arXiv subjects

Shirui Luo

Publications and source records attributed to Shirui Luo.

5 recordsLinked to original sources

arXiv2026

Seamless Whole Slide Label-Free Virtual Staining

Label-free virtual staining offers a compelling, non-destructive alternative to standard histopathology; however, its clinical adoption is hindered by the computational bottlenecks inherent to processing gigapixel Whole Slide Images (WSIs). Current deep learning approaches require patch-based inference to avoid memory constraints, which disrupts global tissue continuity and introduces tiling artifacts--displaying visible seams and color shifts. To address this, we introduce the Consistency Memory Bank (COMB), a novel label-free virtual staining framework that enforces spatial and channel consistency across tiles without memory bottlenecks. COMB decouples context storage from computation, utilizing a dynamic retrieval mechanism to fetch feature representations from adjacent tiles. This enables a retrieval-based context integration strategy that adopts local padding to resolve spatial discontinuities and neighbor-aware channel attention to stabilize statistical drift. Further optimized with a sliding window schedule to ensure minimal memory overhead, our method demonstrates superior performance over state-of-the-art baselines, achieving significant improvements in both perceptual fidelity and tiling consistency, while suggesting its downstream utility in tumor segmentation. Code is available at https://github.com/dou0000/COMB.

eess.IV↗

arXiv2025

Hierarchical Diffusion Framework for Pseudo-Healthy Brain MRI Inpainting with Enhanced 3D Consistency

Pseudo-healthy image inpainting is an essential preprocessing step for analyzing pathological brain MRI scans. Most current inpainting methods favor slice-wise 2D models for their high in-plane fidelity, but their independence across slices produces discontinuities in the volume. Fully 3D models alleviate this issue, but their high model capacity demands extensive training data for reliable, high-fidelity synthesis -- often impractical in medical settings. We address these limitations with a hierarchical diffusion framework by replacing direct 3D modeling with two perpendicular coarse-to-fine 2D stages. An axial diffusion model first yields a coarse, globally consistent inpainting; a coronal diffusion model then refines anatomical details. By combining perpendicular spatial views with adaptive resampling, our method balances data efficiency and volumetric consistency. Our experiments show our approach outperforms state-of-the-art baselines in both realism and volumetric consistency, making it a promising solution for pseudo-healthy image inpainting. Code is available at https://github.com/dou0000/3dMRI-Consistent-Inpaint.

eess.IV↗

arXiv2025

Introducing 3D Representation for Medical Image Volume-to-Volume Translation via Score Fusion

In volume-to-volume translations in medical images, existing models often struggle to capture the inherent volumetric distribution using 3D voxelspace representations, due to high computational dataset demands. We present Score-Fusion, a novel volumetric translation model that effectively learns 3D representations by ensembling perpendicularly trained 2D diffusion models in score function space. By carefully initializing our model to start with an average of 2D models as in TPDM, we reduce 3D training to a fine-tuning process and thereby mitigate both computational and data demands. Furthermore, we explicitly design the 3D model's hierarchical layers to learn ensembles of 2D features, further enhancing efficiency and performance. Moreover, Score-Fusion naturally extends to multi-modality settings, by fusing diffusion models conditioned on different inputs for flexible, accurate integration. We demonstrate that 3D representation is essential for better performance in downstream recognition tasks, such as tumor segmentation, where most segmentation models are based on 3D representation. Extensive experiments demonstrate that Score-Fusion achieves superior accuracy and volumetric fidelity in 3D medical image super-resolution and modality translation. Beyond these improvements, our work also provides broader insight into learning-based approaches for score function fusion.

cs.CV↗

arXiv2023

Towards Exascale Computation for Turbomachinery Flows

A state-of-the-art large eddy simulation code has been developed to solve compressible flows in turbomachinery. The code has been engineered with a high degree of scalability, enabling it to effectively leverage the many-core architecture of the new Sunway system. A consistent performance of 115.8 DP-PFLOPs has been achieved on a high-pressure turbine cascade consisting of over 1.69 billion mesh elements and 865 billion Degree of Freedoms (DOFs). By leveraging a high-order unstructured solver and its portability to large heterogeneous parallel systems, we have progressed towards solving the grand challenge problem outlined by NASA, which involves a time-dependent simulation of a complete engine, incorporating all the aerodynamic and heat transfer components.

cs.DC↗

arXiv2020

Review and Examination of Input Feature Preparation Methods and Machine Learning Models for Turbulence Modeling

Model extrapolation to unseen flow is one of the biggest challenges facing data-driven turbulence modeling, especially for models with high dimensional inputs that involve many flow features. In this study we review previous efforts on data-driven Reynolds-Averaged Naiver Stokes (RANS) turbulence modeling and model extrapolation, with main focus on the popular methods being used in the field of transfer learning. Several potential metrics to measure the dissimilarity between training flows and testing flows are examined. Different Machine Learning (ML) models are compared to understand how the capacity or complexity of the model affects its behavior in the face of dataset shift. Data preprocessing schemes which are robust to covariate shift, like normalization, transformation, and importance re-weighted likelihood, are studied to understand whether it is possible to find projections of the data that attenuate the differences in the training and test distributions while preserving predictability. Three metrics are proposed to assess the dissimilarity between training/testing dataset. To attenuate the dissimilarity, a distribution matching framework is used to align the statistics of the distributions. These modifications also allow the regression tasks to have better accuracy in forecasting under-represented extreme values of the target variable. These findings are useful for future ML based turbulence models to evaluate their model predictability and provide guidance to systematically generate diversified high-fidelity simulation database.

physics.flu-dyn↗