts with large language models to discern confusing candidates, and realigning images and the vocabulary as structural semantic alignment. Finally, we propose to self-learn the CLIP image encoder with both individual and structural semantic alignment through a teacher-student learning strategy. Our comprehensive experiments across various generic and fine-grained benchmarks demonstrate that the S^3A method offers substantial improvements over existing VLMs-based approaches, achieving a more than 15% accuracy improvement over CLIP on average. Our codes, models, and prompts are publicly released at https://github.com/sheng-eatamath/S3A.

cs.CV↗
arXiv2023

VASP2KP: kp models and Lande g-factors from ab initio calculations

The $k\cdot p$ method is significant in condensed matter physics for the compact and analytical Hamiltonian. In the presence of magnetic field, it is described by the effective Zeeman's coupling Hamiltonian with Landé $ g $-factors. Here, we develop an open-source package VASP2KP (including two parts: vasp2mat and mat2kp) to compute $k\cdot p$ parameters and Landé $g$-factors directly from the wavefunctions provided by the density functional theory (DFT) as implemented in Vienna ab initio Simulation Package (VASP). First, we develop a VASP patch vasp2mat to compute matrix representations of the generalized momentum operator $ \mathbf{\hatπ}=\mathbf{\hat{p}}+\frac{1}{2mc^2}\left(\mathbf{\hat{s}}\times\nabla V(\mathbf{r})\right) $, spin operator $\mathbf{\hat{s}}$, time reversal operator $\hat{T}$ and crystalline symmetry operators $\hat{R}$ on the DFT wavefunctions. Second, we develop a python code mat2kp to obtain the unitary transformation $U$ that rotates the degenerate DFT basis towards the standard basis, and then automatically compute the $k\cdot p$ parameters and $g$-factors. The theory and the methodology behind VASP2KP are described in detail. The matrix elements of the operators are derived comprehensively and computed correctly within the projector augmented wave method. We apply this package to some materials, e.g., Bi$_2$Se$_3$, Na$_3$Bi, Te, InAs and 1H-TMD monolayers. The obtained effective model's dispersions are in good agreement with the DFT data around the specific wave vector, and the $g$-factors are consistent with experimental data. The VASP2KP package is available at https://github.com/zjwang11/VASP2KP.

cond-mat.mtrl-sci↗
arXiv2023

Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine

Generalist foundation models such as GPT-4 have displayed surprising capabilities in a wide variety of domains and tasks. Yet, there is a prevalent assumption that they cannot match specialist capabilities of fine-tuned models. For example, most explorations to date on medical competency benchmarks have leveraged domain-specific training, as exemplified by efforts on BioGPT and Med-PaLM. We build on a prior study of GPT-4's capabilities on medical challenge benchmarks in the absence of special training. Rather than using simple prompting to highlight the model's out-of-the-box capabilities, we perform a systematic exploration of prompt engineering. We find that prompting innovation can unlock deeper specialist capabilities and show that GPT-4 easily tops prior leading results for medical benchmarks. The prompting methods we explore are general purpose, and make no specific use of domain expertise, removing the need for expert-curated content. Our experimental design carefully controls for overfitting during the prompt engineering process. We introduce Medprompt, based on a composition of several prompting strategies. With Medprompt, GPT-4 achieves state-of-the-art results on all nine of the benchmark datasets in the MultiMedQA suite. The method outperforms leading specialist models such as Med-PaLM 2 by a significant margin with an order of magnitude fewer calls to the model. Steering GPT-4 with Medprompt achieves a 27% reduction in error rate on the MedQA dataset over the best methods to date achieved with specialist models and surpasses a score of 90% for the first time. Beyond medical problems, we show the power of Medprompt to generalize to other domains and provide evidence for the broad applicability of the approach via studies of the strategy on exams in electrical engineering, machine learning, philosophy, accounting, law, nursing, and clinical psychology.

cs.CL↗
arXiv2023

Machine learning force-field models for metallic spin glass

Metallic spin glass systems, such as dilute magnetic alloys, are characterized by randomly distributed local moments coupled to each other through a long-range electron-mediated effective interaction. We present a scalable machine learning (ML) framework for dynamical simulations of metallic spin glasses. A Behler-Parrinello type neural-network model, based on the principle of locality, is developed to accurately and efficiently predict electron-induced local magnetic fields that drive the spin dynamics. A crucial component of the ML model is a proper symmetry-invariant representation of local magnetic environment which is direct input to the neural net. We develop such a magnetic descriptor by incorporating the spin degrees of freedom into the atom-centered symmetry function methods which are widely used in ML force-field models for quantum molecular dynamics. We apply our approach to study the relaxation dynamics of an amorphous generalization of the s-d model. Our work highlights the promising potential of ML models for large-scale dynamical modeling of itinerant magnets with quenched disorder.

cond-mat.dis-nn↗
arXiv2023

Dynamic Multimodal Information Bottleneck for Multimodality Classification

Effectively leveraging multimodal data such as various images, laboratory tests and clinical information is gaining traction in a variety of AI-based medical diagnosis and prognosis tasks. Most existing multi-modal techniques only focus on enhancing their performance by leveraging the differences or shared features from various modalities and fusing feature across different modalities. These approaches are generally not optimal for clinical settings, which pose the additional challenges of limited training data, as well as being rife with redundant data or noisy modality channels, leading to subpar performance. To address this gap, we study the robustness of existing methods to data redundancy and noise and propose a generalized dynamic multimodal information bottleneck framework for attaining a robust fused feature representation. Specifically, our information bottleneck module serves to filter out the task-irrelevant information and noises in the fused feature, and we further introduce a sufficiency loss to prevent dropping of task-relevant information, thus explicitly preserving the sufficiency of prediction information in the distilled feature. We validate our model on an in-house and a public COVID19 dataset for mortality prediction as well as two public biomedical datasets for diagnostic tasks. Extensive experiments show that our method surpasses the state-of-the-art and is significantly more robust, being the only method to remain performance when large-scale noisy channels exist. Our code is publicly available at https://github.com/ayanglab/DMIB.

eess.IV↗
arXiv2023

Flexible generation of structured terahertz fields via programmable exchange-biased spintronic emitters

Structured light, particularly in the terahertz frequency range, holds considerable potential for a diverse range of applications. However, the generation and control of structured terahertz radiation pose major challenges. In this work, we demonstrate a novel programmable spintronic emitter that can flexibly generate a variety of structured terahertz waves. This is achieved through the precise and high-resolution programming of the magnetization pattern on the emitter surface, utilizing laser-assisted local field cooling of an exchange-biased ferromagnetic heterostructure. Moreover, we outline a generic design strategy for realizing specific complex structured terahertz fields in the far field. Our device successfully demonstrates the generation of terahertz waves with diverse structured polarization states, including spatially separated circular polarizations, azimuthal or radial polarization states, and a full Poincare beam. This innovation opens a new avenue for designing and generating structured terahertz radiations, with potential applications in terahertz microscopy, communication, quantum information, and light-matter interactions.

physics.optics↗
arXiv2023

Context-faithful Prompting for Large Language Models

Large language models (LLMs) encode parametric knowledge about world facts and have shown remarkable performance in knowledge-driven NLP tasks. However, their reliance on parametric knowledge may cause them to overlook contextual cues, leading to incorrect predictions in context-sensitive NLP tasks (e.g., knowledge acquisition tasks). In this paper, we seek to assess and enhance LLMs' contextual faithfulness in two aspects: knowledge conflict and prediction with abstention. We demonstrate that LLMs' faithfulness can be significantly improved using carefully designed prompting strategies. In particular, we identify opinion-based prompts and counterfactual demonstrations as the most effective methods. Opinion-based prompts reframe the context as a narrator's statement and inquire about the narrator's opinions, while counterfactual demonstrations use instances containing false facts to improve faithfulness in knowledge conflict situations. Neither technique requires additional training. We conduct experiments on three datasets of two standard NLP tasks, machine reading comprehension and relation extraction, and the results demonstrate significant improvement in faithfulness to contexts. Code and data are released at https://github.com/wzhouad/context-faithful-llm.

cs.CL↗
arXiv2023

BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys

Rapid progress has been made in instruction-learning for image editing with natural-language instruction, as exemplified by InstructPix2Pix. In biomedicine, such methods can be applied to counterfactual image generation, which helps differentiate causal structure from spurious correlation and facilitate robust image interpretation for disease progression modeling. However, generic image-editing models are ill-suited for the biomedical domain, and counterfactual biomedical image generation is largely underexplored. In this paper, we present BiomedJourney, a novel method for counterfactual biomedical image generation by instruction-learning from multimodal patient journeys. Given a patient with two biomedical images taken at different time points, we use GPT-4 to process the corresponding imaging reports and generate a natural language description of disease progression. The resulting triples (prior image, progression description, new image) are then used to train a latent diffusion model for counterfactual biomedical image generation. Given the relative scarcity of image time series data, we introduce a two-stage curriculum that first pretrains the denoising network using the much more abundant single image-report pairs (with dummy prior image), and then continues training using the counterfactual triples. Experiments using the standard MIMIC-CXR dataset demonstrate the promise of our method. In a comprehensive battery of tests on counterfactual medical image generation, BiomedJourney substantially outperforms prior state-of-the-art methods in instruction image editing and medical image generation such as InstructPix2Pix and RoentGen. To facilitate future study in counterfactual medical generation, we plan to release our instruction-learning code and pretrained models.

cs.CV↗
arXiv2023

Asynchronous Federated Learning with Incentive Mechanism Based on Contract Theory

To address the challenges posed by the heterogeneity inherent in federated learning (FL) and to attract high-quality clients, various incentive mechanisms have been employed. However, existing incentive mechanisms are typically utilized in conventional synchronous aggregation, resulting in significant straggler issues. In this study, we propose a novel asynchronous FL framework that integrates an incentive mechanism based on contract theory. Within the incentive mechanism, we strive to maximize the utility of the task publisher by adaptively adjusting clients' local model training epochs, taking into account factors such as time delay and test accuracy. In the asynchronous scheme, considering client quality, we devise aggregation weights and an access control algorithm to facilitate asynchronous aggregation. Through experiments conducted on the MNIST dataset, the simulation results demonstrate that the test accuracy achieved by our framework is 3.12% and 5.84% higher than that achieved by FedAvg and FedProx without any attacks, respectively. The framework exhibits a 1.35% accuracy improvement over the ideal Local SGD under attacks. Furthermore, aiming for the same target accuracy, our framework demands notably less computation time than both FedAvg and FedProx.

cs.LG↗
arXiv2023

Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology

Clinical trial matching is a key process in health delivery and discovery. In practice, it is plagued by overwhelming unstructured data and unscalable manual processing. In this paper, we conduct a systematic study on scaling clinical trial matching using large language models (LLMs), with oncology as the focus area. Our study is grounded in a clinical trial matching system currently in test deployment at a large U.S. health network. Initial findings are promising: out of box, cutting-edge LLMs, such as GPT-4, can already structure elaborate eligibility criteria of clinical trials and extract complex matching logic (e.g., nested AND/OR/NOT). While still far from perfect, LLMs substantially outperform prior strong baselines and may serve as a preliminary solution to help triage patient-trial candidates with humans in the loop. Our study also reveals a few significant growth areas for applying LLMs to end-to-end clinical trial matching, such as context limitation and accuracy, especially in structuring patient information from longitudinal medical records.

cs.CL↗
arXiv2023

UNITE: A Unified Benchmark for Text-to-SQL Evaluation

A practical text-to-SQL system should generalize well on a wide variety of natural language questions, unseen database schemas, and novel SQL query structures. To comprehensively evaluate text-to-SQL systems, we introduce a UNIfied benchmark for Text-to-SQL Evaluation (UNITE). It is composed of publicly available text-to-SQL datasets, containing natural language questions from more than 12 domains, SQL queries from more than 3.9K patterns, and 29K databases. Compared to the widely used Spider benchmark, we introduce $\sim$120K additional examples and a threefold increase in SQL patterns, such as comparative and boolean questions. We conduct a systematic study of six state-of-the-art (SOTA) text-to-SQL parsers on our new benchmark and show that: 1) Codex performs surprisingly well on out-of-domain datasets; 2) specially designed decoding methods (e.g. constrained beam search) can improve performance for both in-domain and out-of-domain settings; 3) explicitly modeling the relationship between questions and schemas further improves the Seq2Seq models. More importantly, our benchmark presents key challenges towards compositional generalization and robustness issues -- which these SOTA models cannot address well. Our code and data processing script are available at https://github.com/awslabs/unified-text2sql-benchmark

cs.CL↗
arXiv2023

Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events

Large language models (LLMs), such as GPT-4, have demonstrated remarkable capabilities across a wide range of tasks, including health applications. In this paper, we study how LLMs can be used to scale biomedical knowledge curation. We find that while LLMs already possess decent competency in structuring biomedical text, by distillation into a task-specific student model through self-supervised learning, substantial gains can be attained over out-of-box LLMs, with additional advantages such as cost, efficiency, and white-box model access. We conduct a case study on adverse drug event (ADE) extraction, which is an important area for improving care. On standard ADE extraction evaluation, a GPT-3.5 distilled PubMedBERT model attained comparable accuracy as supervised state-of-the-art models without using any labeled data. Despite being over 1,000 times smaller, the distilled model outperformed its teacher GPT-3.5 by over 6 absolute points in F1 and GPT-4 by over 5 absolute points. Ablation studies on distillation model choice (e.g., PubMedBERT vs BioGPT) and ADE extraction architecture shed light on best practice for biomedical knowledge extraction. Similar gains were attained by distillation for other standard biomedical knowledge extraction tasks such as gene-disease associations and protected health information, further illustrating the promise of this approach.

cs.CL↗
arXiv2023

Convolutional neural networks for large-scale dynamical modeling of itinerant magnets

Complex spin textures in itinerant electron magnets hold promises for next-generation memory and information technology. The long-ranged and often frustrated electron-mediated spin interactions in these materials give rise to intriguing localized spin structures such as skyrmions. Yet, simulations of magnetization dynamics for such itinerant magnets are computationally difficult due to the need for repeated solutions to the electronic structure problems. We present a convolutional neural network (CNN) model to accurately and efficiently predict the electron-induced magnetic torques acting on local spins. Importantly, as the convolutional operations with a fixed kernel (receptive field) size naturally take advantage of the locality principle for many-electron systems, CNN offers a scalable machine learning approach to spin dynamics. We apply our approach to enable large-scale dynamical simulations of skyrmion phases in itinerant spin systems. By incorporating the CNN model into Landau-Lifshitz-Gilbert dynamics, our simulations successfully reproduce the relaxation process of the skyrmion phase and stabilize a skyrmion lattice in larger systems. The CNN model also allows us to compute the effective receptive fields, thus providing a systematic and unbiased method for determining the locality of the original electron models.

cond-mat.str-el↗
arXiv2023

LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day

Conversational generative AI has demonstrated remarkable promise for empowering biomedical practitioners, but current investigations focus on unimodal text. Multimodal conversational AI has seen rapid progress by leveraging billions of image-text pairs from the public web, but such general-domain vision-language models still lack sophistication in understanding and conversing about biomedical images. In this paper, we propose a cost-efficient approach for training a vision-language conversational assistant that can answer open-ended research questions of biomedical images. The key idea is to leverage a large-scale, broad-coverage biomedical figure-caption dataset extracted from PubMed Central, use GPT-4 to self-instruct open-ended instruction-following data from the captions, and then fine-tune a large general-domain vision-language model using a novel curriculum learning method. Specifically, the model first learns to align biomedical vocabulary using the figure-caption pairs as is, then learns to master open-ended conversational semantics using GPT-4 generated instruction-following data, broadly mimicking how a layperson gradually acquires biomedical knowledge. This enables us to train a Large Language and Vision Assistant for BioMedicine (LLaVA-Med) in less than 15 hours (with eight A100s). LLaVA-Med exhibits excellent multimodal conversational capability and can follow open-ended instruction to assist with inquiries about a biomedical image. On three standard biomedical visual question answering datasets, LLaVA-Med outperforms previous supervised state-of-the-art on certain metrics. To facilitate biomedical multimodal research, we will release our instruction-following data and the LLaVA-Med model.

cs.CV↗
arXiv2023

Continual Contrastive Finetuning Improves Low-Resource Relation Extraction

Relation extraction (RE), which has relied on structurally annotated corpora for model training, has been particularly challenging in low-resource scenarios and domains. Recent literature has tackled low-resource RE by self-supervised learning, where the solution involves pretraining the entity pair embedding by RE-based objective and finetuning on labeled data by classification-based objective. However, a critical challenge to this approach is the gap in objectives, which prevents the RE model from fully utilizing the knowledge in pretrained representations. In this paper, we aim at bridging the gap and propose to pretrain and finetune the RE model using consistent objectives of contrastive learning. Since in this kind of representation learning paradigm, one relation may easily form multiple clusters in the representation space, we further propose a multi-center contrastive loss that allows one relation to form multiple clusters to better align with pretraining. Experiments on two document-level RE datasets, BioRED and Re-DocRED, demonstrate the effectiveness of our method. Particularly, when using 1% end-task training data, our method outperforms PLM-based RE classifier by 10.5% and 6.1% on the two datasets, respectively.

cs.CL↗
arXiv2023

Semi-Asynchronous Federated Edge Learning Mechanism via Over-the-air Computation

Over-the-air Computation (AirComp) has been demonstrated as an effective transmission scheme to boost the efficiency of federated edge learning (FEEL). However, existing FEEL systems with AirComp scheme often employ traditional synchronous aggregation mechanisms for local model aggregation in each global round, which suffer from the stragglers issues. In this paper, we propose a semi-asynchronous aggregation FEEL mechanism with AirComp scheme (PAOTA) to improve the training efficiency of the FEEL system in the case of significant heterogeneity in data and devices. Taking the staleness and divergence of model updates from edge devices into consideration, we minimize the convergence upper bound of the FEEL global model by adjusting the uplink transmit power of edge devices at each aggregation period. The simulation results demonstrate that our proposed algorithm achieves convergence performance close to that of the ideal Local SGD. Furthermore, with the same target accuracy, the training time required for PAOTA is less than that of the ideal Local SGD and the synchronous FEEL algorithm via AirComp.

cs.LG↗
arXiv2023

Generate then Select: Open-ended Visual Question Answering Guided by World Knowledge

The open-ended Visual Question Answering (VQA) task requires AI models to jointly reason over visual and natural language inputs using world knowledge. Recently, pre-trained Language Models (PLM) such as GPT-3 have been applied to the task and shown to be powerful world knowledge sources. However, these methods suffer from low knowledge coverage caused by PLM bias -- the tendency to generate certain tokens over other tokens regardless of prompt changes, and high dependency on the PLM quality -- only models using GPT-3 can achieve the best result. To address the aforementioned challenges, we propose RASO: a new VQA pipeline that deploys a generate-then-select strategy guided by world knowledge for the first time. Rather than following the de facto standard to train a multi-modal model that directly generates the VQA answer, RASO first adopts PLM to generate all the possible answers, and then trains a lightweight answer selection model for the correct answer. As proved in our analysis, RASO expands the knowledge coverage from in-domain training data by a large margin. We provide extensive experimentation and show the effectiveness of our pipeline by advancing the state-of-the-art by 4.1% on OK-VQA, without additional computation cost. Code and models are released at http://cogcomp.org/page/publication_view/1010

cs.CL↗