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SiYuan Ma

Publications and source records attributed to SiYuan Ma.

8 recordsLinked to original sources

ValuSpec: Plug-and-Play Candidate Valuation before Target Verification for Tree-Based Speculative Decoding

Tree-based speculative decoding accelerates large language model inference by verifying multiple candidate branches in parallel. However, in practical serving scenarios, similar requests repeatedly induce overlapping candidate branches. While retrieval-based methods mitigate this by reusing historical drafts, the resulting candidate trees often contain many low-quality branches as the candidate tree grows, which reduces verification efficiency and wastes target-side computation. To address this, we propose ValuSpec, a plug-and-play candidate valuation mechanism that filters low-quality branches from a supplied candidate tree before expensive target-side verification. ValuSpec introduces transfer-based supervision to align filtering with the target model's behavior. A filtering threshold is estimated from the target model's greedy trajectories on a calibration split, without any parameter training. The target model then verifies the filtered tree under the output-identical greedy rule, so accepted tokens are guaranteed to match standard autoregressive decoding exactly. Experimental results on HumanEval, GSM8K, Dolly, and SpecBench show that, in our main evaluation, ValuSpec achieves up to 2.38x end-to-end speedup in retrieval-based tree settings. Furthermore, integrating ValuSpec into the EAGLE-3 dynamic tree framework yields up to 2.78x end-to-end speedup without modifying its tree construction strategy, demonstrating that ValuSpec serves as a generally applicable and plug-and-play candidate valuation module.

cs.AI↗

Linear Fitness Subspace in Protein Language Models Enables Sample-Efficient Directed Evolution

Model-guided directed evolution seeks to identify high-fitness protein variants under limited oracle budgets. Protein language models (PLMs) provide rich representations for this task, but task-agnostic zero-shot scores can be misaligned with a target assay, while supervised search in high-dimensional embedding spaces can make surrogate modeling and uncertainty estimation sample-inefficient. We propose the Linear Fitness Subspace (LFS) hypothesis: within mutation-induced residue-level representation changes, a compact, assay-specific set of directions makes fitness variation linearly accessible from few labeled variants. This is a local, supervision-recoverable statement rather than a claim that protein fitness landscapes or global PLM geometry are universally linear. Building on this observation, we introduce Subspace-Guided Evolutionary Search (SGES), which estimates an LFS from a small initial sample and performs surrogate modeling, uncertainty estimation, and acquisition in the learned subspace. Across 10 core ProteinGym assays, 87 extended static-validation assays, and an 18-assay budgeted-search evaluation, SGES improves fitness prediction and search efficiency over zero-shot PLMs and recent ML-guided protein optimization baselines. Controlled comparisons with PCA, random projections, label-shuffled PLS, classical mutation features, and acquisition ablations further isolate the benefit of a fitness-aligned site-delta coordinate.

q-bio.QM↗

Learning to Outgrow a Theory: Experimental Discovery Beyond the Initial Hypothesis Space

Scientific discovery systems typically optimize experiments within a fixed hypothesis space. This creates a failure mode when all available candidates omit the same missing mechanism: candidate disagreement can collapse even while the model class is systematically wrong. We formulate experimental model-class revision, in which a discovery policy jointly proposes a structural edit and a diagnostic experiment that tests whether that edit is necessary. The method couples a class-level distinguishability objective, in which one shared parameterization must explain all selected experiments, with anytime-valid sequential evidence that triggers structural revision only after the current class is rejected. On 400 held-out controlled dynamical environments, the joint policy reaches 89.5% exact recovery with a budget of 32 real experiments, improving the strongest matched baseline by 10.0 percentage points while requiring fewer executed experiments and candidate fits. The learned revision-experiment pairing transfers across unseen mechanism combinations, held-out but expressible primitives, parameter extrapolation, and shifted experiment costs; when the true mechanism is outside the edit grammar, it detects library insufficiency in 88% of cases with a 5.5% false-support rate. Revision gains also transfer to ODEBench and ODEBase model-library tasks, as well as DiscoverPhysics worlds. These results support a view of scientific discovery in which deciding what mechanisms a theory should make expressible and where to collect evidence are treated as a single sequential decision problem.

cs.AI↗

Recursive Harness Self-Improvement for Frontier Reasoning Data Synthesis

Generating progressively harder reasoning problems requires synthesis procedures that adapt as the task distribution evolves. Existing task-level recursion reuses generated problems as seeds but leaves the construction harness unchanged. We present task-harness co-evolution, a framework for recursive harness self-improvement (RSI) in reasoning-data synthesis. Online self-improvement converts intermediate solver failures into reusable skills during generation. Post-task self-improvement revises skills, prompts, and workflows after each batch, adopting candidates only when they generate harder valid tasks within a bounded cost increase. Model weights and verification criteria remain fixed. Across mathematics, coding, and science, mean solver accuracy decreases from 100.0% to 54.8% over fourteen evolution rounds. Ablations show that combining both update schedules produces harder tasks than fixed-harness recursion or either schedule alone. The resulting data improves downstream SFT and GRPO performance. In particular, a 27B student fine-tuned on 10K synthesized mathematics examples achieves 62.5% mean-16 accuracy on APEX, competitive with selected frontier-model references. These results support adapting the synthesis harness alongside the tasks to generate increasingly challenging data with downstream training value.

cs.AI↗

CUA-Sandbox: Efficient Environments for Computer-Use Agent Reinforcement Learning

Reinforcement learning enables computer-use agents to improve through interaction with real software environments, including websites and desktop applications. However, conventional deployments replicate an initialized runtime for each independent rollout, even when trajectories use the same software, incurring repeated memory and initialization costs as the number of parallel environments grows. Does an independent computer-use environment require an independent execution runtime? Our key observation is that trajectories require independent mutable state, while initialized application runtimes can be reused across concurrently evolving environments, making state the natural unit of environment independence. Guided by this observation, we introduce CUA-Sandbox, which separates private state capsules from shared runtimes through state-scoped execution and transactional lifecycle operations, including resets and branches, while retaining the original software interfaces and task evaluators. Experiments show comparable or improved task success relative to Docker, while substantially reducing rollout and resource costs. CUA-Sandbox achieves up to a 6.20x increase in rollout throughput, a 9.2x reduction in per-environment memory, and a 504x reduction in incremental storage.

cs.AI↗

Hidden APIs in Language Models: Discovering Reusable Causal Interfaces from Forked Futures

Identical language-model answers can arise from hidden states that support different future computations, so current-answer probes do not establish a reusable internal interface. We introduce forked futures: future operations are sampled only after a prefix state has formed, and states are compared through the response distributions induced by those operations. This yields an empirical causal quotient over hidden states without requiring researcher-specified latent labels. Shared, Local, Mixture, and Distributed interfaces then compete under prequential causal description length subject to future-signature fidelity and matched capacity constraints. In the two detailed model evaluations, Shared has the lowest held-out description length, with gains of 0.216 nats on Qwen2.5-1.5B and 0.294 nats on Llama-3-8B, while maintaining tightly clustered mean future-signature distortion; a five-backbone sweep preserves the positive direction of Sharedness Gain. The figure-aligned transplantation analysis gives Shared the strongest joint target-correctness, locality, copy-preservation, and composite profile, and API-aligned paths mediate 0.749 of the target effect versus 0.150 for matched null paths. In the blind four-class model-organism test, 14/16 architectures are recovered, with one observed non-Shared to Shared error among 12 non-Shared organisms. These results support an economical reusable causal interface within the tested operation banks, while keeping the claim explicitly conditional on the candidate architectures, interventions, and held-out futures.

cs.AI↗

Large Language Models as Amortized Pareto-Front Generators for Constrained Bi-Objective Convex Optimization

Generating feasible Pareto fronts for constrained bi-objective continuous optimization is central to multi-criteria decision-making. Existing methods usually rely on iterative scalarization, evolutionary search, or problem-specific solvers, requiring repeated optimization for each instance. We introduce DIPS, an end-to-end framework that fine-tunes large language models as amortized Pareto-front generators for constrained bi-objective convex optimization. Given a textual problem description, DIPS directly outputs an ordered set of feasible continuous decision vectors approximating the Pareto front. To make continuous optimization compatible with autoregressive language modeling, DIPS combines a compact discretization scheme, Numerically Grounded Token Initialization for new numerical tokens, and Three-Phase Curriculum Optimization, which progressively aligns structural validity, feasibility, and Pareto-front quality. Across five families of constrained bi-objective convex problems, a fine-tuned 7B-parameter model achieves normalized hypervolume ratios of 95.29% to 98.18% relative to reference fronts. With vLLM-accelerated inference, DIPS solves one instance in as little as 0.16 seconds and outperforms general-purpose and reasoning LLM baselines under the evaluated setting. These results suggest that LLMs can serve as effective amortized generators for continuous Pareto-front approximation.

cs.AI↗

The calibration and electron energy reconstruction of the BGO ECAL of the DAMPE detector

The DArk Matter Particle Explorer (DAMPE) is a space experiment designed to search for dark matter indirectly by measuring the spectra of photons, electrons, and positrons up to 10 TeV. The BGO electromagnetic calorimeter (ECAL) is its main sub-detector for energy measurement. In this paper, the instrumentation and development of the BGO ECAL is briefly described. The calibration on the ground, including the pedestal, minimum ionizing particle (MIP) peak, dynode ratio, and attenuation length with the cosmic rays and beam particles is discussed in detail. Also, the energy reconstruction results of the electrons from the beam test are presented.

physics.ins-det↗