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Shuang Ye

Publications and source records attributed to Shuang Ye.

3 recordsLinked to original sources

Unsupervised Learning for AC Optimal Power Flow with Fast Physics-Aware Layer

Learning to solve the Alternating Current Optimal Power Flow (AC-OPF) problem by neural networks (NNs) is a promising approach in real-time applications. Existing methods to ensure the physical feasibility of NN outputs embed a power flow (PF) solver within networks. However, the gradient through the PF solver, namely, implicit differentiation, needs manual Jacobian derivation and the solution of linear systems, which is computationally prohibitive and hinders integration with modern automatic differentiation (AD) frameworks. To address these challenges, we propose FPL-OPF, a novel unsupervised learning framework that incorporates a Fast Physics-aware Layer for AC-OPF problems. FPL-OPF embeds a fast PF iterative solver within the NN and takes solely the last few or even the final iterations into the AD graph. This design ensures high computational efficiency for both the forward and backward passes, circumventing complex custom backward implementations. Theoretically, we rigorously prove that the gradient from this design serves as a high-fidelity surrogate of the true implicit gradient under mild conditions. Extensive experiments demonstrate that FPL-OPF achieves significant speedups over state-of-the-art unsupervised learning approaches, while maintaining near-zero constraint violations and competitive optimality. Our code is available at https://github.com/wowotou1998/fpl-opf

cs.CE

Accurate Prediction of Antibody Function and Structure Using Bio-Inspired Antibody Language Model

In recent decades, antibodies have emerged as indispensable therapeutics for combating diseases, particularly viral infections. However, their development has been hindered by limited structural information and labor-intensive engineering processes. Fortunately, significant advancements in deep learning methods have facilitated the precise prediction of protein structure and function by leveraging co-evolution information from homologous proteins. Despite these advances, predicting the conformation of antibodies remains challenging due to their unique evolution and the high flexibility of their antigen-binding regions. Here, to address this challenge, we present the Bio-inspired Antibody Language Model (BALM). This model is trained on a vast dataset comprising 336 million 40% non-redundant unlabeled antibody sequences, capturing both unique and conserved properties specific to antibodies. Notably, BALM showcases exceptional performance across four antigen-binding prediction tasks. Moreover, we introduce BALMFold, an end-to-end method derived from BALM, capable of swiftly predicting full atomic antibody structures from individual sequences. Remarkably, BALMFold outperforms those well-established methods like AlphaFold2, IgFold, ESMFold, and OmegaFold in the antibody benchmark, demonstrating significant potential to advance innovative engineering and streamline therapeutic antibody development by reducing the need for unnecessary trials.

q-bio.BM

Supervised and Semi-Supervised Deep Neural Networks for CSI-Based Authentication

From the viewpoint of physical-layer authentication, spoofing attacks can be foiled by checking channel state information (CSI). Existing CSI-based authentication algorithms mostly require a deep knowledge of the channel to deliver decent performance. In this paper, we investigate CSI-based authenticators that can spare the effort to predetermine channel properties by utilizing deep neural networks (DNNs). We first propose a convolutional neural network (CNN)-enabled authenticator that is able to extract the local features in CSI. Next, we employ the recurrent neural network (RNN) to capture the dependencies between different frequencies in CSI. In addition, we propose to use the convolutional recurrent neural network (CRNN)---a combination of the CNN and the RNN---to learn local and contextual information in CSI for user authentication. To effectively train these DNNs, one needs a large amount of labeled channel records. However, it is often expensive to label large channel observations in the presence of a spoofer. In view of this, we further study a case in which only a small part of the the channel observations are labeled. To handle it, we extend these DNNs-enabled approaches into semi-supervised ones. This extension is based on a semi-supervised learning technique that employs both the labeled and unlabeled data to train a DNN. To be specific, our semi-supervised method begins by generating pseudo labels for the unlabeled channel samples through implementing the K-means algorithm in a semi-supervised manner. Subsequently, both the labeled and pseudo labeled data are exploited to pre-train a DNN, which is then fine-tuned based on the labeled channel records.

cs.LG