arXiv subjects

Shin Yoo

Publications and source records attributed to Shin Yoo.

At least 55 records · Page 3Linked to original sources

arXiv2023

Repairing DNN Architecture: Are We There Yet?

As Deep Neural Networks (DNNs) are rapidly being adopted within large software systems, software developers are increasingly required to design, train, and deploy such models into the systems they develop. Consequently, testing and improving the robustness of these models have received a lot of attention lately. However, relatively little effort has been made to address the difficulties developers experience when designing and training such models: if the evaluation of a model shows poor performance after the initial training, what should the developer change? We survey and evaluate existing state-of-the-art techniques that can be used to repair model performance, using a benchmark of both real-world mistakes developers made while designing DNN models and artificial faulty models generated by mutating the model code. The empirical evaluation shows that random baseline is comparable with or sometimes outperforms existing state-of-the-art techniques. However, for larger and more complicated models, all repair techniques fail to find fixes. Our findings call for further research to develop more sophisticated techniques for Deep Learning repair.

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arXiv2022

A Bayesian Framework for Automated Debugging

Debugging takes up a significant portion of developer time. As a result, automated debugging techniques including Fault Localization (FL) and Automated Program Repair (APR) have garnered significant attention due to their potential to aid developers in debugging tasks. Despite intensive research on these subjects, we are unaware of a theoretic framework that highlights the principles behind automated debugging and allows abstract analysis of techniques. Such a framework would heighten our understanding of the endeavor and provide a way to formally analyze techniques and approaches. To this end, we first propose a Bayesian framework of understanding automated repair and find that in conjunction with a concrete statement of the objective of automated debugging, we can recover maximal fault localization formulae from prior work, as well as analyze existing APR techniques and their underlying assumptions. As a means of empirically demonstrating our framework, we further propose BAPP, a Bayesian Patch Prioritization technique that incorporates intermediate program values to analyze likely patch locations and repair actions, with its core equations being derived by our Bayesian framework. We find that incorporating program values allows BAPP to identify correct patches more precisely: when applied to the patches generated by kPAR, the rankings produced by BAPP reduce the number of required patch validation by 68% and consequently reduce the repair time by 34 minutes on average. Further, BAPP improves the precision of FL, increasing acc@5 on the studied bugs from 8 to 11. These results highlight the potential of value-cognizant automated debugging techniques, and further validates our theoretical framework. Finally, future directions that the framework suggests are provided.

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arXiv2022

Arachne: Search Based Repair of Deep Neural Networks

The rapid and widespread adoption of Deep Neural Networks (DNNs) has called for ways to test their behaviour, and many testing approaches have successfully revealed misbehaviour of DNNs. However, it is relatively unclear what one can do to correct such behaviour after revelation, as retraining involves costly data collection and does not guarantee to fix the underlying issue. This paper introduces Arachne, a novel program repair technique for DNNs, which directly repairs DNNs using their input-output pairs as a specification. Arachne localises neural weights on which it can generate effective patches and uses Differential Evolution to optimise the localised weights and correct the misbehaviour. An empirical study using different benchmarks shows that Arachne can fix specific misclassifications of a DNN without reducing general accuracy significantly. On average, patches generated by Arachne generalise to 61.3% of unseen misbehaviour, whereas those by a state-of-the-art DNN repair technique generalise only to 10.2% and sometimes to none while taking tens of times more than Arachne. We also show that Arachne can address fairness issues by debiasing a gender classification model. Finally, we successfully apply Arachne to a text sentiment model to show that it generalises beyond Convolutional Neural Networks.

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arXiv2022

FDG: A Precise Measurement of Fault Diagnosability Gain of Test Cases

The performance of many Fault Localisation (FL) techniques directly depends on the quality of the used test suites. Consequently, it is extremely useful to be able to precisely measure how much diagnostic power each test case can introduce when added to a test suite used for FL. Such a measure can help us not only to prioritise and select test cases to be used for FL, but also to effectively augment test suites that are too weak to be used with FL techniques. We propose FDG, a new measure of Fault Diagnosability Gain for individual test cases. The design of FDG is based on our analysis of existing metrics that are designed to prioritise test cases for better FL. Unlike other metrics, FDG exploits the ongoing FL results to emphasise the parts of the program for which more information is needed. Our evaluation of FDG with Defects4J shows that it can successfully help the augmentation of test suites for better FL. When given only a few failing test cases (2.3 test cases on average), FDG can effectively augment the given test suite by prioritising the test cases generated automatically by EvoSuite: the augmentation can improve the acc@1 and acc@10 of the FL results by 11.6x and 2.2x on average, after requiring only ten human judgements on the correctness of the assertions EvoSuite generates.

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arXiv2022

GLAD: Neural Predicate Synthesis to Repair Omission Faults

Existing template and learning-based APR tools have successfully found patches for many benchmark faults. However, our analysis of existing results shows that omission faults pose a significant challenge to these techniques. For template based approaches, omission faults provide no location to apply templates to; for learning based approaches that formulate repair as Neural Machine Translation (NMT), omission faults similarly do not provide the faulty code to translate. To address these issues, we propose GLAD, a novel learning-based repair technique that specifically targets if-clause synthesis. GLAD does not require a faulty line as it is based on generative Language Models (LMs) instead of machine translation; consequently, it can repair omission faults. GLAD intelligently constrains the language model using a type-based grammar. Further, it efficiently reduces the validation cost by performing dynamic ranking of candidate patches using a debugger. Thanks to the shift from translation to synthesis, GLAD is highly orthogonal to existing techniques: GLAD can correctly fix 16 Defects4J v1.2 faults that previous NMT-based techniques could not, while maintaining a reasonable runtime cost, underscoring its utility as an APR tool and potential to complement existing tools in practice. An inspection of the bugs that GLAD fixes reveals that GLAD can quickly generate expressions that would be challenging for other techniques.

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arXiv2022

Predictive Mutation Analysis via Natural Language Channel in Source Code

Mutation analysis can provide valuable insights into both System Under Test (SUT) and its test suite. However, it is not scalable due to the cost of building and testing a large number of mutants. Predictive Mutation Testing (PMT) has been proposed to reduce the cost of mutation testing, but it can only provide statistical inference about whether a mutant will be killed or not by the entire test suite. We propose Seshat, a Predictive Mutation Analysis (PMA) technique that can accurately predict the entire kill matrix, not just the mutation score of the given test suite. Seshat exploits the natural language channel in code, and learns the relationship between the syntactic and semantic concepts of each test case and the mutants it can kill, from a given kill matrix. The learnt model can later be used to predict the kill matrices for subsequent versions of the program, even after both the source and test code have changed significantly. Empirical evaluation using the programs in the Defects4J shows that Seshat can predict kill matrices with the average F-score of 0.83 for versions that are up to years apart. This is an improvement of F-score by 0.14 and 0.45 point over the state-of-the-art predictive mutation testing technique, and a simple coverage based heuristic, respectively. Seshat also performs as well as PMT for the prediction of mutation scores only. Once Seshat trains its model using a concrete mutation analysis, the subsequent predictions made by Seshat are on average 39 times faster than actual test-based analysis.

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arXiv2021

Ahead of Time Mutation Based Fault Localisation using Statistical Inference

Mutation analysis can effectively capture the dependency between source code and test results. This has been exploited by Mutation Based Fault Localisation (MBFL) techniques. However, MBFL techniques suffer from the need to expend the high cost of mutation analysis after the observation of failures, which may present a challenge for its practical adoption. We introduce SIMFL (Statistical Inference for Mutation-based Fault Localisation), an MBFL technique that allows users to perform the mutation analysis in advance before a failure is observed, allowing the amortisation of the analysis cost. SIMFL uses mutants as artificial faults and aims to learn the failure patterns among test cases against different locations of mutations. Once a failure is observed, SIMFL requires either almost no or very small additional cost for analysis, depending on the used inference model. An empirical evaluation using Defects4J shows that SIMFL can successfully localise up to 113 out of 203 studied faults (55%) at the top, and 159 (78%) faults within the top five, significantly outperforming existing MBFL techniques while using the results of mutation analysis that has been undertaken before the test failure. The amortised cost of mutation analysis can be further reduced by mutation sampling: SIMFL retains 80% of its localisation accuracy at the top rank when using only 10% of generated mutants, compared to results obtained without sampling.

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arXiv2021

Searching for Multi-Fault Programs in Defects4J

Defects4J has enabled numerous software testing and debugging research work since its introduction. A large part of its contribution, and the resulting popularity, lies in the clear separation and distillation of the root cause of each individual test failure based on careful manual analysis, which in turn allowed researchers to easily study individual faults in isolation. However, in a realistic debugging scenario, multiple faults can coexist and affect test results collectively. Study of automated debugging techniques for these situations, such as failure clustering or fault localisation for multiple faults, would significantly benefit from a reliable benchmark of multiple, coexisting faults. We search for versions of Defects4J subjects that contain multiple faults, by iteratively transplanting fault-revealing test cases across Defects4J versions. Out of 326 studied versions of Defects4J subjects, we report that over 95% (311 versions) actually contain from two to 24 faults. We hope that the extended, multi-fault Defects4J can provide a platform for future research of testing and debugging techniques for multi-fault programs.

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arXiv2021

Effectively Sampling Higher Order Mutants Using Causal Effect

Higher Order Mutation (HOM) has been proposed to avoid equivalent mutants and improve the scalability of mutation testing, but generating useful HOMs remain an expensive search problem on its own. We propose a new approach to generate Strongly Subsuming Higher Order Mutants (SSHOM) using a recently introduced Causal Program Dependence Analysis (CPDA). CPDA itself is based on program mutation, and provides quantitative estimation of how often a change of the value of a program element will cause a value change of another program element. Our SSHOM generation approach chooses pairs of program elements using heuristics based on CPDA analysis, performs First Order Mutation to the chosen pairs, and generates an HOM by combining two FOMs.

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arXiv2021

Improving Test Distance for Failure Clustering with Hypergraph Modelling

Automated debugging techniques, such as Fault Localisation (FL) or Automated Program Repair (APR), are typically designed under the Single Fault Assumption (SFA). However, in practice, an unknown number of faults can independently cause multiple test case failures, making it difficult to allocate resources for debugging and to use automated debugging techniques. Clustering algorithms have been applied to group the test failures according to their root causes, but their accuracy can often be lacking due to the inherent limits in the distance metrics for test cases. We introduce a new test distance metric based on hypergraphs and evaluate their accuracy using multi-fault benchmarks that we have built on top of Defects4J and SIR. Results show that our technique, Hybiscus, can automatically achieve perfect clustering (i.e., the same number of clusters as the ground truth number of root causes, with all failing tests with the same root cause grouped together) for 418 out of 605 test runs with multiple test failures. Better failure clustering also allows us to separate different root causes and apply FL techniques under SFA, resulting in saving up to 82% of the total wasted effort when compared to the state-of-the-art technique for multiple fault localisation.

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arXiv2021

Causal Program Dependence Analysis

We introduce Causal Program Dependence Analysis (CPDA), a dynamic dependence analysis that applies causal inference to model the strength of program dependence relations in a continuous space. CPDA observes the association between program elements by constructing and executing modified versions of a program. One advantage of CPDA is that this construction requires only light-weight parsing rather than sophisticated static analysis. The result is a collection of observations based on how often a change in the value produced by a mutated program element affects the behavior of other elements. From this set of observations, CPDA discovers a causal structure capturing the causal (i.e., dependence) relation between program elements. Qualitative evaluation finds that CPDA concisely expresses key dependence relationships between program elements. As an example application, we apply CPDA to the problem of fault localization. Using minimal test suites, our approach can rank twice as many faults compared to SBFL.

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arXiv2020

Reducing DNN Labelling Cost using Surprise Adequacy: An Industrial Case Study for Autonomous Driving

Deep Neural Networks (DNNs) are rapidly being adopted by the automotive industry, due to their impressive performance in tasks that are essential for autonomous driving. Object segmentation is one such task: its aim is to precisely locate boundaries of objects and classify the identified objects, helping autonomous cars to recognise the road environment and the traffic situation. Not only is this task safety critical, but developing a DNN based object segmentation module presents a set of challenges that are significantly different from traditional development of safety critical software. The development process in use consists of multiple iterations of data collection, labelling, training, and evaluation. Among these stages, training and evaluation are computation intensive while data collection and labelling are manual labour intensive. This paper shows how development of DNN based object segmentation can be improved by exploiting the correlation between Surprise Adequacy (SA) and model performance. The correlation allows us to predict model performance for inputs without manually labelling them. This, in turn, enables understanding of model performance, more guided data collection, and informed decisions about further training. In our industrial case study the technique allows cost savings of up to 50% with negligible evaluation inaccuracy. Furthermore, engineers can trade off cost savings versus the tolerable level of inaccuracy depending on different development phases and scenarios.

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arXiv2020

Genetic Improvement @ ICSE 2020

Following Prof. Mark Harman of Facebook's keynote and formal presentations (which are recorded in the proceedings) there was a wide ranging discussion at the eighth international Genetic Improvement workshop, GI-2020 @ ICSE (held as part of the 42nd ACM/IEEE International Conference on Software Engineering on Friday 3rd July 2020). Topics included industry take up, human factors, explainabiloity (explainability, justifyability, exploitability) and GI benchmarks. We also contrast various recent online approaches (e.g. SBST 2020) to holding virtual computer science conferences and workshops via the WWW on the Internet without face-2-face interaction. Finally we speculate on how the Coronavirus Covid-19 Pandemic will affect research next year and into the future.

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arXiv2020

Pandemic Programming: How COVID-19 affects software developers and how their organizations can help

Context. As a novel coronavirus swept the world in early 2020, thousands of software developers began working from home. Many did so on short notice, under difficult and stressful conditions. Objective. This study investigates the effects of the pandemic on developers' wellbeing and productivity. Method. A questionnaire survey was created mainly from existing, validated scales and translated into 12 languages. The data was analyzed using non-parametric inferential statistics and structural equation modeling. Results. The questionnaire received 2225 usable responses from 53 countries. Factor analysis supported the validity of the scales and the structural model achieved a good fit (CFI = 0.961, RMSEA = 0.051, SRMR = 0.067). Confirmatory results include: (1) the pandemic has had a negative effect on developers' wellbeing and productivity; (2) productivity and wellbeing are closely related; (3) disaster preparedness, fear related to the pandemic and home office ergonomics all affect wellbeing or productivity. Exploratory analysis suggests that: (1) women, parents and people with disabilities may be disproportionately affected; (2) different people need different kinds of support. Conclusions. To improve employee productivity, software companies should focus on maximizing employee wellbeing and improving the ergonomics of employees' home offices. Women, parents and disabled persons may require extra support.

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arXiv2020

SINVAD: Search-based Image Space Navigation for DNN Image Classifier Test Input Generation

The testing of Deep Neural Networks (DNNs) has become increasingly important as DNNs are widely adopted by safety critical systems. While many test adequacy criteria have been suggested, automated test input generation for many types of DNNs remains a challenge because the raw input space is too large to randomly sample or to navigate and search for plausible inputs. Consequently, current testing techniques for DNNs depend on small local perturbations to existing inputs, based on the metamorphic testing principle. We propose new ways to search not over the entire image space, but rather over a plausible input space that resembles the true training distribution. This space is constructed using Variational Autoencoders (VAEs), and navigated through their latent vector space. We show that this space helps efficiently produce test inputs that can reveal information about the robustness of DNNs when dealing with realistic tests, opening the field to meaningful exploration through the space of highly structured images.

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arXiv2018

Mining Fix Patterns for FindBugs Violations

In this paper, we first collect and track a large number of fixed and unfixed violations across revisions of software. The empirical analyses reveal that there are discrepancies in the distributions of violations that are detected and those that are fixed, in terms of occurrences, spread and categories, which can provide insights into prioritizing violations. To automatically identify patterns in violations and their fixes, we propose an approach that utilizes convolutional neural networks to learn features and clustering to regroup similar instances. We then evaluate the usefulness of the identified fix patterns by applying them to unfixed violations. The results show that developers will accept and merge a majority (69/116) of fixes generated from the inferred fix patterns. It is also noteworthy that the yielded patterns are applicable to four real bugs in the Defects4J major benchmark for software testing and automated repair.

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arXiv2018

Guiding Deep Learning System Testing using Surprise Adequacy

Deep Learning (DL) systems are rapidly being adopted in safety and security critical domains, urgently calling for ways to test their correctness and robustness. Testing of DL systems has traditionally relied on manual collection and labelling of data. Recently, a number of coverage criteria based on neuron activation values have been proposed. These criteria essentially count the number of neurons whose activation during the execution of a DL system satisfied certain properties, such as being above predefined thresholds. However, existing coverage criteria are not sufficiently fine grained to capture subtle behaviours exhibited by DL systems. Moreover, evaluations have focused on showing correlation between adversarial examples and proposed criteria rather than evaluating and guiding their use for actual testing of DL systems. We propose a novel test adequacy criterion for testing of DL systems, called Surprise Adequacy for Deep Learning Systems (SADL), which is based on the behaviour of DL systems with respect to their training data. We measure the surprise of an input as the difference in DL system's behaviour between the input and the training data (i.e., what was learnt during training), and subsequently develop this as an adequacy criterion: a good test input should be sufficiently but not overtly surprising compared to training data. Empirical evaluation using a range of DL systems from simple image classifiers to autonomous driving car platforms shows that systematic sampling of inputs based on their surprise can improve classification accuracy of DL systems against adversarial examples by up to 77.5% via retraining.

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arXiv2018

Empirical Evaluation of Mutation-based Test Prioritization Techniques

We propose a new test case prioritization technique that combines both mutation-based and diversity-based approaches. Our diversity-aware mutation-based technique relies on the notion of mutant distinguishment, which aims to distinguish one mutant's behavior from another, rather than from the original program. We empirically investigate the relative cost and effectiveness of the mutation-based prioritization techniques (i.e., using both the traditional mutant kill and the proposed mutant distinguishment) with 352 real faults and 553,477 developer-written test cases. The empirical evaluation considers both the traditional and the diversity-aware mutation criteria in various settings: single-objective greedy, hybrid, and multi-objective optimization. The results show that there is no single dominant technique across all the studied faults. To this end, \rev{we we show when and the reason why each one of the mutation-based prioritization criteria performs poorly, using a graphical model called Mutant Distinguishment Graph (MDG) that demonstrates the distribution of the fault detecting test cases with respect to mutant kills and distinguishment.

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