arXiv subjects

Si Wu

Publications and source records attributed to Si Wu.

At least 37 records · Page 2Linked to original sources

arXiv2025

Quantum relaxometry for detecting biomolecular interactions with single NV centers

The investigation of biomolecular interactions at the single-molecule level has emerged as a pivotal research area in life science, particularly through optical, mechanical, and electrochemical approaches. Spins existing widely in biological systems, offer a unique degree of freedom for detecting such interactions. However, most previous studies have been largely confined to ensemble-level detection in the spin degree. Here, we developed a molecular interaction analysis method approaching single-molecule level based on relaxometry using the quantum sensor, nitrogen-vacancy (NV) center in diamond. Experiments utilized an optimized diamond surface functionalized with a polyethylenimine nanogel layer, achieving $\sim$10 nm average protein distance and mitigating interfacial steric hindrance. Then we measured the strong interaction between streptavidin and spin-labeled biotin complexes, as well as the weak interaction between bovine serum albumin and biotin complexes, at both the micrometer scale and nanoscale. For the micrometer-scale measurements using ensemble NV centers, we re-examined the often-neglected fast relaxation component and proposed a relaxation rate evaluation method, substantially enhancing the measurement sensitivity. Furthermore, we achieved nanoscale detection approaching single-molecule level using single NV centers. This methodology holds promise for applications in molecular screening, identification and kinetic studies at the single-molecule level, offering critical insights into molecular function and activity mechanisms.

quant-ph↗

arXiv2025

Vector Quantization in the Brain: Grid-like Codes in World Models

We propose Grid-like Code Quantization (GCQ), a brain-inspired method for compressing observation-action sequences into discrete representations using grid-like patterns in attractor dynamics. Unlike conventional vector quantization approaches that operate on static inputs, GCQ performs spatiotemporal compression through an action-conditioned codebook, where codewords are derived from continuous attractor neural networks and dynamically selected based on actions. This enables GCQ to jointly compress space and time, serving as a unified world model. The resulting representation supports long-horizon prediction, goal-directed planning, and inverse modeling. Experiments across diverse tasks demonstrate GCQ's effectiveness in compact encoding and downstream performance. Our work offers both a computational tool for efficient sequence modeling and a theoretical perspective on the formation of grid-like codes in neural systems.

cs.LG↗

arXiv2025

Uncovering Visual-Semantic Psycholinguistic Properties from the Distributional Structure of Text Embedding Space

Imageability (potential of text to evoke a mental image) and concreteness (perceptibility of text) are two psycholinguistic properties that link visual and semantic spaces. It is little surprise that computational methods that estimate them do so using parallel visual and semantic spaces, such as collections of image-caption pairs or multi-modal models. In this paper, we work on the supposition that text itself in an image-caption dataset offers sufficient signals to accurately estimate these properties. We hypothesize, in particular, that the peakedness of the neighborhood of a word in the semantic embedding space reflects its degree of imageability and concreteness. We then propose an unsupervised, distribution-free measure, which we call Neighborhood Stability Measure (NSM), that quantifies the sharpness of peaks. Extensive experiments show that NSM correlates more strongly with ground-truth ratings than existing unsupervised methods, and is a strong predictor of these properties for classification. Our code and data are available on GitHub (https://github.com/Artificial-Memory-Lab/imageability).

cs.CL↗

arXiv2025

Predictive Learning in Energy-based Models with Attractor Structures

Predictive models are highly advanced in understanding the mechanisms of brain function. Recent advances in machine learning further underscore the power of prediction for optimal representation in learning. However, there remains a gap in creating a biologically plausible model that explains how the neural system achieves prediction. In this paper, we introduce a framework that employs an energy-based model (EBM) to capture the nuanced processes of predicting observation after action within the neural system, encompassing prediction, learning, and inference. We implement the EBM with a hierarchical structure and integrate a continuous attractor neural network for memory, constructing a biologically plausible model. In experimental evaluations, our model demonstrates efficacy across diverse scenarios. The range of actions includes eye movement, motion in environments, head turning, and static observation while the environment changes. Our model not only makes accurate predictions for environments it was trained on, but also provides reasonable predictions for unseen environments, matching the performances of machine learning methods in multiple tasks. We hope that this study contributes to a deep understanding of how the neural system performs prediction.

cs.LG↗

arXiv2025

Insights into dendritic growth mechanisms in batteries: A combined machine learning and computational study

In recent years, researchers have increasingly sought batteries as an efficient and cost-effective solution for energy storage and supply, owing to their high energy density, low cost, and environmental resilience. However, the issue of dendrite growth has emerged as a significant obstacle in battery development. Excessive dendrite growth during charging and discharging processes can lead to battery short-circuiting, degradation of electrochemical performance, reduced cycle life, and abnormal exothermic events. Consequently, understanding the dendrite growth process has become a key challenge for researchers. In this study, we investigated dendrite growth mechanisms in batteries using a combined machine learning approach, specifically a two-dimensional artificial convolutional neural network (CNN) model, along with computational methods. We developed two distinct computer models to predict dendrite growth in batteries. The CNN-1 model employs standard convolutional neural network techniques for dendritic growth prediction, while CNN-2 integrates additional physical parameters to enhance model robustness. Our results demonstrate that CNN-2 significantly enhances prediction accuracy, offering deeper insights into the impact of physical factors on dendritic growth. This improved model effectively captures the dynamic nature of dendrite formation, exhibiting high accuracy and sensitivity. These findings contribute to the advancement of safer and more reliable energy storage systems.

physics.comp-ph↗

arXiv2025

Model Adaptation: Unsupervised Domain Adaptation without Source Data

In this paper, we investigate a challenging unsupervised domain adaptation setting -- unsupervised model adaptation. We aim to explore how to rely only on unlabeled target data to improve performance of an existing source prediction model on the target domain, since labeled source data may not be available in some real-world scenarios due to data privacy issues. For this purpose, we propose a new framework, which is referred to as collaborative class conditional generative adversarial net to bypass the dependence on the source data. Specifically, the prediction model is to be improved through generated target-style data, which provides more accurate guidance for the generator. As a result, the generator and the prediction model can collaborate with each other without source data. Furthermore, due to the lack of supervision from source data, we propose a weight constraint that encourages similarity to the source model. A clustering-based regularization is also introduced to produce more discriminative features in the target domain. Compared to conventional domain adaptation methods, our model achieves superior performance on multiple adaptation tasks with only unlabeled target data, which verifies its effectiveness in this challenging setting.

cs.CV↗

arXiv2025

Discrete Prior-based Temporal-coherent Content Prediction for Blind Face Video Restoration

Blind face video restoration aims to restore high-fidelity details from videos subjected to complex and unknown degradations. This task poses a significant challenge of managing temporal heterogeneity while at the same time maintaining stable face attributes. In this paper, we introduce a Discrete Prior-based Temporal-Coherent content prediction transformer to address the challenge, and our model is referred to as DP-TempCoh. Specifically, we incorporate a spatial-temporal-aware content prediction module to synthesize high-quality content from discrete visual priors, conditioned on degraded video tokens. To further enhance the temporal coherence of the predicted content, a motion statistics modulation module is designed to adjust the content, based on discrete motion priors in terms of cross-frame mean and variance. As a result, the statistics of the predicted content can match with that of real videos over time. By performing extensive experiments, we verify the effectiveness of the design elements and demonstrate the superior performance of our DP-TempCoh in both synthetically and naturally degraded video restoration.

cs.CV↗

arXiv2024

Ultrasonic-assisted liquid phase exfoliation for high-yield monolayer graphene with enhanced crystallinity

Graphene stands as a promising material with vast potential across energy storage, electronics, etc. Here, we present a novel mechanical approach utilizing ultrasonic high-energy intercalation exfoliation to extract monolayer graphene from graphite, offering a simple yet efficient alternative to conventional methods. Through a comprehensive series of characterizations involving atomic force microscopy, scanning electron microscopy, Raman spectroscopy, X-ray diffraction, and X-ray photoelectron spectroscopy, the resulting graphene nanosheets demonstrate superior crystallinity compared to those obtained via the conventional method. The high-crystalline freestanding graphene nanosheets derived from this method not only facilitate easier separation but also significantly enhance the physical performance of the original materials. This method showcases the potential for scalable production of layered materials with increased yield and crystallinity, paving the way for their utilization in various applications.

cond-mat.mtrl-sci↗

arXiv2024

Unraveling the magnetic and electronic complexity of intermetallic ErPd$_2$Si$_2$: Anisotropic thermal expansion, phase transitions, and twofold magnetotransport behavior

We present a comprehensive investigation into the physical properties of intermetallic ErPd$_2$Si$_2$, a compound renowned for its intriguing magnetic and electronic characteristics. We confirm the tetragonal crystal structure of ErPd$_2$Si$_2$ within the $I4/mmm$ space group. Notably, we observed anisotropic thermal expansion, with the lattice constant $a$ expanding and $c$ contracting between 15 K and 300 K. This behavior is attributed to lattice vibrations and electronic contributions. Heat capacity measurements revealed three distinct temperature regimes: $T_1 \sim 3.0$ K, $T_\textrm{N} \sim 4.20$ K, and $T_2 \sim 15.31$ K. These correspond to the disappearance of spin-density waves, the onset of an incommensurate antiferromagnetic (AFM) structure, and the crystal-field splitting and/or the presence of short-range spin fluctuations, respectively. Remarkably, the AFM phase transition anomaly was observed exclusively in low-field magnetization data (120 Oe) at $T_\textrm{N}$. A high magnetic field ($B =$ 3 T) effectively suppressed this anomaly, likely due to spin-flop and spin-flip transitions. Furthermore, the extracted effective PM moments closely matched the expected theoretical value, suggesting a dominant magnetic contribution from localized 4$f$ spins of Er. Additionally, significant differences in resistance ($R$) values at low temperatures under applied $B$ indicated a magnetoresistance (MR) effect with a minimum value of -4.36\%. Notably, the measured MR effect exhibited anisotropic behavior, where changes in the strength or direction of the applied $B$ induced variations in the MR effect. A twofold symmetry of $R$ was discerned at 3 T and 9 T, originating from the orientation of spin moments relative to the applied $B$. Intriguingly, above $T_\textrm{N}$, short-range spin fluctuations also displayed a preferred orientation along the $c$-axis due to single-ion anisotropy.

cond-mat.str-el↗

arXiv2024

Dynamics of Adaptive Continuous Attractor Neural Networks

Attractor neural networks consider that neural information is stored as stationary states of a dynamical system formed by a large number of interconnected neurons. The attractor property empowers a neural system to encode information robustly, but it also incurs the difficulty of rapid update of network states, which can impair information update and search in the brain. To overcome this difficulty, a solution is to include adaptation in the attractor network dynamics, whereby the adaptation serves as a slow negative feedback mechanism to destabilize which are otherwise permanently stable states. In such a way, the neural system can, on one hand, represent information reliably using attractor states, and on the other hand, perform computations wherever rapid state updating is involved. Previous studies have shown that continuous attractor neural networks with adaptation (A-CANNs) exhibits rich dynamical behaviors accounting for various brain functions. In this paper, we present a comprehensive view of the rich diverse dynamics of A-CANNs. Moreover, we provide a unified mathematical framework to understand these different dynamical behaviors, and briefly discuss about their biological implications.

q-bio.NC↗

arXiv2024

A Differentiable Approach to Multi-scale Brain Modeling

We present a multi-scale differentiable brain modeling workflow utilizing BrainPy, a unique differentiable brain simulator that combines accurate brain simulation with powerful gradient-based optimization. We leverage this capability of BrainPy across different brain scales. At the single-neuron level, we implement differentiable neuron models and employ gradient methods to optimize their fit to electrophysiological data. On the network level, we incorporate connectomic data to construct biologically constrained network models. Finally, to replicate animal behavior, we train these models on cognitive tasks using gradient-based learning rules. Experiments demonstrate that our approach achieves superior performance and speed in fitting generalized leaky integrate-and-fire and Hodgkin-Huxley single neuron models. Additionally, training a biologically-informed network of excitatory and inhibitory spiking neurons on working memory tasks successfully replicates observed neural activity and synaptic weight distributions. Overall, our differentiable multi-scale simulation approach offers a promising tool to bridge neuroscience data across electrophysiological, anatomical, and behavioral scales.

cs.NE↗

arXiv2024

Deep learning-driven evaluation and prediction of ion-doped NASICON materials for enhanced solid-state battery performance

We developed a convolutional neural network (CNN) model capable of predicting the performance of various ion-doped NASICON compounds by leveraging extensive datasets from prior experimental investigation.The model demonstrated high accuracy and efficiency in predicting ionic conductivity and electrochemical properties. Key findings include the successful synthesis and validation of three NASICON materials predicted by the model, with experimental results closely matching the model predictions. This research not only enhances the understanding of ion-doping effects in NASICON materials but also establishes a robust framework for material design and practical applications. It bridges the gap between theoretical predictions and experimental validations.

cond-mat.mtrl-sci↗

arXiv2024

Crystal, ferromagnetism, and magnetoresistance with sign reversal in a EuAgP semiconductor

We synthesized the ferromagnetic EuAgP semiconductor and conducted a comprehensive study of its crystalline, magnetic, heat capacity, band gap, and magnetoresistance properties. Our investigation utilized a combination of X-ray diffraction, optical, and PPMS DynaCool measurements. EuAgP adopts a hexagonal structure with the $P6_3/mmc$ space group. As the temperature decreases, it undergoes a magnetic phase transition from high-temperature paramagnetism to low-temperature ferromagnetism. We determined the ferromagnetic transition temperature to be $T_{\textrm{C}} =$ 16.45(1) K by fitting the measured magnetic susceptibility using a Curie-Weiss law. Heat capacity analysis of EuAgP considered contributions from electrons, phonons, and magnons, revealing $η$ = 0.03 J/mol/$\textrm{K}^\textrm{2}$, indicative of semiconducting behavior. Additionally, we calculated a band gap of $\sim$ 1.324(4) eV based on absorption spectrum measurements. The resistivity versus temperature of EuAgP measured in the absence of an applied magnetic field shows a pronounced peak around $T_{\textrm{C}}$, which diminishes rapidly with increasing applied magnetic fields, ranging from 1 to 14 T. An intriguing phenomenon emerges in the form of a distinct magnetoresistance transition, shifting from positive (e.g., 1.95\% at 300 K and 14 T) to negative (e.g., -30.73\% at 14.25 K and 14 T) as the temperature decreases. This behavior could be attributed to spin-disordered scattering.

cond-mat.str-el↗

arXiv2024

Constructive Safety Control

This paper proposes a constructive approach to safety control of nonlinear cascade systems subject to multiple state constraints. New design ingredients include a unified characterization of safety and stability for systematic designs of safety controllers, and a novel technique of reshaping the feasible sets of quadratically constrained quadratic programming induced from safety control. The proposed method guarantees Lipschitz continuity of virtual control laws, enabling a stepwise constructive design. A refined nonlinear small-gain synthesis is employed to address the nonlinear uncertain interconnections between the resulting subsystems corresponding to different virtual control laws, and to guarantee the achievement of the safety control objective. When the safety constraints are removed, the proposed approach coincides with the standard constructive nonlinear control. The proposed safety-control algorithm is experimentally validated in a testbed involving a vertical takeoff and landing (VTOL) vehicle taking off in narrow spaces.

eess.SY↗

arXiv2024

Safety-Critical Control of Euler-Lagrange Systems Subject to Multiple Obstacles and Velocity Constraints

This paper studies the safety-critical control problem for Euler-Lagrange (EL) systems subject to multiple ball obstacles and velocity constraints in accordance with affordable velocity ranges. A key strategy is to exploit the underlying inner-outer-loop structure for the design of a new cascade controller for the class of EL systems. In particular, the outer-loop controller is developed based on quadratic programming (QP) to avoid ball obstacles and generate velocity reference signals fulfilling the velocity limitation. Taking full advantage of the conservation-of-energy property, a nonlinear velocity-tracking controller is designed to form the inner loop. One major difficulty is caused by the possible non-Lipschitz continuity of the standard QP algorithm when there are multiple constraints. To solve this problem, we propose a refined QP algorithm with the feasible set reshaped by an appropriately chosen positive basis such that the feasibility is retained while the resulting outer-loop controller is locally Lipschitz. It is proved that the constraint-satisfaction problem is solvable as long as the ball obstacles satisfy a mild distance condition. The proposed design is validated by numerical simulation and an experiment based on a $2$-link planar manipulator.

eess.SY↗

arXiv2024

Learning Sequence Attractors in Recurrent Networks with Hidden Neurons

The brain is targeted for processing temporal sequence information. It remains largely unclear how the brain learns to store and retrieve sequence memories. Here, we study how recurrent networks of binary neurons learn sequence attractors to store predefined pattern sequences and retrieve them robustly. We show that to store arbitrary pattern sequences, it is necessary for the network to include hidden neurons even though their role in displaying sequence memories is indirect. We develop a local learning algorithm to learn sequence attractors in the networks with hidden neurons. The algorithm is proven to converge and lead to sequence attractors. We demonstrate that the network model can store and retrieve sequences robustly on synthetic and real-world datasets. We hope that this study provides new insights in understanding sequence memory and temporal information processing in the brain.

cs.NE↗

arXiv2024

AttriHuman-3D: Editable 3D Human Avatar Generation with Attribute Decomposition and Indexing

Editable 3D-aware generation, which supports user-interacted editing, has witnessed rapid development recently. However, existing editable 3D GANs either fail to achieve high-accuracy local editing or suffer from huge computational costs. We propose AttriHuman-3D, an editable 3D human generation model, which address the aforementioned problems with attribute decomposition and indexing. The core idea of the proposed model is to generate all attributes (e.g. human body, hair, clothes and so on) in an overall attribute space with six feature planes, which are then decomposed and manipulated with different attribute indexes. To precisely extract features of different attributes from the generated feature planes, we propose a novel attribute indexing method as well as an orthogonal projection regularization to enhance the disentanglement. We also introduce a hyper-latent training strategy and an attribute-specific sampling strategy to avoid style entanglement and misleading punishment from the discriminator. Our method allows users to interactively edit selected attributes in the generated 3D human avatars while keeping others fixed. Both qualitative and quantitative experiments demonstrate that our model provides a strong disentanglement between different attributes, allows fine-grained image editing and generates high-quality 3D human avatars.

cs.CV↗

arXiv2024

A differentiable brain simulator bridging brain simulation and brain-inspired computing

Brain simulation builds dynamical models to mimic the structure and functions of the brain, while brain-inspired computing (BIC) develops intelligent systems by learning from the structure and functions of the brain. The two fields are intertwined and should share a common programming framework to facilitate each other's development. However, none of the existing software in the fields can achieve this goal, because traditional brain simulators lack differentiability for training, while existing deep learning (DL) frameworks fail to capture the biophysical realism and complexity of brain dynamics. In this paper, we introduce BrainPy, a differentiable brain simulator developed using JAX and XLA, with the aim of bridging the gap between brain simulation and BIC. BrainPy expands upon the functionalities of JAX, a powerful AI framework, by introducing complete capabilities for flexible, efficient, and scalable brain simulation. It offers a range of sparse and event-driven operators for efficient and scalable brain simulation, an abstraction for managing the intricacies of synaptic computations, a modular and flexible interface for constructing multi-scale brain models, and an object-oriented just-in-time compilation approach to handle the memory-intensive nature of brain dynamics. We showcase the efficiency and scalability of BrainPy on benchmark tasks, highlight its differentiable simulation for biologically plausible spiking models, and discuss its potential to support research at the intersection of brain simulation and BIC.

cs.NE↗