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Shier Nee Saw

Publications and source records attributed to Shier Nee Saw.

3 recordsLinked to original sources

A Multimodal Feature Distillation with Mamba-Transformer Network for Brain Tumor Segmentation with Incomplete Modalities

Existing brain tumor segmentation methods usually utilize multiple Magnetic Resonance Imaging (MRI) modalities in brain tumor images for segmentation, which can achieve better segmentation performance. However, in clinical applications, some modalities are often missing due to resource constraints, resulting in significant performance degradation for methods that rely on complete modality segmentation. In this paper, we propose a Multimodal feature distillation with Mamba-Transformer hybrid network (MMTSeg) for accurate brain tumor segmentation with missing modalities. We first employ a Multimodal Feature Distillation (MFD) module to distill feature-level multimodal knowledge into different unimodalities to extract complete modality information. We further develop an Unimodal Feature Enhancement (UFE) module to model the semantic relationship between global and local information. Finally, we built a Cross-Modal Fusion (CMF) module to explicitly align the global correlations across modalities, even when some modalities are missing. Complementary features within and across modalities are refined by the Mamba-Transformer hybrid architectures in both the UFE and CMF modules, dynamically capturing long-range dependencies and global semantic information for complex spatial contexts. A boundary-wise loss function is employed as the segmentation loss of the proposed MMTSeg to minimize boundary discrepancies for a distance-based metric. Our ablation study demonstrates the importance of the proposed feature enhancement and fusion modules in the proposed network and the Transformer with Mamba block for improving the performance of brain tumor segmentation with missing modalities. Extensive experiments on the BraTS 2018 and BraTS 2020 datasets demonstrate that the proposed MMTSeg framework outperforms state-of-the-art methods when modalities are missing.

cs.CV

A functional exchange shunt in the umbilical cord: the role of coiling in solute and heat transfer

The umbilical cord plays a critical role in delivering nutrients and oxygen from the placenta to the fetus through the umbilical vein, while the two umbilical arteries carry deoxygenated blood with waste products back to the placenta. Although solute exchange in the placenta has been extensively studied, exchange within the cord tissue has not been investigated. Here, we explore the hypothesis that the coiled structure of the umbilical cord could strengthen diffusive coupling between the arteries and the vein, resulting in a functional shunt. We calculate the diffusion of solutes, such as oxygen, and heat in the umbilical cord to quantify how this shunt is affected by vascular configuration within the cord. We demonstrate that the shunt is enhanced by coiling and vessel proximity. Furthermore, our model predicts that typical vascular configurations of the human cord tend to minimise shunting, which could otherwise disrupt thermal regulation of the fetus. We also show that the exchange, amplified by coiling, can provide additional oxygen supply to the cord tissue surrounding the umbilical vessels.

q-bio.TO

A Deep Learning Network for the Classification of Intracardiac Electrograms in Atrial Tachycardia

A key technology enabling the success of catheter ablation treatment for atrial tachycardia is activation mapping, which relies on manual local activation time (LAT) annotation of all acquired intracardiac electrogram (EGM) signals. This is a time-consuming and error-prone procedure, due to the difficulty in identifying the signal activation peaks for fractionated signals. This work presents a Deep Learning approach for the automated classification of EGM signals into three different types: normal, abnormal, and unclassified, which forms part of the LAT annotation pipeline, and contributes towards bypassing the need for manual annotations of the LAT. The Deep Learning network, the CNN-LSTM model, is a hybrid network architecture which combines convolutional neural network (CNN) layers with long short-term memory (LSTM) layers. 1452 EGM signals from a total of 9 patients undergoing clinically-indicated 3D cardiac mapping were used for the training, validation and testing of our models. From our findings, the CNN-LSTM model achieved an accuracy of 81% for the balanced dataset. For comparison, we separately developed a rule-based Decision Trees model which attained an accuracy of 67% for the same balanced dataset. Our work elucidates that analysing the EGM signals using a set of explicitly specified rules as proposed by the Decision Trees model is not suitable as EGM signals are complex. The CNN-LSTM model, on the other hand, has the ability to learn the complex, intrinsic features within the signals and identify useful features to differentiate the EGM signals.

eess.SP