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Shiv Pratap Singh Rathore

Publications and source records attributed to Shiv Pratap Singh Rathore.

3 recordsLinked to original sources

RPA Decoding with Few Subspace Projections for Correcting Structured Error Patterns in RM Codes

The Recursive Projection Aggregation (RPA) decoder for Reed-Muller codes uses, in its default implementation, all one-dimensional subspaces at each level of recursion. We restrict our attention to the case where the number of errors is $t<d_{\mathrm{min}}/2$. It is known that if the number of errors is $t<d_{\mathrm{min}}/2$, then $2t+1$ subspaces at each level of recursion are sufficient to correct these errors. We show that, for structured error patterns, the number of subspaces required for correction can be reduced further by appropriately selecting the subspaces used for projection. In particular, when errors occur as a single burst of length $t < d_{\mathrm{min}}/2$, three subspaces at each level of recursion suffice for correction. We obtain similar results for multiple bursts and other structured error patterns as well.

cs.IT↗

Estimators for Substitution Rates in Genomes from Read Data

We study the problem of estimating the mutation rate between two sequences from noisy sequencing reads. Existing alignment-free methods typically assume direct access to the full sequences. We extend these methods to the sequencing framework, where only noisy reads from the sequences are observed. We use a simple model in which both mutations and sequencing errors are substitutions. We propose multiple estimators, provide theoretical guarantees for one of them, and evaluate the others through simulations.

cs.IT↗

Trace Reconstruction of First-Order Reed-Muller Codewords Using Run Statistics

In this paper, we derive an expression for the expected number of runs in a trace of a binary sequence $x \in \{0,1\}^n$ obtained by passing $x$ through a deletion channel that independently deletes each bit with probability $q$. We use this expression to show that if $x$ is a codeword of a first-order Reed-Muller code, and the deletion probability $q$ is 1/2, then $x$ can be reconstructed, with high probability, from $\tilde{O}(n^2)$ many of its traces.

cs.IT↗