Searcharxiv⌕ Search

arXiv subjects

Shigeyuki Komura

Publications and source records attributed to Shigeyuki Komura.

At least 19 recordsLinked to original sources

Domain growth in lipid membranes and the budding instability

We investigate the growth of a circular domain in a phase-separating lipid membrane and its relation to the budding instability. We describe the in-plane dynamics with a conserved, time-dependent Ginzburg-Landau model under radial symmetry. Numerical solutions show a crossover of the domain size $D$ as a function of time $t$ from $D\sim t^{1/3}$ at early times to $D\sim t^{1/2}$ at later times, followed by saturation due to finite system size. The time-dependent line tension $σ(t)$, evaluated from the evolving concentration profile, rises rapidly before approaching the planar-interface value. This behavior distinguishes an early line-tension-dominated regime from a later domain-size-dominated regime. To estimate the budding instability, we combine $D(t)$ and $σ(t)$ with a quasistatic criterion for the loss of stability of a partially budded domain. The budding-instability time decreases with increasing membrane spontaneous curvature and increases near the critical point. Thus, the evolution of both domain size and line tension is essential for determining the time required for the budding instability.

cond-mat.soft↗

Geometric formulation of state-dependent Langevin dynamics using scalar free energy

Stochastic dynamics with state-dependent diffusion arise broadly in confined, anisotropic, and hydrodynamically coupled systems. The conventional Langevin equation contains a spurious drift associated with multiplicative noise. Since the restricted free energy is generally non-scalar, the covariance is not explicit. Here, we reformulate state-dependent Langevin dynamics using a scalar free energy and a diffusion metric defined by the inverse diffusion tensor. The conventional spurious drift is then expressed as a Christoffel contribution. Although our formulation is mathematically equivalent to the conventional one through the relation between the restricted and scalar free energies, it makes coordinate covariance explicit and enables the phenomenological construction of thermodynamic potentials directly from system symmetries. We demonstrate its consistency in representative examples of state-dependent diffusion arising from coordinate transformations, geometric confinement, and projection from curved to flat spaces.

cond-mat.soft↗

Non-uniform swelling of polyelectrolyte hydrogels: effects of charge regulation

We investigate the impact of charge regulation (CR) on the non-uniform swelling behavior of polyelectrolyte hydrogels. The Poisson-Boltzmann theory with electro-elastic coupling between the local polymer density and elastic deformation is considered. We investigate the spatial distributions of the elastic displacement and polymer density under different salt concentrations and compare charge-regulated gels with fixed-charge (non-CR) gels of the same net charge. Our results show that the CR induces spatially varying charge fractions, which strengthen the electro-elastic response and lead to stronger non-uniform swelling compared with non-CR gels. These findings provide a theoretical basis for understanding and controlling non-uniform swelling in responsive polyelectrolyte hydrogels.

cond-mat.soft↗

An Informational Route to Negative Mobility

Mobility links an applied force to the resulting motion and is generally positive near equilibrium. Far from equilibrium, however, internal energy input can reverse this response. Here we show that information feedback provides a distinct route to negative mobility. We consider an overdamped dimer consisting of a run-and-tumble particle coupled by a spring to a passive Brownian particle. Information enters through periodic measurements of the relative displacement, which are processed to reset the active polarity. Although the unloaded dimer has no net drift, an applied force biases its internal configuration, and an information-mechanical feedback amplifies and converts this bias into active propulsion against the force, producing negative mobility. We develop an analytical theory that captures this mechanism and yields a feedback-gain criterion for response reversal. Including the information-processing cost reveals a tradeoff: rapid feedback enhances reverse transport but incurs a growing informational cost, yielding an optimal finite feedback rate for information-inclusive efficiency. These results show that information can reshape nonequilibrium response by controlling how internally supplied energy is converted into macroscopic transport.

cond-mat.soft↗

Covariant Onsager and Onsager-Machlup principles for active and inertial dynamics

The Onsager principle provides a variational route to the phenomenological equations of dissipative dynamics through the minimization of the Rayleighian. We develop a covariant formulation of the Onsager principle for active and inertial systems, ensuring geometric consistency under coordinate transformations. To further incorporate thermal fluctuations, we formulate the Onsager-Machlup principle for active and inertial systems by considering the Onsager-Machlup functional and the corresponding path probability for stochastic trajectories. Requiring that the path probability obeys the detailed fluctuation theorem, we show that the extended Onsager-Machlup theory is consistent with stochastic thermodynamics. The extended OP and OMP offer a unified and useful variational framework for deriving the dynamical equations of active and inertial systems.

cond-mat.soft↗

Lateral hydrodynamics in supported membranes: The Evans-Sackmann model and its extensions

We review the theoretical development and modern applications of the Evans-Sackmann hydrodynamic model for lateral transport in supported fluid membranes. We first cover the original formulation, emphasizing the linear momentum decay term that captures membrane-substrate coupling mediated by a thin lubricating fluid layer. This coupling term enables quantitative interpretation of tracer diffusion measurements in supported bilayers. Building on this foundation, we survey theoretical extensions that relax standard boundary conditions at the inclusion perimeter, where inclusions refer to embedded objects such as proteins, lipid domains, or tracer particles within the membrane. We discuss the drag of a disk and a liquid domain, as well as the dynamics of membrane phase separation. We further highlight how the supported-membrane mobility tensor serves as a unifying tool for systematic treatments of correlated diffusion, polymer dynamics, phase separation kinetics, and many-body interactions in quasi-two-dimensional environments. Finally, we discuss recent extensions to active and chiral membranes, where odd viscosity provides a transverse hydrodynamic response and offers a possible route for detecting chirality in two-dimensional fluids.

cond-mat.soft↗

Electrostatic effects in nano-reactor-confined charge regulated macroions

We formulate a thermodynamic model of a nano-reactor containing charge-regulated macroions within an electrolyte-permeable enclosure. The model is then formalized within the Poisson-Boltzmann electrostatics augmented by the consistent inclusion of the charge dissociation of molecular groups residing on the surface of the entrapped macroions via charge regulation formalism. By solving the basic equilibrium equations in the linearized Debye-Hückel type approximation, we analyze the salient features of the inhomogeneous electrolyte distribution and macroion charge. We found that the surface charge asymmetry/symmetry of the macroions strongly affects the spatial profile of electrostatic potential. The effective screening length shows the non-monotonic behavior, arising from the complex interplay between the bathing external solution and macroion effective charges, which govern charge regulation equilibria. The total pressure at the nano-reactor enclosure boundary decreases monotonically as the enclosure radius and the ionic bulk salt concentration increase. Also, the resulting pressure is strongly influenced by the surface charge densities of the nano-reactor and the number of confined macroions.

cond-mat.soft↗

Neural optimization of the most probable paths of 3D active Brownian particles

We develop a variational neural-network framework to determine the most probable path (MPP) of a 3D active Brownian particle (ABP) by directly minimizing the Onsager-Machlup integral (OMI). To obtain the OMI, we use the Onsager-Machlup variational principle for active systems and construct the Rayleighian of the ABP by including its active power. This approach reveals geometric transitions of the MPP from in-plane I- and U-shaped paths to 3D helical paths as the final time and net displacement are varied. We also demonstrate that the initial and final boundary conditions have a significant impact on the MPPs. Our results show that neural optimization combined with the Onsager-Machlup variational principle provides an efficient and versatile framework for exploring optimal transition pathways in active and nonequilibrium systems.

cond-mat.soft↗

Analytical response functions for a compressible thin fluid layer with odd viscosity

Fluids composed of chiral active components can exhibit odd viscosity, a property that breaks time-reversal and parity symmetries. We investigate the hydrodynamic response to monopole and dipole singularities in a compressible thin fluid layer with odd viscosity, supported by a conventional lubrication layer. Using the two-dimensional Green's function in Fourier space, we derive exact analytical solutions for the flow and pressure fields. These solutions provide a detailed description of the hydrodynamic interactions governing the motion of colloidal particles and microswimmers in confined chiral fluids, offering insight into the role of odd viscosity in modifying particle dynamics and collective behavior. The derived results are directly applicable to modeling transport, control, and self-organization phenomena in active and chiral microfluidic systems.

cond-mat.soft↗

Demon's variational principle for informational active matter

The interplay between information, dissipation, and control is reshaping our understanding of thermodynamics in feedback-regulated systems. We develop the informational Onsager-Machlup principle, a generalized variational framework that unifies energetic, dissipative, and informational contributions within a single formalism. This framework introduces a conditioned Onsager-Machlup integral to quantify path entropy under specified memory states and enables the derivation of cumulant generating functions for arbitrary observables in systems with measurement and feedback. Our formulation is consistent with stochastic thermodynamics and information thermodynamics. Applying this principle to a minimal model of an information-driven swimmer, we obtain analytical expressions for the mean velocity and higher-order cumulants in the single-measurement case. For repeated measurements and the steady state, we derive approximate analytical expressions by using a Gaussian closure for the distribution of measured velocities. Our analytical expression shows good agreement with numerical results, except for cases of extreme drag asymmetry.

cond-mat.soft↗

Brownian motion of a rod threading through a ring with fixed ring-center

We study the Brownian motion of a rigid rod threading through a small fixed ring while the ring can freely rotate. We derive the distribution function for the sliding displacement and the unit vector along the rod both at equilibrium and non-equilibrium. The equilibrium distribution is quadratic in the sliding displacement and is controlled by the moment of inertia (mass distribution). Applying the Onsager variational principle, we derive a Smoluchowski equation in which sliding and rotational diffusion are coupled. The mean square displacement (MSD) of sliding shows a metastable plateau in a certain time range before it approaches the final equilibrium value. The longest sliding relaxation time scales as $α^{-1/2}$, where $α$ is the dimensionless moment of inertia of the rod. The rotational relaxation time obtained from the orientational correlation function is longer than that of a rod with its center fixed but faster than a rod with one end fixed. These results may be useful in understanding the dynamics of polymers connected by sliding rings.

cond-mat.soft↗

Fokker-Planck description of an active Brownian particle with rotational inertia

We develop a perturbative framework to calculate the mean-squared displacement (MSD) of active Brownian particles (ABPs) with a finite moment of inertia. Starting from the corresponding Fokker-Planck equation, we employ a Fourier transform for the spatial coordinates and Hermite polynomials as eigenfunctions for the angular velocity, which enables a systematic perturbative expansion of the MSD order by order. By resumming the resulting series in Laplace space and performing the inverse transform, we obtain an explicit expression for the MSD as a function of the moment of inertia. The analytical results are further validated by comparison with numerical simulations.

cond-mat.stat-mech↗

Ornstein-Uhlenbeck information particle: A new candidate of active agent

An information particle can acquire active-like motion through transforming the information entropy into effective self-propulsion velocity/force using the attached information engine. We consider an underdamped Brownian particle additionally driven by either a constant self-propulsion force or an information engine using Ornstein-Uhlenbeck (OU) bath feedback control, such particles are called self-propelled particle (SPP) or OU information particle (OUIP). Compared to the widely-investigated SPP, the OUIP shows a significant different dynamical pattern, including two types of moving mode: a slow-speed diffusion mode and a high-speed traveling mode. The specific evolution of OUIP can be adjusted flexibly between such two modes through the inertial effect, thus acquiring a rich and non-trivial motion behavior. By tuning the strength of fluctuation of the OU bath, a wide range of net velocity can be achieved for OUIP. We highlight that OUIP could be an exceptional candidate for active agent.

cond-mat.stat-mech↗

Higher-codimension points as organizing centers in nonreciprocal pattern-forming systems with O(2)-symmetry

Focusing on a two-field Swift-Hohenberg model with linear nonreciprocal interactions, this study investigates how emerging higher-codimension points act as organizing centers for the nonequilibrium phase diagram that features various steady and dynamic phases. Complementing the numerical analysis of the field equations with time simulations and path continuation techniques, we derive a reduced dynamical system corresponding to a one-mode approximation for the critical-wavenumber modes. Furthermore, we derive the normal form equations that are valid in the vicinity of the Takens-Bogdanov bifurcation with O(2)-symmetry, which allows us to draw on corresponding literature results. Comparing results obtained on the different levels of description, we discuss the bifurcation structure relating trivial uniform and inhomogeneous steady states as well as traveling, standing and modulated waves. We also contextualize the relevance of recently highlighted features of the linear mode structure, i.e., of the dispersion relations, termed "critical exceptional points" for the transitions between the nonequilibrium phases.

nlin.PS↗

Thermally driven two-sphere microswimmer with internal feedback control

We discuss the locomotion of a thermally driven elastic two-sphere microswimmer with internal feedback control that is realized by the position-dependent friction coefficients. In our model, the two spheres are in equilibrium with independent heat baths having different temperatures, causing a heat flow between the two spheres. We generally show that the average velocity of the microswimmer is nonzero when the friction coefficients are position-dependent. Using the method of stochastic thermodynamics, we obtain the entropy production rate and discuss the efficiency of the two-sphere microswimmer. The proposed self-propulsion mechanism highlights the importance of information in active matter and can be a fundamental process in various biological systems.

cond-mat.soft↗

Ornstein-Uhlenbeck information swimmers with external and internal feedback controls

Using an underdamped active Ornstein-Uhlenbeck particle, we propose two information swimmer models having either external or internal feedback control and perform their numerical simulations. Depending on the velocity that is measured after every fixed time interval (measurement time), the friction coefficient is modified in the externally controlled model, whereas the persistence time for the activity is changed in the internally controlled one. In the steady state, both of these information swimmers acquire finite average velocities in the noisy environment, and the efficiency can be maximized by tuning the measurement time. The internally controlled swimmer can generally achieve a larger velocity and efficiency than the externally controlled one when the active fluctuation is large.

cond-mat.soft↗

Pattern dynamics of the nonreciprocal Swift-Hohenberg model

We investigate the pattern dynamics of the one-dimensional nonreciprocal Swift-Hohenberg model. Characteristic spatiotemporal patterns such as disordered, aligned, swap, chiral-swap, and chiral phases emerge depending on the parameters. We classify the characteristic spatiotemporal patterns obtained in numerical simulation by focusing on the spatiotemporal Fourier spectrum of the order parameters. We derive a reduced dynamical system by using the spatial Fourier series expansion. We analyze the bifurcation structure around the fixed points corresponding to the aligned and chiral phases, and explain the transitions between them. The disordered phase is destabilized either to the aligned phase by the Turing bifurcation or to the chiral phase by the wave bifurcation, while the aligned phase and the chiral phase are connected by the pitchfork bifurcation.

nlin.PS↗

Diffusive dynamics of charge regulated macro-ion solutions

Onsager's variational principle is generalized to address the diffusive dynamics of an electrolyte solution composed of charge-regulated macro-ions and counterions. The free energy entering the Rayleighian corresponds to the Poisson-Boltzmann theory augmented by the charge-regulation mechanism. The dynamical equations obtained by minimizing the Rayleighian include the classical Poisson-Nernst-Planck equations, the Debye-Falkenhagen equation, and their modifications in the presence of charge regulation. By analyzing the steady state, we show that the charge regulation has an important impact on the non-equilibrium macro-ion spatial distribution and their effective charge, deviating significantly from their equilibrium values. Our model, based on Onsager's variational principle offers a unified approach to the diffusive dynamics of electrolytes containing components that undergo various charge association/dissociation processes.

cond-mat.soft↗