arXiv subjects

Shinjae Yoo

Publications and source records attributed to Shinjae Yoo.

At least 55 records · Page 3Linked to original sources

arXiv2025

Revisiting Your Memory: Reconstruction of Affect-Contextualized Memory via EEG-guided Audiovisual Generation

In this paper, we introduce RevisitAffectiveMemory, a novel task designed to reconstruct autobiographical memories through audio-visual generation guided by affect extracted from electroencephalogram (EEG) signals. To support this pioneering task, we present the EEG-AffectiveMemory dataset, which encompasses textual descriptions, visuals, music, and EEG recordings collected during memory recall from nine participants. Furthermore, we propose RYM (Revisit Your Memory), a three-stage framework for generating synchronized audio-visual contents while maintaining dynamic personal memory affect trajectories. Experimental results demonstrate our method successfully decodes individual affect dynamics trajectories from neural signals during memory recall (F1=0.9). Also, our approach faithfully reconstructs affect-contextualized audio-visual memory across all subjects, both qualitatively and quantitatively, with participants reporting strong affective concordance between their recalled memories and the generated content. Especially, contents generated from subject-reported affect dynamics showed higher correlation with participants' reported affect dynamics trajectories (r=0.265, p<.05) and received stronger user preference (preference=56%) compared to those generated from randomly reordered affect dynamics. Our approaches advance affect decoding research and its practical applications in personalized media creation via neural-based affect comprehension. Codes and the dataset are available at https://github.com/ioahKwon/Revisiting-Your-Memory.

cs.AI↗

arXiv2025

Quantum Reinforcement Learning by Adaptive Non-local Observables

Hybrid quantum-classical frameworks leverage quantum computing for machine learning; however, variational quantum circuits (VQCs) are limited by the need for local measurements. We introduce an adaptive non-local observable (ANO) paradigm within VQCs for quantum reinforcement learning (QRL), jointly optimizing circuit parameters and multi-qubit measurements. The ANO-VQC architecture serves as the function approximator in Deep Q-Network (DQN) and Asynchronous Advantage Actor-Critic (A3C) algorithms. On multiple benchmark tasks, ANO-VQC agents outperform baseline VQCs. Ablation studies reveal that adaptive measurements enhance the function space without increasing circuit depth. Our results demonstrate that adaptive multi-qubit observables can enable practical quantum advantages in reinforcement learning.

quant-ph↗

arXiv2025

Problem-dependent convergence bounds for randomized linear gradient compression

In distributed optimization, the communication of model updates can be a performance bottleneck. Consequently, gradient compression has been proposed as a means of increasing optimization throughput. In general, due to information loss, compression introduces a penalty on the number of iterations needed to reach a solution. In this work, we investigate how the iteration penalty depends on the interaction between compression and problem structure, in the context of non-convex stochastic optimization. We focus on linear schemes, where compression and decompression can be modeled as multiplication with a random matrix. We consider several distributions of matrices, among them Haar-distributed orthogonal matrices and matrices with random Gaussian entries. We find that the impact of compression on convergence can be quantified in terms of a smoothness matrix associated with the objective function, using a norm defined by the compression scheme. The analysis reveals that in certain cases, compression performance is related to low-rank structure or other spectral properties of the problem and our bounds predict that the penalty introduced by compression is significantly reduced compared to worst-case bounds that only consider the compression level, ignoring problem data. We verify the theoretical findings experimentally, including fine-tuning an image classification model.

math.OC↗

arXiv2025

Transfer Learning Analysis of Variational Quantum Circuits

This work analyzes transfer learning of the Variational Quantum Circuit (VQC). Our framework begins with a pretrained VQC configured in one domain and calculates the transition of 1-parameter unitary subgroups required for a new domain. A formalism is established to investigate the adaptability and capability of a VQC under the analysis of loss bounds. Our theory observes knowledge transfer in VQCs and provides a heuristic interpretation for the mechanism. An analytical fine-tuning method is derived to attain the optimal transition for adaptations of similar domains.

quant-ph↗

arXiv2025

Adaptive Non-local Observable on Quantum Neural Networks

Conventional Variational Quantum Circuits (VQCs) for Quantum Machine Learning typically rely on a fixed Hermitian observable, often built from Pauli operators. Inspired by the Heisenberg picture, we propose an adaptive non-local measurement framework that substantially increases the model complexity of the quantum circuits. Our introduction of dynamical Hermitian observables with evolving parameters shows that optimizing VQC rotations corresponds to tracing a trajectory in the observable space. This viewpoint reveals that standard VQCs are merely a special case of the Heisenberg representation. Furthermore, we show that properly incorporating variational rotations with non-local observables enhances qubit interaction and information mixture, admitting flexible circuit designs. Two non-local measurement schemes are introduced, and numerical simulations on classification tasks confirm that our approach outperforms conventional VQCs, yielding a more powerful and resource-efficient approach as a Quantum Neural Network.

quant-ph↗

arXiv2025

Maximal Update Parametrization and Zero-Shot Hyperparameter Transfer for Fourier Neural Operators

Fourier Neural Operators (FNOs) offer a principled approach for solving complex partial differential equations (PDEs). However, scaling them to handle more complex PDEs requires increasing the number of Fourier modes, which significantly expands the number of model parameters and makes hyperparameter tuning computationally impractical. To address this, we introduce $μ$Transfer-FNO, a zero-shot hyperparameter transfer technique that enables optimal configurations, tuned on smaller FNOs, to be directly applied to billion-parameter FNOs without additional tuning. Building on the Maximal Update Parametrization ($μ$P) framework, we mathematically derive a parametrization scheme that facilitates the transfer of optimal hyperparameters across models with different numbers of Fourier modes in FNOs, which is validated through extensive experiments on various PDEs. Our empirical study shows that Transfer-FNO reduces computational cost for tuning hyperparameters on large FNOs while maintaining or improving accuracy.

cs.LG↗

arXiv2025

Towards an Introspective Dynamic Model of Globally Distributed Computing Infrastructures

Large-scale scientific collaborations like ATLAS, Belle II, CMS, DUNE, and others involve hundreds of research institutes and thousands of researchers spread across the globe. These experiments generate petabytes of data, with volumes soon expected to reach exabytes. Consequently, there is a growing need for computation, including structured data processing from raw data to consumer-ready derived data, extensive Monte Carlo simulation campaigns, and a wide range of end-user analysis. To manage these computational and storage demands, centralized workflow and data management systems are implemented. However, decisions regarding data placement and payload allocation are often made disjointly and via heuristic means. A significant obstacle in adopting more effective heuristic or AI-driven solutions is the absence of a quick and reliable introspective dynamic model to evaluate and refine alternative approaches. In this study, we aim to develop such an interactive system using real-world data. By examining job execution records from the PanDA workflow management system, we have pinpointed key performance indicators such as queuing time, error rate, and the extent of remote data access. The dataset includes five months of activity. Additionally, we are creating a generative AI model to simulate time series of payloads, which incorporate visible features like category, event count, and submitting group, as well as hidden features like the total computational load-derived from existing PanDA records and computing site capabilities. These hidden features, which are not visible to job allocators, whether heuristic or AI-driven, influence factors such as queuing times and data movement.

cs.DC↗

arXiv2025

Spatiotemporal Learning of Brain Dynamics from fMRI Using Frequency-Specific Multi-Band Attention for Cognitive and Psychiatric Applications

Understanding how the brain's complex nonlinear dynamics give rise to cognitive function remains a central challenge in neuroscience. While brain functional dynamics exhibits scale-free and multifractal properties across temporal scales, conventional neuroimaging analytics assume linearity and stationarity, failing to capture frequency-specific neural computations. Here, we introduce Multi-Band Brain Net (MBBN), the first transformer-based framework to explicitly model frequency-specific spatiotemporal brain dynamics from fMRI. MBBN integrates biologically-grounded frequency decomposition with multi-band self-attention mechanisms, enabling discovery of previously undetectable frequency-dependent network interactions. Trained on 49,673 individuals across three large-scale cohorts (UK Biobank, ABCD, ABIDE), MBBN sets a new state-of-the-art in predicting psychiatric and cognitive outcomes (depression, ADHD, ASD), showing particular strength in classification tasks with up to 52.5\% higher AUROC and provides a novel framework for predicting cognitive intelligence scores. Frequency-resolved analyses uncover disorder-specific signatures: in ADHD, high-frequency fronto-sensorimotor connectivity is attenuated and opercular somatosensory nodes emerge as dynamic hubs; in ASD, orbitofrontal-somatosensory circuits show focal high-frequency disruption together with enhanced ultra-low-frequency coupling between the temporo-parietal junction and prefrontal cortex. By integrating scale-aware neural dynamics with deep learning, MBBN delivers more accurate and interpretable biomarkers, opening avenues for precision psychiatry and developmental neuroscience.

q-bio.NC↗

arXiv2025

DIVER-0 : A Fully Channel Equivariant EEG Foundation Model

Electroencephalography (EEG) is a non-invasive technique widely used in brain-computer interfaces and clinical applications, yet existing EEG foundation models face limitations in modeling spatio-temporal brain dynamics and lack channel permutation equivariance, preventing robust generalization across diverse electrode configurations. To address these challenges, we propose DIVER-0, a novel EEG foundation model that demonstrates how full spatio-temporal attention-rather than segregated spatial or temporal processing-achieves superior performance when properly designed with Rotary Position Embedding (RoPE) for temporal relationships and binary attention biases for channel differentiation. We also introduce Sliding Temporal Conditional Positional Encoding (STCPE), which improves upon existing conditional positional encoding approaches by maintaining both temporal translation equivariance and channel permutation equivariance, enabling robust adaptation to arbitrary electrode configurations unseen during pretraining. Experimental results demonstrate that DIVER-0 achieves competitive performance with only 10% of pretraining data while maintaining consistent results across all channel permutation conditions, validating its effectiveness for cross-dataset generalization and establishing key design principles for handling the inherent heterogeneity of neural recording setups.

eess.SP↗

arXiv2025

Learning to Program Quantum Measurements for Machine Learning

The rapid advancements in quantum computing (QC) and machine learning (ML) have sparked significant interest, driving extensive exploration of quantum machine learning (QML) algorithms to address a wide range of complex challenges. The development of high-performance QML models requires expert-level expertise, presenting a key challenge to the widespread adoption of QML. Critical obstacles include the design of effective data encoding strategies and parameterized quantum circuits, both of which are vital for the performance of QML models. Furthermore, the measurement process is often neglected-most existing QML models employ predefined measurement schemes that may not align with the specific requirements of the targeted problem. We propose an innovative framework that renders the observable of a quantum system-specifically, the Hermitian matrix-trainable. This approach employs an end-to-end differentiable learning framework, enabling simultaneous optimization of the neural network used to program the parameterized observables and the standard quantum circuit parameters. Notably, the quantum observable parameters are dynamically programmed by the neural network, allowing the observables to adapt in real time based on the input data stream. Through numerical simulations, we demonstrate that the proposed method effectively programs observables dynamically within variational quantum circuits, achieving superior results compared to existing approaches. Notably, it delivers enhanced performance metrics, such as higher classification accuracy, thereby significantly improving the overall effectiveness of QML models.

quant-ph↗

arXiv2025

Addressing the Current Challenges of Quantum Machine Learning through Multi-Chip Ensembles

Practical Quantum Machine Learning (QML) is challenged by noise, limited scalability, and poor trainability in Variational Quantum Circuits (VQCs) on current hardware. We propose a multi-chip ensemble VQC framework that systematically overcomes these hurdles. By partitioning high-dimensional computations across ensembles of smaller, independently operating quantum chips and leveraging controlled inter-chip entanglement boundaries, our approach demonstrably mitigates barren plateaus, enhances generalization, and uniquely reduces both quantum error bias and variance simultaneously without additional mitigation overhead. This allows for robust processing of large-scale data, as validated on standard benchmarks (MNIST, FashionMNIST, CIFAR-10) and a real-world PhysioNet EEG dataset, aligning with emerging modular quantum hardware and paving the way for more scalable QML.

cs.LG↗

arXiv2025

Comparative Performance Evaluation of Large Language Models for Extracting Molecular Interactions and Pathway Knowledge

Background: Identification of the interactions and regulatory relations between biomolecules play pivotal roles in understanding complex biological systems and the mechanisms underlying diverse biological functions. However, the collection of such molecular interactions has heavily relied on expert curation in the past, making it labor-intensive and time-consuming. To mitigate these challenges, we propose leveraging the capabilities of large language models (LLMs) to automate genome-scale extraction of this crucial knowledge. Results: In this study, we investigate the efficacy of various LLMs in addressing biological tasks, such as the recognition of protein interactions, identification of genes linked to pathways affected by low-dose radiation, and the delineation of gene regulatory relationships. Overall, the larger models exhibited superior performance, indicating their potential for specific tasks that involve the extraction of complex interactions among genes and proteins. Although these models possessed detailed information for distinct gene and protein groups, they faced challenges in identifying groups with diverse functions and in recognizing highly correlated gene regulatory relationships. Conclusions: By conducting a comprehensive assessment of the state-of-the-art models using well-established molecular interaction and pathway databases, our study reveals that LLMs can identify genes/proteins associated with pathways of interest and predict their interactions to a certain extent. Furthermore, these models can provide important insights, marking a noteworthy stride toward advancing our understanding of biological systems through AI-assisted knowledge discovery.

cs.CL↗

arXiv2025

SCENT: Robust Spatiotemporal Learning for Continuous Scientific Data via Scalable Conditioned Neural Fields

Spatiotemporal learning is challenging due to the intricate interplay between spatial and temporal dependencies, the high dimensionality of the data, and scalability constraints. These challenges are further amplified in scientific domains, where data is often irregularly distributed (e.g., missing values from sensor failures) and high-volume (e.g., high-fidelity simulations), posing additional computational and modeling difficulties. In this paper, we present SCENT, a novel framework for scalable and continuity-informed spatiotemporal representation learning. SCENT unifies interpolation, reconstruction, and forecasting within a single architecture. Built on a transformer-based encoder-processor-decoder backbone, SCENT introduces learnable queries to enhance generalization and a query-wise cross-attention mechanism to effectively capture multi-scale dependencies. To ensure scalability in both data size and model complexity, we incorporate a sparse attention mechanism, enabling flexible output representations and efficient evaluation at arbitrary resolutions. We validate SCENT through extensive simulations and real-world experiments, demonstrating state-of-the-art performance across multiple challenging tasks while achieving superior scalability.

cs.LG↗

arXiv2025

Generalizable Implicit Neural Representations via Parameterized Latent Dynamics for Baroclinic Ocean Forecasting

Mesoscale ocean dynamics play a critical role in climate systems, governing heat transport, hurricane genesis, and drought patterns. However, simulating these processes at high resolution remains computationally prohibitive due to their nonlinear, multiscale nature and vast spatiotemporal domains. Implicit neural representations (INRs) reduce the computational costs as resolution-independent surrogates but fail in many-query scenarios (inverse modeling) requiring rapid evaluations across diverse parameters. We present PINROD, a novel framework combining dynamics-aware implicit neural representations with parameterized neural ordinary differential equations to address these limitations. By integrating parametric dependencies into latent dynamics, our method efficiently captures nonlinear oceanic behavior across varying boundary conditions and physical parameters. Experiments on ocean mesoscale activity data show superior accuracy over existing baselines and improved computational efficiency compared to standard numerical simulations.

cs.LG↗

arXiv2025

Alternative Mixed Integer Linear Programming Optimization for Joint Job Scheduling and Data Allocation in Grid Computing

This paper presents a novel approach to the joint optimization of job scheduling and data allocation in grid computing environments. We formulate this joint optimization problem as a mixed integer quadratically constrained program. To tackle the nonlinearity in the constraint, we alternatively fix a subset of decision variables and optimize the remaining ones via Mixed Integer Linear Programming (MILP). We solve the MILP problem at each iteration via an off-the-shelf MILP solver. Our experimental results show that our method significantly outperforms existing heuristic methods, employing either independent optimization or joint optimization strategies. We have also verified the generalization ability of our method over grid environments with various sizes and its high robustness to the algorithm hyper-parameters.

cs.DC↗

arXiv2025

Learning to Measure Quantum Neural Networks

The rapid progress in quantum computing (QC) and machine learning (ML) has attracted growing attention, prompting extensive research into quantum machine learning (QML) algorithms to solve diverse and complex problems. Designing high-performance QML models demands expert-level proficiency, which remains a significant obstacle to the broader adoption of QML. A few major hurdles include crafting effective data encoding techniques and parameterized quantum circuits, both of which are crucial to the performance of QML models. Additionally, the measurement phase is frequently overlooked-most current QML models rely on pre-defined measurement protocols that often fail to account for the specific problem being addressed. We introduce a novel approach that makes the observable of the quantum system-specifically, the Hermitian matrix-learnable. Our method features an end-to-end differentiable learning framework, where the parameterized observable is trained alongside the ordinary quantum circuit parameters simultaneously. Using numerical simulations, we show that the proposed method can identify observables for variational quantum circuits that lead to improved outcomes, such as higher classification accuracy, thereby boosting the overall performance of QML models.

quant-ph↗

arXiv2024

Evidential Deep Learning for Probabilistic Modelling of Extreme Storm Events

Uncertainty quantification (UQ) methods play an important role in reducing errors in weather forecasting. Conventional approaches in UQ for weather forecasting rely on generating an ensemble of forecasts from physics-based simulations to estimate the uncertainty. However, it is computationally expensive to generate many forecasts to predict real-time extreme weather events. Evidential Deep Learning (EDL) is an uncertainty-aware deep learning approach designed to provide confidence about its predictions using only one forecast. It treats learning as an evidence acquisition process where more evidence is interpreted as increased predictive confidence. We apply EDL to storm forecasting using real-world weather datasets and compare its performance with traditional methods. Our findings indicate that EDL not only reduces computational overhead but also enhances predictive uncertainty. This method opens up novel opportunities in research areas such as climate risk assessment, where quantifying the uncertainty about future climate is crucial.

cs.LG↗

arXiv2024

Variable Rate Neural Compression for Sparse Detector Data

High-energy large-scale particle colliders generate data at extraordinary rates. Developing real-time high-throughput data compression algorithms to reduce data volume and meet the bandwidth requirement for storage has become increasingly critical. Deep learning is a promising technology that can address this challenging topic. At the newly constructed sPHENIX experiment at the Relativistic Heavy Ion Collider, a Time Projection Chamber (TPC) serves as the main tracking detector, which records three-dimensional particle trajectories in a volume of a gas-filled cylinder. In terms of occupancy, the resulting data flow can be very sparse reaching $10^{-3}$ for proton-proton collisions. Such sparsity presents a challenge to conventional learning-free lossy compression algorithms, such as SZ, ZFP, and MGARD. In contrast, emerging deep learning-based models, particularly those utilizing convolutional neural networks for compression, have outperformed these conventional methods in terms of compression ratios and reconstruction accuracy. However, research on the efficacy of these deep learning models in handling sparse datasets, like those produced in particle colliders, remains limited. Furthermore, most deep learning models do not adapt their processing speeds to data sparsity, which affects efficiency. To address this issue, we propose a novel approach for TPC data compression via key-point identification facilitated by sparse convolution. Our proposed algorithm, BCAE-VS, achieves a $75\%$ improvement in reconstruction accuracy with a $10\%$ increase in compression ratio over the previous state-of-the-art model. Additionally, BCAE-VS manages to achieve these results with a model size over two orders of magnitude smaller. Lastly, we have experimentally verified that as sparsity increases, so does the model's throughput.

physics.ins-det↗