arXiv subjects

Shengze Cai

Publications and source records attributed to Shengze Cai.

24 records · Page 2Linked to original sources

arXiv2021

AOSLO-net: A deep learning-based method for automatic segmentation of retinal microaneurysms from adaptive optics scanning laser ophthalmoscope images

Microaneurysms (MAs) are one of the earliest signs of diabetic retinopathy (DR), a frequent complication of diabetes that can lead to visual impairment and blindness. Adaptive optics scanning laser ophthalmoscopy (AOSLO) provides real-time retinal images with resolution down to 2 $μm$ and thus allows detection of the morphologies of individual MAs, a potential marker that might dictate MA pathology and affect the progression of DR. In contrast to the numerous automatic models developed for assessing the number of MAs on fundus photographs, currently there is no high throughput image protocol available for automatic analysis of AOSLO photographs. To address this urgency, we introduce AOSLO-net, a deep neural network framework with customized training policies to automatically segment MAs from AOSLO images. We evaluate the performance of AOSLO-net using 87 DR AOSLO images and our results demonstrate that the proposed model outperforms the state-of-the-art segmentation model both in accuracy and cost and enables correct MA morphological classification.

eess.IV↗

arXiv2021

Physics-informed neural networks (PINNs) for fluid mechanics: A review

Despite the significant progress over the last 50 years in simulating flow problems using numerical discretization of the Navier-Stokes equations (NSE), we still cannot incorporate seamlessly noisy data into existing algorithms, mesh-generation is complex, and we cannot tackle high-dimensional problems governed by parametrized NSE. Moreover, solving inverse flow problems is often prohibitively expensive and requires complex and expensive formulations and new computer codes. Here, we review flow physics-informed learning, integrating seamlessly data and mathematical models, and implementing them using physics-informed neural networks (PINNs). We demonstrate the effectiveness of PINNs for inverse problems related to three-dimensional wake flows, supersonic flows, and biomedical flows.

physics.flu-dyn↗

arXiv2021

Flow over an espresso cup: Inferring 3D velocity and pressure fields from tomographic background oriented schlieren videos via physics-informed neural networks

Tomographic background oriented schlieren (Tomo-BOS) imaging measures density or temperature fields in 3D using multiple camera BOS projections, and is particularly useful for instantaneous flow visualizations of complex fluid dynamics problems. We propose a new method based on physics-informed neural networks (PINNs) to infer the full continuous 3D velocity and pressure fields from snapshots of 3D temperature fields obtained by Tomo-BOS imaging. PINNs seamlessly integrate the underlying physics of the observed fluid flow and the visualization data, hence enabling the inference of latent quantities using limited experimental data. In this hidden fluid mechanics paradigm, we train the neural network by minimizing a loss function composed of a data mismatch term and residual terms associated with the coupled Navier-Stokes and heat transfer equations. We first quantify the accuracy of the proposed method based on a 2D synthetic data set for buoyancy-driven flow, and subsequently apply it to the Tomo-BOS data set, where we are able to infer the instantaneous velocity and pressure fields of the flow over an espresso cup based only on the temperature field provided by the Tomo-BOS imaging. Moreover, we conduct an independent PIV experiment to validate the PINN inference for the unsteady velocity field at a center plane. To explain the observed flow physics, we also perform systematic PINN simulations at different Reynolds and Richardson numbers and quantify the variations in velocity and pressure fields. The results in this paper indicate that the proposed deep learning technique can become a promising direction in experimental fluid mechanics.

physics.flu-dyn↗

arXiv2020

Operator learning for predicting multiscale bubble growth dynamics

Simulating and predicting multiscale problems that couple multiple physics and dynamics across many orders of spatiotemporal scales is a great challenge that has not been investigated systematically by deep neural networks (DNNs). Herein, we develop a framework based on operator regression, the so-called deep operator network (DeepONet), with the long term objective to simplify multiscale modeling by avoiding the fragile and time-consuming "hand-shaking" interface algorithms for stitching together heterogeneous descriptions of multiscale phenomena. To this end, as a first step, we investigate if a DeepONet can learn the dynamics of different scale regimes, one at the deterministic macroscale and the other at the stochastic microscale regime with inherent thermal fluctuations. Specifically, we test the effectiveness and accuracy of DeepONet in predicting multirate bubble growth dynamics, which is described by a Rayleigh-Plesset (R-P) equation at the macroscale and modeled as a stochastic nucleation and cavitation process at the microscale by dissipative particle dynamics (DPD). Taken together, our findings demonstrate that DeepONets can be employed to unify the macroscale and microscale models of the multirate bubble growth problem, hence providing new insight into the role of operator regression via DNNs in tackling realistic multiscale problems and in simplifying modeling with heterogeneous descriptions.

physics.comp-ph↗

arXiv2020

DeepM&Mnet: Inferring the electroconvection multiphysics fields based on operator approximation by neural networks

Electroconvection is a multiphysics problem involving coupling of the flow field with the electric field as well as the cation and anion concentration fields. For small Debye lengths, very steep boundary layers are developed, but standard numerical methods can simulate the different regimes quite accurately. Here, we use electroconvection as a benchmark problem to put forward a new data assimilation framework, the DeepM&Mnet, for simulating multiphysics and multiscale problems at speeds much faster than standard numerical methods using pre-trained neural networks (NNs). We first pre-train DeepONets that can predict independently each field, given general inputs from the rest of the fields of the coupled system. DeepONets can approximate nonlinear operators and are composed of two sub-networks, a branch net for the input fields and a trunk net for the locations of the output field. DeepONets, which are extremely fast, are used as building blocks in the DeepM&Mnet and form constraints for the multiphysics solution along with some sparse available measurements of any of the fields. We demonstrate the new methodology and document the accuracy of each individual DeepONet, and subsequently we present two different DeepM&Mnet architectures that infer accurately and efficiently 2D electroconvection fields for unseen electric potentials. The DeepM&Mnet framework is general and can be applied for building any complex multiphysics and multiscale models based on very few measurements using pre-trained DeepONets in a plug-and-play mode.

physics.comp-ph↗

arXiv2020

NSFnets (Navier-Stokes Flow nets): Physics-informed neural networks for the incompressible Navier-Stokes equations

We employ physics-informed neural networks (PINNs) to simulate the incompressible flows ranging from laminar to turbulent flows. We perform PINN simulations by considering two different formulations of the Navier-Stokes equations: the velocity-pressure (VP) formulation and the vorticity-velocity (VV) formulation. We refer to these specific PINNs for the Navier-Stokes flow nets as NSFnets. Analytical solutions and direct numerical simulation (DNS) databases provide proper initial and boundary conditions for the NSFnet simulations. The spatial and temporal coordinates are the inputs of the NSFnets, while the instantaneous velocity and pressure fields are the outputs for the VP-NSFnet, and the instantaneous velocity and vorticity fields are the outputs for the VV-NSFnet. These two different forms of the Navier-Stokes equations together with the initial and boundary conditions are embedded into the loss function of the PINNs. No data is provided for the pressure to the VP-NSFnet, which is a hidden state and is obtained via the incompressibility constraint without splitting the equations. We obtain good accuracy of the NSFnet simulation results upon convergence of the loss function, verifying that NSFnets can effectively simulate complex incompressible flows using either the VP or the VV formulations. We also perform a systematic study on the weights used in the loss function for the data/physics components and investigate a new way of computing the weights dynamically to accelerate training and enhance accuracy. Our results suggest that the accuracy of NSFnets, for both laminar and turbulent flows, can be improved with proper tuning of weights (manual or dynamic) in the loss function.

physics.comp-ph↗