arXiv subjects

Siddhartha Mishra

Publications and source records attributed to Siddhartha Mishra.

At least 19 recordsLinked to original sources

arXiv2026

Out-of-Distribution Detection in Molecular Complexes via Diffusion Models for Irregular Graphs

Predictive machine learning models generally excel on in-distribution data, but their performance degrades on out-of-distribution (OOD) inputs. Reliable deployment therefore requires robust OOD detection, yet this is particularly challenging for irregular 3D graphs that combine continuous geometry with categorical identities and are unordered by construction. Here, we present a probabilistic OOD detection framework for complex 3D graph data built on a diffusion model that learns a density of the training distribution in a fully unsupervised manner. A key ingredient we introduce is a unified continuous diffusion over both 3D coordinates and discrete features: categorical identities are embedded in a continuous space and trained with cross-entropy, while the corresponding diffusion score is obtained analytically via posterior-mean interpolation from predicted class probabilities. This yields a single self-consistent probability-flow ODE (PF-ODE) that produces per-sample log-likelihoods, providing a principled typicality score for distribution shift. We validate the approach on protein-ligand complexes and construct strict OOD datasets by withholding entire protein families from training. PF-ODE likelihoods identify held-out families as OOD and correlate strongly with prediction errors of an independent binding-affinity model (GEMS), enabling a priori reliability estimates on new complexes. Beyond scalar likelihoods, we show that multi-scale PF-ODE trajectory statistics - including path tortuosity, flow stiffness, and vector-field instability - provide complementary OOD information. Modeling the joint distribution of these trajectory features yields a practical, high-sensitivity detector that improves separation over likelihood-only baselines, offering a label-free OOD quantification workflow for geometric deep learning.

cs.LG↗

arXiv2026

Pretrained Video Models as Differentiable Physics Simulators for Urban Wind Flows

Designing urban spaces that provide pedestrian wind comfort and safety requires time-resolved Computational Fluid Dynamics (CFD) simulations, but their current computational cost makes extensive design exploration impractical. We introduce WinDiNet (Wind Diffusion Network), a pretrained video diffusion model that is repurposed as a fast, differentiable surrogate for this task. Starting from LTX-Video, a 2B-parameter latent video transformer, we fine-tune on 10,000 2D incompressible CFD simulations over procedurally generated building layouts. A systematic study of training regimes, conditioning mechanisms, and VAE adaptation strategies, including a physics-informed decoder loss, identifies a configuration that outperforms purpose-built neural PDE solvers. The resulting model generates full 112-frame rollouts in under a second. As the surrogate is end-to-end differentiable, it doubles as a physics simulator for gradient-based inverse optimization: given an urban footprint layout, we optimize building positions directly through backpropagation to improve wind safety as well as pedestrian wind comfort. Experiments on single- and multi-inlet layouts show that the optimizer discovers effective layouts even under challenging multi-objective configurations, with all improvements confirmed by ground-truth CFD simulations.

cs.LG↗

arXiv2026

Can AI Weather Models Predict Beyond Two Weeks? A Quantitative Benchmark and Analysis of Long Rollouts

While AI weather models excel at short-to-medium range forecasts (up to 15 days), they frequently suffer from ill-defined "instabilities" when rolled out over longer horizons. This work addresses the lack of a formal taxonomy by categorizing these failures into three distinct regimes: blow-up, drift, and loss of seasonality, through year-long rollouts of nine state-of-the-art AI weather models. Our analysis reveals that stability hinges on the treatment of small spatio-temporal scales: unstable models amplify high-frequency energy, while stable models act as denoisers when noise is added to their inputs. Far from reducing these models to mere stochastic parrots, our findings highlight that stable models generate unique weather trajectories, conditioned on the initial state. We verify our findings through ablation studies on architectural design choices, conducted using state-of-the-art Vision Transformer (ViT) AI weather model architectures.

cs.LG↗

arXiv2026

Projected Inverse Iteration: An Eigenvalue Approach to Ground-State Computation with Neural Quantum States

Deep learning offers a powerful approach to quantum many-body problems via neural network wavefunctions, but their optimization remains a severe bottleneck. Existing optimization methods, including natural gradient descent and stochastic reconfiguration, suffer from spectral gap-dependent convergence that limits their effectiveness on systems fraught with competing orders and nearly degenerate ground states, such as frustrated magnets and strongly correlated electron materials. Here, we introduce Projected Inverse Iteration (PII) by re-framing the ground-state search as an eigenvalue problem. PII achieves rapid, gap-insensitive convergence while preserving the favorable polynomial computational scaling of stochastic reconfiguration. Demonstrated on challenging two-dimensional spin systems, including the highly frustrated $J_1$-$J_2$ model, PII outperforms standard optimization techniques and presents a promising algorithmic strategy for discovering complex quantum states in the presence of small spectral gaps. More broadly, PII can be interpreted as a novel natural gradient method tailored for eigenvalue problems, opening up its application to related challenges within deep learning.

quant-ph↗

arXiv2026

Learning, Solving and Optimizing PDEs with TensorGalerkin: an efficient high-performance Galerkin assembly algorithm

We present a unified algorithmic framework for the numerical solution, constrained optimization, and physics-informed learning of PDEs with a variational structure. Our framework is based on a Galerkin discretization of the underlying variational forms, and its high efficiency stems from a novel highly-optimized and GPU-compliant TensorGalerkin framework for linear system assembly (stiffness matrices and load vectors). TensorGalerkin operates by tensorizing element-wise operations within a Python-level Map stage and then performs global reduction with a sparse matrix multiplication that performs message passing on the mesh-induced sparsity graph. The Map and Reduce stages are co-designed inside PyTorch's autograd so that the assembly graph contains $O(1)$ nodes regardless of how the number of elements and local DoFs scale. We validate this $O(1)$-graph property by deploying TensorGalerkin downstream as i) a highly-efficient numerical PDEs solver, ii) an end-to-end differentiable framework for PDE-constrained optimization, and iii) a physics-informed operator learning algorithm for PDEs. With multiple benchmarks, including 2D and 3D elliptic, parabolic, and hyperbolic PDEs on unstructured meshes, we demonstrate that the proposed framework provides significant computational efficiency and accuracy gains over a variety of baselines in all the targeted downstream applications.

cs.LG↗

arXiv2026

Neuro-Symbolic AI for Analytical Solutions of Differential Equations

Analytical solutions to differential equations offer exact, interpretable insight but are rarely available because discovering them requires expert intuition or exhaustive search of combinatorial spaces. We introduce SIGS, a neuro-symbolic framework for equation-driven closed-form solution discovery. SIGS uses a context-free grammar to generate mathematically valid and physically meaningful building blocks, with a user-specified Ansatz prescribing how these blocks combine, embeds them into a topology-regularised continuous latent manifold, and searches this manifold in two stages: structure selection followed by coefficient refinement using gradient descent, scoring candidates only against the PDE residual and prescribed boundary and initial conditions. This design unifies symbolic reasoning with numerical optimization; the grammar constrains candidate solution blocks to be proper by construction, while the latent search makes exploration tractable and data-free. SIGS is the first neuro-symbolic method to (i) recover analytical solutions for coupled nonlinear PDE systems, (ii) discover equivalent symbolic forms when the grammar lacks the natural primitives, and (iii) produce accurate symbolic approximations for PDEs lacking known closed-form solutions. Overall, SIGS improves over existing symbolic methods by orders of magnitude in both accuracy and runtime across standard PDE benchmarks.

cs.LG↗

arXiv2026

Imposing Boundary Conditions on Neural Operators via Learned Function Extensions

Neural operators have emerged as powerful surrogates for the solution of partial differential equations (PDEs), yet their ability to handle general, highly variable boundary conditions (BCs) remains limited. Existing approaches often fail when the solution operator exhibits strong sensitivity to boundary forcings. We propose a general framework for conditioning neural operators on complex non-homogeneous BCs through function extensions. Our key idea is to map boundary data to latent pseudo-extensions defined over the entire spatial domain, enabling any standard operator learning architecture to consume boundary information. The resulting operator, coupled with an arbitrary domain-to-domain neural operator, can learn rich dependencies on complex BCs and input domain functions at the same time. To benchmark this setting, we construct 18 challenging datasets spanning Poisson, linear elasticity, and hyperelasticity problems, with highly variable, mixed-type, component-wise, and multi-segment BCs on diverse geometries. Our approach achieves state-of-the-art accuracy, outperforming baselines by large margins, while requiring no hyperparameter tuning across datasets. Overall, our results demonstrate that learning boundary-to-domain extensions is an effective and practical strategy for imposing complex BCs in existing neural operator frameworks, enabling accurate and robust scientific machine learning models for a broader range of PDE-governed problems.

cs.LG↗

arXiv2026

Towards a Certificate of Trust: Task-Aware OOD Detection for Scientific AI

Data-driven models are increasingly adopted in critical scientific fields like weather forecasting and fluid dynamics. These methods can fail on out-of-distribution (OOD) data, but detecting such failures in regression tasks is an open challenge. We propose a new OOD detection method based on estimating joint likelihoods using a score-based diffusion model. This approach considers not just the input but also the regression model's prediction, providing a task-aware reliability score. Across numerous scientific datasets, including PDE datasets, satellite imagery and brain tumor segmentation, we show that this likelihood strongly correlates with prediction error. Our work provides a foundational step towards building a verifiable 'certificate of trust', thereby offering a practical tool for assessing the trustworthiness of AI-based scientific predictions. Our code is publicly available at https://github.com/bogdanraonic3/OOD_Detection_ScientificML

cs.LG↗

arXiv2026

Earth System Foundation Model (ESFM): A unified framework for heterogeneous data integration and forecasting

Foundation models (FMs) for the Earth system learn statistical relationships between physical variables across massive datasets to enable versatile downstream applications through finetuning, separating them from task-specific weather models. Here, we introduce Earth System Foundation Model (ESFM), a fully open model building on the 3D Swin UNet backbone of the pioneering Aurora model. ESFM introduces extensions that increase functionality and foster adoption in climate sciences. First, the encoding scheme and training protocols have been extended to handle diverse datasets, including those containing missing values across all spatio-temporal dimensions such as satellite data, as well as station data, all under one backbone. Axial attention is introduced to capture inter-variable dependencies. As a result ESFM skillfully predicts variables in regions or on pressure levels where no data is present at the initial time, while preserving inter-variable relationships, for example between temperature, pressure, and humidity. Individual variable tokenization enables different sets of variables to be shuffled during training and simplifies the process of building extensions for new downstream tasks. Adaptive layer norm-based ensembles allow for a simple yet effective way to transform deterministic ESFM to a probabilistic FM. We present findings using dense gridded data (ERA5, CMIP6), regionally masked dense data, sparse gridded MODIS satellite data, and station data. Results demonstrate competitive or superior performance relative to state-of-the-art benchmarks. Case studies of Super Typhoon Doksuri (2023) and 2024 sudden stratospheric warming events show accurate positional and magnitude estimations of extreme weather. ESFM retains the strengths of previous foundation models, such as long-term stability, but facilitates application to a variety of downstream tasks.

physics.ao-ph↗

arXiv2026

Gauss-Newton Natural Gradient Descent for Shape Learning

We explore the use of the Gauss-Newton method for optimization in shape learning, including implicit neural surfaces and geometry-informed neural networks. The method addresses key challenges in shape learning, such as the ill-conditioning of the underlying differential constraints and the mismatch between the optimization problem in parameter space and the function space where the problem is naturally posed. This leads to significantly faster and more stable convergence than standard first-order methods, while also requiring far fewer iterations. Experiments across benchmark shape optimization tasks demonstrate that the Gauss-Newton method consistently improves both training speed and final solution accuracy.

cs.LG↗

arXiv2026

Rectified Flows for Fast Multiscale Fluid Flow Modeling

Statistical surrogate modeling of fluid flows is hard because dynamics are multiscale and highly sensitive to initial conditions. Conditional diffusion surrogates can be accurate, but usually need hundreds of stochastic sampling steps. We propose a rectified-flow surrogate that learns a time-dependent conditional velocity field transporting input-to-output laws along near-straight trajectories. Inference is then a deterministic ODE solve, making each function evaluation more informative: on multiscale 2D benchmarks, we match diffusion-class posterior statistics with only (8) ODE steps versus (\ge 128) for score-based diffusion. Theoretically, we give a law-level analysis for conditional PDE forecasting. We (i) connect one-point Wasserstein field metrics to the (k=1) correlation-marginal perspective in statistical solutions, (ii) derive a one-step error split into a **coverage** term (high-frequency tail, controlled by structure functions/spectral decay) and a **fit** term (controlled by the training objective), and (iii) show that rectification-time **straightness** controls ODE local truncation error, yielding practical step-size/step-count guidance. Motivated by this, we introduce a curvature-aware sampler that uses an EMA straightness proxy to adapt blending and step sizes at inference. Across incompressible and compressible multiscale 2D flows, it matches diffusion baselines in Wasserstein statistics and spectra, preserves fine-scale structure beyond MSE surrogates, and significantly reduces inference cost.

cs.LG↗

arXiv2026

Phaedra: Learning High-Fidelity Discrete Tokenization for the Physical Science

Tokens are discrete representations that allow modern deep learning to scale by transforming high-dimensional data into sequences that can be efficiently learned, generated, and generalized to new tasks. These have become foundational for image and video generation and, more recently, physical simulation. As existing tokenizers are designed for the explicit requirements of realistic visual perception of images, it is necessary to ask whether these approaches are optimal for scientific images, which exhibit a large dynamic range and require token embeddings to retain physical and spectral properties. In this work, we investigate the accuracy of a suite of image tokenizers across a range of metrics designed to measure the fidelity of PDE properties in both physical and spectral space. Based on the observation that these struggle to capture both fine details and precise magnitudes, we propose Phaedra, inspired by classical shape-gain quantization and proper orthogonal decomposition. We demonstrate that Phaedra consistently improves reconstruction across a range of PDE datasets. Additionally, our results show strong out-of-distribution generalization capabilities to three tasks of increasing complexity, namely known PDEs with different conditions, unknown PDEs, and real-world Earth observation and weather data.

cs.CV↗

arXiv2026

Geometry Aware Operator Transformer as an Efficient and Accurate Neural Surrogate for PDEs on Arbitrary Domains

The very challenging task of learning solution operators of PDEs on arbitrary domains accurately and efficiently is of vital importance to engineering and industrial simulations. Despite the existence of many operator learning algorithms to approximate such PDEs, we find that accurate models are not necessarily computationally efficient and vice versa. We address this issue by proposing a geometry aware operator transformer (GAOT) for learning PDEs on arbitrary domains. GAOT combines novel multiscale attentional graph neural operator encoders and decoders, together with geometry embeddings and (vision) transformer processors to accurately map information about the domain and the inputs into a robust approximation of the PDE solution. Multiple innovations in the implementation of GAOT also ensure computational efficiency and scalability. We demonstrate this significant gain in both accuracy and efficiency of GAOT over several baselines on a large number of learning tasks from a diverse set of PDEs, including achieving state of the art performance on three large scale three-dimensional industrial CFD datasets.

cs.LG↗

arXiv2025

Fluid Intelligence: A Forward Look on AI Foundation Models in Computational Fluid Dynamics

Driven by the advancement of GPUs and AI, the field of Computational Fluid Dynamics (CFD) is undergoing significant transformations. This paper bridges the gap between the machine learning and CFD communities by deconstructing industrial-scale CFD simulations into their core components. Our main contribution is to propose the first scaling law that incorporates CFD inputs for both data generation and model training to outline the unique challenges of developing and deploying these next-generation AI models for complex fluid dynamics problems. Using our new scaling law, we establish quantitative estimates for the large-scale limit, distinguishing between regimes where the cost of data generation is the dominant factor in total compute versus where the cost of model training prevails. We conclude that the incorporation of high-fidelity transient data provides the optimum route to a foundation model. We constrain our theory with concrete numbers, providing the first public estimates on the computational cost and time to build a foundation model for CFD.

physics.flu-dyn↗

arXiv2025

HyPINO: Multi-Physics Neural Operators via HyperPINNs and the Method of Manufactured Solutions

We present HyPINO, a multi-physics neural operator designed for zero-shot generalization across a broad class of PDEs without requiring task-specific fine-tuning. Our approach combines a Swin Transformer-based hypernetwork with mixed supervision: (i) labeled data from analytical solutions generated via the Method of Manufactured Solutions (MMS), and (ii) unlabeled samples optimized using physics-informed objectives. The model maps PDE parameterizations to target Physics-Informed Neural Networks (PINNs) and can handle linear elliptic, hyperbolic, and parabolic equations in two dimensions with varying source terms, geometries, and mixed Dirichlet/Neumann boundary conditions, including interior boundaries. HyPINO achieves strong zero-shot accuracy on seven benchmark problems from PINN literature, outperforming U-Nets, Poseidon, and Physics-Informed Neural Operators (PINO). Further, we introduce an iterative refinement procedure that treats the residual of the generated PINN as "delta PDE" and performs another forward pass to generate a corrective PINN. Summing their contributions and repeating this process forms an ensemble whose combined solution progressively reduces the error on six benchmarks and achieves a >100x lower $L_2$ loss in the best case, while retaining forward-only inference. Additionally, we evaluate the fine-tuning behavior of PINNs initialized by HyPINO and show that they converge faster and to lower final error than both randomly initialized and Reptile-meta-learned PINNs on five benchmarks, performing on par on the remaining two. Our results highlight the potential of this scalable approach as a foundation for extending neural operators toward solving increasingly complex, nonlinear, and high-dimensional PDE problems. The code and model weights are publicly available at https://github.com/rbischof/hypino.

cs.LG↗

arXiv2025

RIGNO: A Graph-based framework for robust and accurate operator learning for PDEs on arbitrary domains

Learning the solution operators of PDEs on arbitrary domains is challenging due to the diversity of possible domain shapes, in addition to the often intricate underlying physics. We propose an end-to-end graph neural network (GNN) based neural operator to learn PDE solution operators from data on point clouds in arbitrary domains. Our multi-scale model maps data between input/output point clouds by passing it through a downsampled regional mesh. The approach includes novel elements aimed at ensuring spatio-temporal resolution invariance. Our model, termed RIGNO, is tested on a challenging suite of benchmarks composed of various time-dependent and steady PDEs defined on a diverse set of domains. We demonstrate that RIGNO is significantly more accurate than neural operator baselines and robustly generalizes to unseen resolutions both in space and in time. Our code is publicly available at github.com/camlab-ethz/rigno.

cs.LG↗

arXiv2025

Universality of physical neural networks with multivariate nonlinearity

The enormous energy demand of artificial intelligence is driving the development of alternative hardware for deep learning. Physical neural networks try to exploit physical systems to perform machine learning more efficiently. In particular, optical systems can calculate with light using negligible energy. While their computational capabilities were long limited by the linearity of optical materials, nonlinear computations have recently been demonstrated through modified input encoding. Despite this breakthrough, our inability to determine if physical neural networks can learn arbitrary relationships between data -- a key requirement for deep learning known as universality -- hinders further progress. Here we present a fundamental theorem that establishes a universality condition for physical neural networks. It provides a powerful mathematical criterion that imposes device constraints, detailing how inputs should be encoded in the tunable parameters of the physical system. Based on this result, we propose a scalable architecture using free-space optics that is provably universal and achieves high accuracy on image classification tasks. Further, by combining the theorem with temporal multiplexing, we present a route to potentially huge effective system sizes in highly practical but poorly scalable on-chip photonic devices. Our theorem and scaling methods apply beyond optical systems and inform the design of a wide class of universal, energy-efficient physical neural networks, justifying further efforts in their development.

physics.optics↗

arXiv2025

Functional Neural Wavefunction Optimization

We propose a framework for the design and analysis of optimization algorithms in variational quantum Monte Carlo, drawing on geometric insights into the corresponding function space. The framework translates infinite-dimensional optimization dynamics into tractable parameter-space algorithms through a Galerkin projection onto the tangent space of the variational ansatz. This perspective unifies existing methods such as stochastic reconfiguration and Rayleigh-Gauss-Newton, provides connections to classic function-space algorithms, and motivates the derivation of novel algorithms with geometrically principled hyperparameter choices. We validate our framework with numerical experiments demonstrating its practical relevance through the accurate estimation of ground-state energies for several prototypical models in condensed matter physics modeled with neural network wavefunctions.

cond-mat.str-el↗