arXiv subjects

Shern R. Tee

Publications and source records attributed to Shern R. Tee.

5 recordsLinked to original sources

arXiv2025

Study of the Molecular Level Mechanism of Nanoscale Alternating Current Electrohydrodynamic Flow

This study investigates the molecular-level mechanism of Alternating Current Electrohydrodynamic (AC-EHD) flow in nanopores under high-frequency conditions, using molecular dynamics simulations. A gold-NaCl system with symmetric and asymmetric electrode configurations is used to analyze the flow patterns under high-frequency AC potentials. Our findings reveal localized heat generation near the electrode leading to a steep temperature gradient. An order parameter analysis indicates that the heat generation is due to the periodic change in the alignment of water molecules under AC potentials. At these high frequencies the influence of Na$^+$ and Cl$^-$ ions are negligible. The heat generation and temperature gradient are found to increase with the applied AC frequency. Three different electrode configurations were studied by varying the size and distance between the electrodes. A net directional flow develops in the asymmetric electrode structures. A possible mechanism for this is proposed by analyzing the flow patterns using velocity and temperature profiles, order parameters, streamline plots and mean square displacements. Different effects on the fluid were identified including those associated with temperature gradients, temperature-dependent fluid properties, and non-uniform electric fields. The asymmetric electrode structure created an imbalance in these effects and generated a net directional flow. These findings suggest the existence of a form of nanoscale AC-EHD flow that operates in a frequency regime above that of conventional electroosmotic and electrothermal mechanisms and that, unlike these mechanisms, occurs independently of ionic concentration. Thereby this work provides insights for optimizing AC-EHD flow in nanoscale systems where precise fluid manipulation is critical.

cond-mat.soft↗

arXiv2024

Local temperature measurement in molecular dynamics simulations with rigid constraints

Constraining molecules in simulations (such as with constant bond lengths and/or angles) reduces their degrees of freedom (DoF), which in turn affects temperature calculations in those simulations. When local temperatures are measured, e.g. from a set of atoms in a subvolume or from velocities in one Cartesian direction, the result can appear to unphysically violate equipartition of the kinetic energy if the local DoF are not correctly calculated. Here we determine how to correctly calculate local temperatures from arbitrary Cartesian component kinetic energies, accounting for general geometric constraints, by self-consistently evaluating the DoF of atoms subjected to those constraints. The method is validated on a variety of test systems, including systems subject to a temperature gradient and those confined between walls. It is also shown to provide a sensitive test for the breakdown of kinetic energy equipartition caused by the approximate nature of numerical integration or insufficient equilibration times. As a practical demonstration, we show that kinetic energy equipartition between C and H atoms connected by rigid bonds can be violated even at the commonly-used time step of 2 fs, and that this equipartition violation appears to usefully indicate configurational overheating.

cond-mat.stat-mech↗

arXiv2023

Interfacial Thermal Transport and Electrical Performance of Supercapacitors with Graphene/Carbon Nanotube Composite Electrodes

Advanced supercapacitors have great potential to transform how we store and utilize energy, leading to more efficient and sustainable energy systems. This study reveals the structural features influencing the interfacial thermal transport and electrical performances of supercapacitors, using the constant potential and constant charge molecular dynamics simulation techniques. Thermal and electrical properties were calculated for graphene/carbon nanotube composite electrodes and ionic liquid electrolytes with different nanotube diameter, number, layers, and alignments of the nanotubes. The effect of application of a constant potential on the Kapitza resistance is determined for the first time. The vertically aligned CNT structures exhibited higher electrical performance, while the horizontal arrangement showed better thermal performance. Optimum electrode configurations were identified by considering thermal and electrical performance, along with other design factors, such as structural stability, ease of manufacturing, and scalability. After considering all these factors, the horizontally stacked multi-layer CNT arrangement emerged as the optimal electrode structure. The insights gained from this study aid in comprehending the effects of variations in electrode structure, thereby enabling efficient supercapacitor electrode design.

physics.app-ph↗

arXiv2022

ELECTRODE: An electrochemistry package for atomistic simulations

Constant potential methods (CPM) enable computationally efficient simulations of the solid-liquid interface at conducting electrodes in molecular dynamics (MD). They have been successfully used, for example, to realistically model the behavior of ionic liquids or water-in-salt electrolytes in supercapacitors and batteries. The CPM models conductive electrodes by updating charges of individual electrode atoms according to the applied electric potential and the (time-dependent) local electrolyte structure. Here we present a feature-rich CPM implementation, called ELECTRODE, for the Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS), which includes a constrained charge method and a thermo-potentiostat. The ELECTRODE package also contains a finite-field approach, multiple corrections for non-periodic boundary conditions of the particle-particle particle-mesh solver, and a Thomas-Fermi model for using non-ideal metals as electrodes. We demonstrate the capabilities of this implementation for a parallel-plate electrical double-layer capacitor, for which we have investigated the charging times with the different implemented methods and found an interesting relationship between water and ionic dipole relaxations. To prove the validity of the one-dimensional correction for the long-range electrostatics, we estimated the vacuum capacitance of two co-axial carbon nanotubes and compared it to structureless cylinders, for which an analytical expression exists. In summary, the ELECTRODE package enables efficient electrochemical simulations using state-of-the-art methods, allowing one to simulate even heterogeneous electrodes. Moreover, it allows unveiling more rigorously how electrode curvature affects the capacitance with the one-dimensional correction.

physics.chem-ph↗

arXiv2022

Fully Periodic, Computationally Efficient Constant Potential Molecular Dynamics Simulations of Ionic Liquid Supercapacitors

Molecular dynamics (MD) simulations of complex electrochemical systems, such as ionic liquid supercapacitors, are increasingly including the constant potential method (CPM) to model conductive electrodes at specified potential difference, but the inclusion of CPM can be computationally expensive. We demonstrate the computational savings available in CPM MD simulations of ionic liquid supercapacitors when the usual non-periodic slab geometry is replaced with fully periodic boundary conditions. We show how a doubled cell approach, previously used in non-CPM MD simulations of charged interfaces, can be used to enable fully periodic CPM MD simulations. Using either a doubled cell approach, or a finite field approach previously reported by others, fully periodic CPM MD simulations produce comparable results to the traditional slab geometry simulations with a nearly double speed-up in computational time. Indeed, these savings can offset the additional cost of the CPM algorithm, resulting in periodic CPM MD simulations that are faster than the non-periodic, fixed-charge equivalent simulations for the ionic liquid supercapacitors studied here.

cond-mat.mtrl-sci↗