arXiv subjects

Shingo Urata

Publications and source records attributed to Shingo Urata.

5 recordsLinked to original sources

arXiv2023

Microscopic mechanism of structural and volume relaxation below glass transition temperature in a soda-lime silicate glass revealed by Raman spectroscopy and its first principle calculations

To elucidate the atomistic origin of volume relaxation in soda-lime silicate glass annealed below the glass transition temperature (Tg), the experimental and calculated Raman spectra were compared. By decomposing the calculated Raman spectra into a specific group of atoms, we found that the Raman peak at 1050 cm-1 corresponds to bridging oxygen with a small Si-O-Si bond angle. The experimental Raman spectra indicated that, during annealing below Tg, a homogenization reaction Q2+Q4->2Q3 proceeds in the early stage of structural relaxation. Then, the Si-O-Si units with relatively small angles decrease even in the later stages, which is first evidence of ring deformation causing volume relaxation of soda-lime silicate glass because decreasing small Si-O-Si angles corresponds to the reduce of acute O-O-O angle in a ring and can expand the space inside the rings, and Na can be inserted into the ring center. In conclusion the ring deformation and Na displacement is the origin of the volume relaxation of soda-lime silicate glass below Tg.

cond-mat.mtrl-sci↗

arXiv2023

Single-model uncertainty quantification in neural network potentials does not consistently outperform model ensembles

Neural networks (NNs) often assign high confidence to their predictions, even for points far out-of-distribution, making uncertainty quantification (UQ) a challenge. When they are employed to model interatomic potentials in materials systems, this problem leads to unphysical structures that disrupt simulations, or to biased statistics and dynamics that do not reflect the true physics. Differentiable UQ techniques can find new informative data and drive active learning loops for robust potentials. However, a variety of UQ techniques, including newly developed ones, exist for atomistic simulations and there are no clear guidelines for which are most effective or suitable for a given case. In this work, we examine multiple UQ schemes for improving the robustness of NN interatomic potentials (NNIPs) through active learning. In particular, we compare incumbent ensemble-based methods against strategies that use single, deterministic NNs: mean-variance estimation, deep evidential regression, and Gaussian mixture models. We explore three datasets ranging from in-domain interpolative learning to more extrapolative out-of-domain generalization challenges: rMD17, ammonia inversion, and bulk silica glass. Performance is measured across multiple metrics relating model error to uncertainty. Our experiments show that none of the methods consistently outperformed each other across the various metrics. Ensembling remained better at generalization and for NNIP robustness; MVE only proved effective for in-domain interpolation, while GMM was better out-of-domain; and evidential regression, despite its promise, was not the preferable alternative in any of the cases. More broadly, cost-effective, single deterministic models cannot yet consistently match or outperform ensembling for uncertainty quantification in NNIPs.

cs.LG↗

arXiv2022

Modeling Short-Range and Three-Membered Ring Structures in Lithium Borosilicate Glasses using Machine Learning Potential

Lithium borosilicate (LBS) glass is a prototypical lithium-ion conducting oxide glasses available for an all-solid state buttery. Nevertheless, the atomistic modeling of LBS glass using $ab$ $initio$ (AIMD) and classical molecular dynamics (CMD) simulations have critical limitations due to computational cost and inaccuracy in reproducing the glass microstructures, respectively. To overcome these difficulties, a machine-learning potential (MLP) was examined in this work for modeling LBS glasses using DeepMD. The glass structures obtained by this MLP possessed fourhold-coordinated boron ($^4$B) confirmed well with the experimental data and abundance of three-membered rings. The models were energetically more stable compared with those constructed with a functional force-field even though both the models included reasonable $^4$B. The results confirmed MLP to be superior to model the boron-containing glasses and address the inherent shortcomings of the AIMD and CMD. This study also discusses some limitations of MLP for modeling glasses.

cond-mat.mtrl-sci↗

arXiv2021

Graph theory-based structural analysis on density anomaly of silica glass

Analyzing the atomic structure of glassy materials is a tremendous challenge both experimentally and computationally, and the lack of direct, detailed insights into glass structure hinders our ability to navigate structure-property relationships. For instance, the structural origin of the density anomaly in silica glasses - the negative thermal expansion coefficient - is still poorly understood. Simulations based on molecular dynamics (MD) produce atomically resolved structures, but quantifying the role of disorder in the density anomaly is challenging. Here, we propose to use a a graph-theoretical approach to assess topological differences between disordered structural arrangements from MD trajectories of silica glasses. A graph similarity metric quantifies the similarity between the covalent networks and can characterize the nature of the disordered solid, by comparing to reference crystalline solids, or with glasses in different thermodynamic states . This approach involves casting all-atom glass configurations as networks, and subsequently applying a graph-similarity metric (D-measure). Calculated D-measure values are then taken as the topological distances between two configurations. By measuring the topological distances of silica glass configurations across a range of temperatures, distinct structural features could be observed at temperatures higher than the fictive temperature. In addition, we compared topological distances between local atomic environments in the glass and crystalline silica phases. This approach suggests that more coesite-like and quartz-like local structures emerge in silica glasses when the density is at a minimum during the heating process.

cond-mat.mtrl-sci↗

arXiv2019

Coupling Finite Element Method with Large Scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) for Hierarchical Multiscale Simulations

In this work, we have developed a multiscale computational algorithm to couple finite element method with an open source molecular dynamics code --- the Large scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) --- to perform hierarchical multiscale simulations in highly scalable parallel computations. The algorithm was firstly verified by performing simulations of single crystal copper deformation, and a good agreement with the well-established method was confirmed. Then, we applied the multiscale method to simulate mechanical responses of a polymeric material composed of multi-million fine scale atoms inside the representative unit cells (r-cell) against uniaxial loading. It was observed that the method can successfully capture plastic deformation in the polymer at macroscale, and reproduces the double yield points typical in polymeric materials, strain localization and necking deformation after the second yield point. In addition, parallel scalability of the multiscale algorithm was examined up to around 100 thousand processors with 10 million particles, and an almost ideal strong scaling was achieved thanks to LAMMPS parallel architecture.

cond-mat.soft↗